Wall clock time and date at job start Tue Mar 31 2020 00:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.64353 * 2 1 4 4 C 1.54595 * 110.72366 * 123.15936 * 2 1 3 5 5 C 1.53993 * 105.13684 * 140.49098 * 4 2 1 6 6 N 1.47897 * 107.06108 * 1.22592 * 5 4 2 7 7 C 1.38581 * 110.99939 * 214.15597 * 6 5 4 8 8 N 1.31221 * 126.47378 * 36.23877 * 7 6 5 9 9 N 1.28525 * 109.85888 * 180.02562 * 8 7 6 10 10 C 1.30300 * 110.05610 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.34669 * 179.73820 * 10 9 8 12 12 C 1.52999 * 109.47103 * 126.44727 * 11 10 9 13 13 C 1.52996 * 109.47129 * 246.45063 * 11 10 9 14 14 C 1.50700 * 109.47259 * 6.44713 * 11 10 9 15 15 H 1.08007 * 119.99678 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00176 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99777 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99990 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46740 * 60.00543 * 18 16 14 20 20 H 1.48499 * 109.46677 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47083 * 300.00461 * 18 16 14 22 22 N 1.36456 * 126.47236 * 216.23977 * 7 6 5 23 23 C 1.46501 * 127.13781 * 359.97438 * 22 7 6 24 24 C 1.48530 * 105.82017 * 334.66721 * 6 5 4 25 25 H 1.09004 * 109.47081 * 298.29438 * 1 2 3 26 26 H 1.09004 * 109.47417 * 58.29424 * 1 2 3 27 27 H 1.08997 * 109.47328 * 178.29974 * 1 2 3 28 28 H 1.08999 * 110.30989 * 21.57482 * 4 2 1 29 29 H 1.09003 * 110.30518 * 259.40445 * 4 2 1 30 30 H 1.09000 * 109.91754 * 241.86464 * 5 4 2 31 31 H 1.09000 * 110.08106 * 120.67194 * 5 4 2 32 32 H 1.09002 * 109.46621 * 60.00144 * 12 11 10 33 33 H 1.08995 * 109.46933 * 179.97438 * 12 11 10 34 34 H 1.08991 * 109.47353 * 300.00046 * 12 11 10 35 35 H 1.08999 * 109.47454 * 54.07437 * 13 11 10 36 36 H 1.08994 * 109.47736 * 174.08138 * 13 11 10 37 37 H 1.09004 * 109.47316 * 294.07997 * 13 11 10 38 38 H 0.96998 * 119.99661 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.47221 * 274.50813 * 23 22 7 40 40 H 1.09001 * 109.46548 * 34.51154 * 23 22 7 41 41 H 1.08997 * 109.47091 * 154.51008 * 23 22 7 42 42 H 1.08999 * 110.67020 * 157.64439 * 24 6 5 43 43 H 1.09000 * 110.67061 * 280.77313 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0771 -0.7909 1.2105 5 6 3.2920 -1.5663 0.6683 6 7 3.4359 -1.2050 -0.7586 7 6 3.9013 -2.2802 -1.4987 8 7 3.5970 -3.5434 -1.3155 9 7 4.2082 -4.2699 -2.1818 10 6 4.9324 -3.5195 -2.9630 11 6 5.8014 -3.9912 -4.1004 12 6 5.4267 -3.2346 -5.3763 13 6 7.2702 -3.7271 -3.7634 14 6 5.5926 -5.4685 -4.3128 15 1 4.8996 -6.0114 -3.6870 16 6 6.2854 -6.1268 -5.3066 17 7 7.1289 -5.4655 -6.0688 18 14 6.0261 -7.9578 -5.5703 19 1 4.6003 -8.2137 -5.8972 20 1 6.8825 -8.4226 -6.6910 21 1 6.3898 -8.6926 -4.3322 22 7 4.7626 -2.2253 -2.5557 23 6 5.3777 -1.0281 -3.1341 24 6 2.0821 -0.7938 -1.2107 25 1 -0.3633 0.4871 0.9049 26 1 -0.3634 0.5401 -0.8743 27 1 -0.3634 -1.0272 -0.0305 28 1 1.3218 -1.4831 1.5827 29 1 2.3867 -0.1068 2.0006 30 1 3.1213 -2.6386 0.7645 31 1 4.1912 -1.2833 1.2155 32 1 5.5777 -2.1660 -5.2226 33 1 6.0555 -3.5754 -6.1987 34 1 4.3803 -3.4227 -5.6163 35 1 7.5091 -4.1789 -2.8007 36 1 7.9042 -4.1618 -4.5362 37 1 7.4439 -2.6521 -3.7133 38 1 7.6166 -5.9288 -6.7677 39 1 4.6990 -0.5877 -3.8644 40 1 5.5797 -0.3054 -2.3436 41 1 6.3121 -1.3006 -3.6247 42 1 2.1481 -0.1553 -2.0916 43 1 1.4622 -1.6673 -1.4130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339751574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:04 Heat of formation + Delta-G solvation = 70.672005 kcal Electronic energy + Delta-G solvation = -22734.635107 eV Core-core repulsion = 19622.781268 eV Total energy + Delta-G solvation = -3111.853839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.89562 -40.12453 -37.63957 -35.77142 -34.46902 -33.03916 -30.73167 -29.69561 -28.46814 -27.71279 -27.18617 -26.68388 -23.79605 -23.39697 -21.52869 -21.07267 -20.93794 -18.33750 -17.81788 -17.20162 -17.11391 -16.83006 -16.49226 -15.31126 -15.20610 -14.87224 -14.49504 -14.28595 -14.07792 -13.93283 -13.84496 -13.55818 -13.23883 -13.15496 -13.00390 -12.74879 -12.63455 -12.48722 -12.39154 -12.05160 -11.97911 -11.84968 -11.84515 -11.67283 -11.52696 -11.45360 -10.96800 -10.73259 -10.41819 -10.18790 -9.53128 -8.05441 -6.16737 0.86744 1.39119 1.45053 1.45463 1.55085 1.95066 2.47617 2.82282 3.20084 3.46645 3.71143 3.74580 3.87103 3.98894 4.22928 4.29869 4.32841 4.39552 4.42290 4.52773 4.61505 4.63632 4.75980 4.77409 4.83172 4.88162 4.93489 4.95485 4.99613 5.01058 5.16979 5.20305 5.26410 5.28524 5.36414 5.48656 5.56933 5.60750 5.77791 5.97518 6.07424 6.30597 6.40248 6.86002 7.48832 7.92718 8.95399 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.031270 B = 0.004473 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.204323 B = 6258.888518 C = 6589.174684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.103 0.897 4 C -0.116 4.116 5 C 0.039 3.961 6 N -0.435 5.435 7 C 0.319 3.681 8 N -0.360 5.360 9 N -0.334 5.334 10 C 0.225 3.775 11 C 0.141 3.859 12 C -0.122 4.122 13 C -0.120 4.120 14 C -0.516 4.516 15 H 0.048 0.952 16 C 0.032 3.968 17 N -0.900 5.900 18 Si 0.947 3.053 19 H -0.281 1.281 20 H -0.275 1.275 21 H -0.281 1.281 22 N -0.471 5.471 23 C 0.072 3.928 24 C 0.044 3.956 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 16.536 8.996 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.122 0.878 4 C -0.154 4.154 5 C -0.088 4.088 6 N -0.161 5.161 7 C -0.038 4.038 8 N -0.203 5.203 9 N -0.172 5.172 10 C -0.044 4.044 11 C 0.138 3.862 12 C -0.180 4.180 13 C -0.179 4.179 14 C -0.555 4.555 15 H 0.066 0.934 16 C -0.168 4.168 17 N -0.539 5.539 18 Si 0.774 3.226 19 H -0.207 1.207 20 H -0.200 1.200 21 H -0.207 1.207 22 N -0.163 5.163 23 C -0.069 4.069 24 C -0.083 4.083 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.201 15.703 9.365 19.650 hybrid contribution 0.065 -1.052 -0.734 1.284 sum -7.136 14.651 8.631 18.441 Atomic orbital electron populations 1.21760 0.92986 1.01830 1.03205 1.22061 0.96507 0.99686 0.91802 0.87831 1.22494 0.95445 0.99016 0.98442 1.22991 1.00952 0.99748 0.85094 1.61710 1.25479 1.25796 1.03120 1.22820 0.96505 0.92140 0.92345 1.74345 1.23199 1.00914 1.21864 1.73969 1.11328 1.27037 1.04893 1.25924 0.99752 0.79196 0.99508 1.16872 0.89201 0.94868 0.85250 1.21789 0.99279 0.97135 0.99842 1.21754 0.97645 0.98357 1.00132 1.21133 1.24593 0.93149 1.16588 0.93381 1.25348 0.94780 1.01341 0.95302 1.69825 1.27024 1.36486 1.20601 0.85790 0.77855 0.81505 0.77482 1.20661 1.20002 1.20719 1.46333 1.35293 1.09203 1.25482 1.22432 0.99643 0.84186 1.00647 1.23516 0.85689 0.98676 1.00398 0.90336 0.91710 0.93625 0.90681 0.88127 0.93743 0.89287 0.93314 0.90100 0.96633 0.96792 0.89895 0.93682 0.92623 0.89052 0.87208 0.88489 0.88977 0.94844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.16 71.98 0.66 -1.20 16 2 C -0.08 -1.30 3.65 -9.59 -0.03 -1.33 16 3 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.12 -1.96 6.51 31.47 0.20 -1.75 16 5 C 0.04 1.00 6.63 86.45 0.57 1.57 16 6 N -0.44 -12.45 5.31 -693.50 -3.68 -16.13 16 7 C 0.32 12.25 6.69 260.11 1.74 13.99 16 8 N -0.36 -16.79 11.07 -58.00 -0.64 -17.44 16 9 N -0.33 -17.62 11.01 -49.53 -0.55 -18.16 16 10 C 0.23 10.72 6.34 137.64 0.87 11.59 16 11 C 0.14 6.91 0.47 -53.67 -0.03 6.89 16 12 C -0.12 -5.48 8.06 71.98 0.58 -4.90 16 13 C -0.12 -5.52 8.20 71.98 0.59 -4.93 16 14 C -0.52 -29.06 7.91 25.60 0.20 -28.86 16 15 H 0.05 2.93 6.96 -2.91 -0.02 2.91 16 16 C 0.03 1.71 5.13 84.65 0.43 2.15 16 17 N -0.90 -47.73 9.33 21.45 0.20 -47.53 16 18 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 N -0.47 -18.01 3.21 -538.18 -1.73 -19.74 16 23 C 0.07 1.95 9.58 127.77 1.22 3.17 16 24 C 0.04 1.05 5.94 86.65 0.52 1.57 16 25 H 0.08 0.77 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.04 0.73 8.13 -2.39 -0.02 0.71 16 28 H 0.07 1.26 7.85 -2.39 -0.02 1.24 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.41 6.91 -2.39 -0.02 1.39 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.77 5.51 -2.39 -0.01 1.76 16 33 H 0.08 3.93 6.07 -2.39 -0.01 3.91 16 34 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 4.11 5.93 -2.39 -0.01 4.10 16 37 H 0.04 1.71 5.87 -2.38 -0.01 1.70 16 38 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 39 H 0.09 2.11 8.08 -2.39 -0.02 2.09 16 40 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.10 2.63 4.63 -2.39 -0.01 2.62 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.03 0.97 7.90 -2.39 -0.02 0.95 16 Total: -1.00 -67.75 330.49 4.16 -63.58 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.00 Total: 10.89 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 7.54 Total: -2.05 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -6.40 Total: -119.00 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.75 4.16 -63.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339751574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.256 kcal (2) G-P(sol) polarization free energy of solvation -67.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds