Wall clock time and date at job start Tue Mar 31 2020 00:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.64353 * 2 1 4 4 C 1.54595 * 110.72366 * 123.15936 * 2 1 3 5 5 C 1.53993 * 105.13684 * 140.49098 * 4 2 1 6 6 N 1.47897 * 107.06108 * 1.22592 * 5 4 2 7 7 C 1.38581 * 110.99939 * 214.15597 * 6 5 4 8 8 N 1.31221 * 126.47378 * 36.23877 * 7 6 5 9 9 N 1.28525 * 109.85888 * 180.02562 * 8 7 6 10 10 C 1.30300 * 110.05610 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.34669 * 179.73820 * 10 9 8 12 12 C 1.52999 * 109.47103 * 126.44727 * 11 10 9 13 13 C 1.52996 * 109.47129 * 246.45063 * 11 10 9 14 14 C 1.50700 * 109.47259 * 6.44713 * 11 10 9 15 15 H 1.08007 * 119.99678 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00176 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99777 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99990 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46740 * 60.00543 * 18 16 14 20 20 H 1.48499 * 109.46677 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47083 * 300.00461 * 18 16 14 22 22 N 1.36456 * 126.47236 * 216.23977 * 7 6 5 23 23 C 1.46501 * 127.13781 * 359.97438 * 22 7 6 24 24 C 1.48530 * 105.82017 * 334.66721 * 6 5 4 25 25 H 1.09004 * 109.47081 * 298.29438 * 1 2 3 26 26 H 1.09004 * 109.47417 * 58.29424 * 1 2 3 27 27 H 1.08997 * 109.47328 * 178.29974 * 1 2 3 28 28 H 1.08999 * 110.30989 * 21.57482 * 4 2 1 29 29 H 1.09003 * 110.30518 * 259.40445 * 4 2 1 30 30 H 1.09000 * 109.91754 * 241.86464 * 5 4 2 31 31 H 1.09000 * 110.08106 * 120.67194 * 5 4 2 32 32 H 1.09002 * 109.46621 * 60.00144 * 12 11 10 33 33 H 1.08995 * 109.46933 * 179.97438 * 12 11 10 34 34 H 1.08991 * 109.47353 * 300.00046 * 12 11 10 35 35 H 1.08999 * 109.47454 * 54.07437 * 13 11 10 36 36 H 1.08994 * 109.47736 * 174.08138 * 13 11 10 37 37 H 1.09004 * 109.47316 * 294.07997 * 13 11 10 38 38 H 0.96998 * 119.99661 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.47221 * 274.50813 * 23 22 7 40 40 H 1.09001 * 109.46548 * 34.51154 * 23 22 7 41 41 H 1.08997 * 109.47091 * 154.51008 * 23 22 7 42 42 H 1.08999 * 110.67020 * 157.64439 * 24 6 5 43 43 H 1.09000 * 110.67061 * 280.77313 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0771 -0.7909 1.2105 5 6 3.2920 -1.5663 0.6683 6 7 3.4359 -1.2050 -0.7586 7 6 3.9013 -2.2802 -1.4987 8 7 3.5970 -3.5434 -1.3155 9 7 4.2082 -4.2699 -2.1818 10 6 4.9324 -3.5195 -2.9630 11 6 5.8014 -3.9912 -4.1004 12 6 5.4267 -3.2346 -5.3763 13 6 7.2702 -3.7271 -3.7634 14 6 5.5926 -5.4685 -4.3128 15 1 4.8996 -6.0114 -3.6870 16 6 6.2854 -6.1268 -5.3066 17 7 7.1289 -5.4655 -6.0688 18 14 6.0261 -7.9578 -5.5703 19 1 4.6003 -8.2137 -5.8972 20 1 6.8825 -8.4226 -6.6910 21 1 6.3898 -8.6926 -4.3322 22 7 4.7626 -2.2253 -2.5557 23 6 5.3777 -1.0281 -3.1341 24 6 2.0821 -0.7938 -1.2107 25 1 -0.3633 0.4871 0.9049 26 1 -0.3634 0.5401 -0.8743 27 1 -0.3634 -1.0272 -0.0305 28 1 1.3218 -1.4831 1.5827 29 1 2.3867 -0.1068 2.0006 30 1 3.1213 -2.6386 0.7645 31 1 4.1912 -1.2833 1.2155 32 1 5.5777 -2.1660 -5.2226 33 1 6.0555 -3.5754 -6.1987 34 1 4.3803 -3.4227 -5.6163 35 1 7.5091 -4.1789 -2.8007 36 1 7.9042 -4.1618 -4.5362 37 1 7.4439 -2.6521 -3.7133 38 1 7.6166 -5.9288 -6.7677 39 1 4.6990 -0.5877 -3.8644 40 1 5.5797 -0.3054 -2.3436 41 1 6.3121 -1.3006 -3.6247 42 1 2.1481 -0.1553 -2.0916 43 1 1.4622 -1.6673 -1.4130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339751574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:05 Heat of formation + Delta-G solvation = 86.765287 kcal Electronic energy + Delta-G solvation = -22733.937250 eV Core-core repulsion = 19622.781268 eV Total energy + Delta-G solvation = -3111.155982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.27210 -39.04624 -35.81308 -34.24542 -33.29973 -31.17090 -29.70838 -28.17524 -27.12807 -25.87002 -25.79794 -25.07478 -22.50787 -21.77669 -20.43406 -19.92719 -19.17914 -16.89646 -16.30559 -15.82298 -15.59437 -15.16924 -14.81938 -14.12496 -13.56329 -13.42347 -13.37725 -13.08434 -13.00092 -12.83020 -12.35994 -12.31100 -11.83078 -11.76647 -11.39115 -11.14436 -11.08064 -10.90708 -10.86370 -10.66952 -10.62801 -10.57903 -10.16090 -10.08706 -9.96813 -9.78099 -9.44740 -8.93474 -8.64454 -8.37434 -7.93619 -6.01909 -4.07842 2.42213 2.85603 3.37757 3.39750 3.46783 3.67485 4.05630 4.40771 4.45516 4.58717 4.77673 5.13007 5.17387 5.27213 5.30838 5.31791 5.38512 5.46519 5.47658 5.56223 5.65166 5.72360 5.77616 5.84805 5.89757 5.95467 6.07431 6.16946 6.23926 6.52766 6.58890 6.63863 6.68335 6.72705 6.78832 7.14235 7.24866 7.36625 7.63929 7.82202 7.84798 8.10826 8.32447 8.98798 9.53601 9.64023 11.01455 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.031270 B = 0.004473 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.204323 B = 6258.888518 C = 6589.174684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.046 3.954 6 N -0.442 5.442 7 C 0.297 3.703 8 N -0.323 5.323 9 N -0.288 5.288 10 C 0.242 3.758 11 C 0.145 3.855 12 C -0.135 4.135 13 C -0.132 4.132 14 C -0.491 4.491 15 H 0.076 0.924 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.276 1.276 22 N -0.473 5.473 23 C 0.081 3.919 24 C 0.049 3.951 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.012 0.988 33 H 0.098 0.902 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.101 0.899 37 H 0.011 0.989 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 13.695 8.425 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.162 4.162 5 C -0.082 4.082 6 N -0.167 5.167 7 C -0.059 4.059 8 N -0.168 5.168 9 N -0.126 5.126 10 C -0.025 4.025 11 C 0.142 3.858 12 C -0.194 4.194 13 C -0.191 4.191 14 C -0.529 4.529 15 H 0.094 0.906 16 C -0.138 4.138 17 N -0.535 5.535 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.201 1.201 22 N -0.166 5.166 23 C -0.062 4.062 24 C -0.079 4.079 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.031 0.969 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.119 0.881 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.881 12.840 8.802 17.020 hybrid contribution -0.004 -0.250 -0.620 0.669 sum -6.885 12.591 8.182 16.518 Atomic orbital electron populations 1.21771 0.94241 1.02211 1.01838 1.22047 0.95609 0.99529 0.94088 0.89798 1.22485 0.97095 0.98900 0.97761 1.22861 0.98654 1.00799 0.85878 1.61415 1.24265 1.28331 1.02671 1.22354 0.98237 0.92007 0.93309 1.74431 1.21837 0.99280 1.21235 1.74086 1.09965 1.24992 1.03572 1.26237 0.99298 0.77616 0.99377 1.16937 0.88387 0.96263 0.84191 1.21971 1.00843 0.95172 1.01376 1.21929 0.98792 0.96487 1.01880 1.21039 1.24475 0.91066 1.16366 0.90574 1.24870 0.94892 0.98541 0.95501 1.69760 1.27229 1.35738 1.20764 0.86489 0.78132 0.84869 0.77592 1.20222 1.21443 1.20137 1.46190 1.35530 1.09228 1.25681 1.22083 0.99466 0.85461 0.99223 1.23372 0.87302 0.99038 0.98150 0.92272 0.92445 0.92365 0.90890 0.90847 0.90777 0.90238 0.96872 0.88343 0.95116 0.95172 0.88092 0.96971 0.92860 0.91169 0.89914 0.88487 0.90084 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.16 37.16 0.34 -0.82 16 2 C -0.09 -0.90 3.65 -88.76 -0.32 -1.22 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.12 -1.23 6.51 -25.37 -0.17 -1.39 16 5 C 0.05 0.61 6.63 -2.76 -0.02 0.59 16 6 N -0.44 -6.70 5.31 -170.55 -0.91 -7.60 16 7 C 0.30 5.76 6.69 -318.86 -2.13 3.63 16 8 N -0.32 -7.33 11.07 30.32 0.34 -7.00 16 9 N -0.29 -7.31 11.01 32.99 0.36 -6.94 16 10 C 0.24 5.67 6.34 -154.01 -0.98 4.70 16 11 C 0.15 3.52 0.47 -156.81 -0.07 3.45 16 12 C -0.14 -3.06 8.06 37.16 0.30 -2.76 16 13 C -0.13 -3.05 8.20 37.16 0.30 -2.74 16 14 C -0.49 -13.40 7.91 -34.44 -0.27 -13.67 16 15 H 0.08 2.20 6.96 -52.48 -0.37 1.84 16 16 C 0.06 1.65 5.13 -17.82 -0.09 1.56 16 17 N -0.90 -23.68 9.33 55.43 0.52 -23.16 16 18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 N -0.47 -9.29 3.21 -121.46 -0.39 -9.68 16 23 C 0.08 1.22 9.58 59.85 0.57 1.79 16 24 C 0.05 0.63 5.94 -1.90 -0.01 0.62 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.07 0.69 7.85 -51.93 -0.41 0.29 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.16 6.91 -51.93 -0.36 0.80 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.01 0.24 5.51 -51.93 -0.29 -0.04 16 33 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 2.50 5.93 -51.93 -0.31 2.20 16 37 H 0.01 0.23 5.87 -51.93 -0.30 -0.07 16 38 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 1.47 4.63 -51.93 -0.24 1.23 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -30.04 330.49 -9.45 -39.49 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.78 Total: -0.18 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.55 Total: -6.29 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.08 Total: -54.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.04 -9.45 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339751574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.252 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds