Wall clock time and date at job start Tue Mar 31 2020 00:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00216 * 2 1 4 4 C 1.50700 * 120.00208 * 180.02562 * 2 1 3 5 5 N 1.46897 * 109.47509 * 95.00132 * 4 2 1 6 6 C 1.46895 * 110.99957 * 66.04301 * 5 4 2 7 7 C 1.38576 * 111.00284 * 190.00244 * 5 4 2 8 8 N 1.31223 * 126.47336 * 304.00212 * 7 5 4 9 9 N 1.28529 * 109.85839 * 179.69303 * 8 7 5 10 10 C 1.30295 * 110.05393 * 0.45368 * 9 8 7 11 11 C 1.50703 * 126.34234 * 179.82145 * 10 9 8 12 12 H 1.08998 * 109.46648 * 179.68568 * 11 10 9 13 13 C 1.53000 * 109.47057 * 59.68946 * 11 10 9 14 14 C 1.52996 * 109.47261 * 299.68388 * 11 10 9 15 15 C 1.50704 * 109.47356 * 185.00142 * 14 11 10 16 16 H 1.07997 * 119.99212 * 359.72646 * 15 14 11 17 17 C 1.37868 * 119.99821 * 180.02562 * 15 14 11 18 18 N 1.31515 * 120.00678 * 359.72547 * 17 15 14 19 19 Si 1.86802 * 119.99806 * 179.72554 * 17 15 14 20 20 H 1.48506 * 109.47032 * 89.99728 * 19 17 15 21 21 H 1.48502 * 109.47497 * 210.00129 * 19 17 15 22 22 H 1.48502 * 109.46999 * 329.99915 * 19 17 15 23 23 N 1.36452 * 126.47680 * 123.95883 * 7 5 4 24 24 C 1.46501 * 127.13352 * 0.02562 * 23 7 5 25 25 H 1.07995 * 120.00183 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99942 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47549 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47058 * 300.00639 * 3 2 1 29 29 H 1.09008 * 109.47053 * 59.99735 * 3 2 1 30 30 H 1.09003 * 109.46901 * 334.99580 * 4 2 1 31 31 H 1.09005 * 109.47014 * 215.00066 * 4 2 1 32 32 H 1.09004 * 109.46789 * 177.27765 * 6 5 4 33 33 H 1.08998 * 109.47294 * 297.27627 * 6 5 4 34 34 H 1.09001 * 109.47074 * 57.28170 * 6 5 4 35 35 H 1.08998 * 109.47084 * 299.99355 * 13 11 10 36 36 H 1.08998 * 109.47084 * 59.99866 * 13 11 10 37 37 H 1.09003 * 109.47021 * 179.97438 * 13 11 10 38 38 H 1.09006 * 109.47140 * 65.00084 * 14 11 10 39 39 H 1.09004 * 109.47542 * 305.00743 * 14 11 10 40 40 H 0.96996 * 120.00529 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.47052 * 264.74706 * 24 23 7 42 42 H 1.09000 * 109.47303 * 24.74430 * 24 23 7 43 43 H 1.09006 * 109.47087 * 144.74925 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3804 6 6 3.3708 -0.7113 -1.9501 7 6 2.9058 -2.9618 -1.4439 8 7 3.9244 -3.4424 -0.7706 9 7 4.1003 -4.6801 -1.0692 10 6 3.2177 -5.0568 -1.9506 11 6 3.0921 -6.4303 -2.5579 12 1 2.2572 -6.4427 -3.2585 13 6 2.8442 -7.4568 -1.4508 14 6 4.3843 -6.7807 -3.2984 15 6 4.2150 -8.0994 -4.0080 16 1 3.2808 -8.6361 -3.9342 17 6 5.2548 -8.6234 -4.7462 18 7 6.3926 -7.9700 -4.8357 19 14 5.0475 -10.2616 -5.6196 20 1 4.5206 -10.0296 -6.9885 21 1 6.3621 -10.9471 -5.7047 22 1 4.0950 -11.1105 -4.8598 23 7 2.4230 -3.9767 -2.2177 24 6 1.2884 -3.9208 -3.1428 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 3.1351 1.1059 -0.0005 28 1 1.8001 1.8767 -0.8900 29 1 1.8001 1.8767 0.8900 30 1 1.4386 -2.0856 0.4335 31 1 2.9742 -1.1990 0.5889 32 1 3.6494 -1.0304 -2.9545 33 1 2.9132 0.2769 -1.9966 34 1 4.2608 -0.6705 -1.3220 35 1 3.6791 -7.4444 -0.7503 36 1 1.9236 -7.2072 -0.9234 37 1 2.7529 -8.4502 -1.8902 38 1 5.2039 -6.8554 -2.5835 39 1 4.6081 -6.0018 -4.0274 40 1 7.1241 -8.3385 -5.3554 41 1 0.3897 -4.2744 -2.6374 42 1 1.1389 -2.8927 -3.4727 43 1 1.4923 -4.5536 -4.0066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340074273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:19 Heat of formation + Delta-G solvation = 94.277734 kcal Electronic energy + Delta-G solvation = -21898.344719 eV Core-core repulsion = 18787.514502 eV Total energy + Delta-G solvation = -3110.830218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59292 -38.33068 -35.42325 -34.80251 -34.16154 -32.17452 -28.84201 -28.27167 -27.34186 -26.93570 -26.88119 -24.65451 -24.06184 -21.95758 -20.56642 -19.17660 -18.64391 -17.03638 -16.49484 -16.24634 -15.80726 -15.26764 -14.91406 -14.51647 -14.17051 -14.02347 -13.54543 -13.30471 -13.20904 -13.10882 -12.68653 -12.38529 -12.27836 -11.93014 -11.75412 -11.65845 -11.35809 -11.18518 -11.05996 -10.94703 -10.76587 -10.49042 -10.33200 -9.96080 -9.81918 -9.59939 -9.41049 -9.12122 -8.78901 -8.42007 -8.36370 -6.00778 -4.04615 1.82428 2.10662 2.61974 3.28981 3.30758 3.37875 3.40268 3.86915 4.43422 4.51647 4.68268 4.86660 4.96225 5.07807 5.14364 5.23457 5.28392 5.34314 5.34634 5.40396 5.48336 5.49437 5.59624 5.64178 5.65579 5.75914 5.84329 6.03994 6.09566 6.24068 6.33250 6.33638 6.53888 6.63256 6.69521 6.81823 6.91602 7.05023 7.45791 7.61710 7.78172 7.98349 8.34263 9.01003 9.18292 9.59049 11.10303 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.037475 B = 0.003493 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.978942 B = 8015.139311 C = 8160.163980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.123 4.123 3 C -0.121 4.121 4 C 0.103 3.897 5 N -0.458 5.458 6 C 0.032 3.968 7 C 0.314 3.686 8 N -0.312 5.312 9 N -0.286 5.286 10 C 0.218 3.782 11 C -0.003 4.003 12 H 0.073 0.927 13 C -0.125 4.125 14 C 0.038 3.962 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 N -0.471 5.471 24 C 0.081 3.919 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 15.876 6.340 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 C -0.178 4.178 4 C -0.024 4.024 5 N -0.183 5.183 6 C -0.116 4.116 7 C -0.043 4.043 8 N -0.156 5.156 9 N -0.126 5.126 10 C -0.049 4.049 11 C -0.024 4.024 12 H 0.091 0.909 13 C -0.183 4.183 14 C 0.000 4.000 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.163 5.163 24 C -0.062 4.062 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.126 15.842 6.928 21.119 hybrid contribution -0.513 -0.708 -1.134 1.432 sum -12.639 15.134 5.794 20.551 Atomic orbital electron populations 1.23680 0.95138 1.01875 1.00386 1.21566 0.95376 0.94837 1.00630 1.20956 1.00280 0.94560 1.02012 1.21164 0.99541 0.94814 0.86862 1.58653 1.41776 0.96619 1.21242 1.22538 0.93836 0.95252 0.99932 1.22174 0.95211 0.89773 0.97092 1.74527 1.13821 1.04619 1.22656 1.74053 1.20523 1.04122 1.13877 1.25690 0.89722 0.92166 0.97294 1.20014 1.03106 0.82968 0.96303 0.90867 1.21669 0.99983 0.99224 0.97456 1.19109 0.89834 0.96349 0.94675 1.21139 0.99320 1.05042 1.30404 0.92301 1.25003 0.95235 0.97441 0.96592 1.69979 1.03606 1.38585 1.40749 0.86601 0.77496 0.83995 0.79936 1.20752 1.21217 1.19786 1.46264 1.26423 1.09797 1.33840 1.21974 0.86614 1.04784 0.92831 0.88331 0.88393 0.91770 0.91409 0.91552 0.90269 0.92178 0.91353 0.89902 0.93671 0.92038 0.94994 0.90614 0.94962 0.96826 0.92908 0.90613 0.89030 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 13.93 29.02 0.40 -1.01 16 2 C -0.12 -1.12 5.10 -101.06 -0.52 -1.63 16 3 C -0.12 -0.88 8.44 36.01 0.30 -0.57 16 4 C 0.10 1.20 4.93 -4.98 -0.02 1.17 16 5 N -0.46 -6.03 4.74 -183.76 -0.87 -6.91 16 6 C 0.03 0.37 8.61 60.06 0.52 0.89 16 7 C 0.31 5.33 6.42 -318.88 -2.05 3.29 16 8 N -0.31 -6.35 12.13 30.31 0.37 -5.98 16 9 N -0.29 -6.40 12.18 32.99 0.40 -6.00 16 10 C 0.22 4.42 6.58 -154.02 -1.01 3.40 16 11 C 0.00 -0.06 2.71 -91.77 -0.25 -0.31 16 12 H 0.07 1.37 7.08 -51.93 -0.37 1.00 16 13 C -0.13 -2.38 8.98 37.16 0.33 -2.05 16 14 C 0.04 0.99 4.43 -27.88 -0.12 0.86 16 15 C -0.52 -14.12 8.41 -34.44 -0.29 -14.41 16 16 H 0.06 1.51 7.05 -52.49 -0.37 1.14 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 N -0.47 -7.96 3.21 -121.45 -0.39 -8.35 16 24 C 0.08 0.99 10.82 59.85 0.65 1.63 16 25 H 0.10 0.66 8.05 -52.49 -0.42 0.23 16 26 H 0.10 0.81 7.99 -52.48 -0.42 0.40 16 27 H 0.06 0.48 7.29 -51.93 -0.38 0.10 16 28 H 0.07 0.43 8.03 -51.93 -0.42 0.02 16 29 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 31 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 34 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.45 6.94 -51.93 -0.36 1.09 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 43 H 0.09 1.08 7.47 -51.93 -0.39 0.69 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -32.71 354.51 -8.78 -41.49 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.20 Total: -2.62 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.15 Total: -7.16 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.25 Total: -53.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.71 -8.78 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340074273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.769 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds