Wall clock time and date at job start Tue Mar 31 2020 00:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00216 * 2 1 4 4 C 1.50700 * 120.00208 * 180.02562 * 2 1 3 5 5 N 1.46897 * 109.47509 * 95.00132 * 4 2 1 6 6 C 1.46895 * 110.99957 * 66.04301 * 5 4 2 7 7 C 1.38576 * 111.00284 * 190.00244 * 5 4 2 8 8 N 1.31223 * 126.47336 * 304.00212 * 7 5 4 9 9 N 1.28529 * 109.85839 * 179.69303 * 8 7 5 10 10 C 1.30295 * 110.05393 * 0.45368 * 9 8 7 11 11 C 1.50703 * 126.34234 * 179.82145 * 10 9 8 12 12 H 1.08998 * 109.46648 * 179.68568 * 11 10 9 13 13 C 1.53000 * 109.47057 * 59.68946 * 11 10 9 14 14 C 1.52996 * 109.47261 * 299.68388 * 11 10 9 15 15 C 1.50704 * 109.47356 * 185.00142 * 14 11 10 16 16 H 1.07997 * 119.99212 * 359.72646 * 15 14 11 17 17 C 1.37868 * 119.99821 * 180.02562 * 15 14 11 18 18 N 1.31515 * 120.00678 * 359.72547 * 17 15 14 19 19 Si 1.86802 * 119.99806 * 179.72554 * 17 15 14 20 20 H 1.48506 * 109.47032 * 89.99728 * 19 17 15 21 21 H 1.48502 * 109.47497 * 210.00129 * 19 17 15 22 22 H 1.48502 * 109.46999 * 329.99915 * 19 17 15 23 23 N 1.36452 * 126.47680 * 123.95883 * 7 5 4 24 24 C 1.46501 * 127.13352 * 0.02562 * 23 7 5 25 25 H 1.07995 * 120.00183 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99942 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47549 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47058 * 300.00639 * 3 2 1 29 29 H 1.09008 * 109.47053 * 59.99735 * 3 2 1 30 30 H 1.09003 * 109.46901 * 334.99580 * 4 2 1 31 31 H 1.09005 * 109.47014 * 215.00066 * 4 2 1 32 32 H 1.09004 * 109.46789 * 177.27765 * 6 5 4 33 33 H 1.08998 * 109.47294 * 297.27627 * 6 5 4 34 34 H 1.09001 * 109.47074 * 57.28170 * 6 5 4 35 35 H 1.08998 * 109.47084 * 299.99355 * 13 11 10 36 36 H 1.08998 * 109.47084 * 59.99866 * 13 11 10 37 37 H 1.09003 * 109.47021 * 179.97438 * 13 11 10 38 38 H 1.09006 * 109.47140 * 65.00084 * 14 11 10 39 39 H 1.09004 * 109.47542 * 305.00743 * 14 11 10 40 40 H 0.96996 * 120.00529 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.47052 * 264.74706 * 24 23 7 42 42 H 1.09000 * 109.47303 * 24.74430 * 24 23 7 43 43 H 1.09006 * 109.47087 * 144.74925 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3804 6 6 3.3708 -0.7113 -1.9501 7 6 2.9058 -2.9618 -1.4439 8 7 3.9244 -3.4424 -0.7706 9 7 4.1003 -4.6801 -1.0692 10 6 3.2177 -5.0568 -1.9506 11 6 3.0921 -6.4303 -2.5579 12 1 2.2572 -6.4427 -3.2585 13 6 2.8442 -7.4568 -1.4508 14 6 4.3843 -6.7807 -3.2984 15 6 4.2150 -8.0994 -4.0080 16 1 3.2808 -8.6361 -3.9342 17 6 5.2548 -8.6234 -4.7462 18 7 6.3926 -7.9700 -4.8357 19 14 5.0475 -10.2616 -5.6196 20 1 4.5206 -10.0296 -6.9885 21 1 6.3621 -10.9471 -5.7047 22 1 4.0950 -11.1105 -4.8598 23 7 2.4230 -3.9767 -2.2177 24 6 1.2884 -3.9208 -3.1428 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 3.1351 1.1059 -0.0005 28 1 1.8001 1.8767 -0.8900 29 1 1.8001 1.8767 0.8900 30 1 1.4386 -2.0856 0.4335 31 1 2.9742 -1.1990 0.5889 32 1 3.6494 -1.0304 -2.9545 33 1 2.9132 0.2769 -1.9966 34 1 4.2608 -0.6705 -1.3220 35 1 3.6791 -7.4444 -0.7503 36 1 1.9236 -7.2072 -0.9234 37 1 2.7529 -8.4502 -1.8902 38 1 5.2039 -6.8554 -2.5835 39 1 4.6081 -6.0018 -4.0274 40 1 7.1241 -8.3385 -5.3554 41 1 0.3897 -4.2744 -2.6374 42 1 1.1389 -2.8927 -3.4727 43 1 1.4923 -4.5536 -4.0066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340074273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:19 Heat of formation + Delta-G solvation = 75.789749 kcal Electronic energy + Delta-G solvation = -21899.146418 eV Core-core repulsion = 18787.514502 eV Total energy + Delta-G solvation = -3111.631917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.03653 -39.33696 -37.09832 -35.95917 -35.33094 -34.16129 -30.34138 -29.12836 -28.83698 -28.44214 -27.61423 -25.97724 -25.66550 -23.73143 -21.86232 -20.71558 -19.42811 -18.64075 -18.13095 -17.52005 -17.14921 -16.48784 -16.23676 -15.90059 -15.54337 -15.07035 -14.81773 -14.45428 -14.38319 -14.20207 -13.90416 -13.75492 -13.57839 -13.17463 -12.96465 -12.82235 -12.73750 -12.67763 -12.44787 -12.42491 -12.26198 -12.01422 -11.95300 -11.63709 -11.44976 -11.18954 -11.05792 -10.54854 -10.22765 -9.92458 -9.86604 -8.16228 -6.28125 0.67652 1.02388 1.44043 1.46043 1.50060 1.56852 1.76310 2.44037 2.77952 3.17957 3.43038 3.69254 3.77203 3.91235 4.01447 4.09336 4.28752 4.35004 4.37703 4.41919 4.51375 4.54913 4.60588 4.63461 4.73107 4.76907 4.79939 4.89180 5.01978 5.05215 5.09021 5.16635 5.18175 5.36118 5.45074 5.51237 5.53705 5.68517 5.70083 5.83514 5.95321 6.17602 6.21143 6.87833 7.41296 7.69197 8.96374 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.037475 B = 0.003493 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.978942 B = 8015.139311 C = 8160.163980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.135 4.135 3 C -0.119 4.119 4 C 0.105 3.895 5 N -0.449 5.449 6 C 0.033 3.967 7 C 0.332 3.668 8 N -0.350 5.350 9 N -0.329 5.329 10 C 0.204 3.796 11 C 0.008 3.992 12 H 0.099 0.901 13 C -0.117 4.117 14 C 0.050 3.950 15 C -0.528 4.528 16 H 0.078 0.922 17 C -0.003 4.003 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.256 1.256 23 N -0.467 5.467 24 C 0.072 3.928 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.034 0.966 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.075 0.925 38 H -0.011 1.011 39 H -0.021 1.021 40 H 0.262 0.738 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 16.508 5.793 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.176 4.176 4 C -0.022 4.022 5 N -0.174 5.174 6 C -0.114 4.114 7 C -0.025 4.025 8 N -0.194 5.194 9 N -0.169 5.169 10 C -0.065 4.065 11 C -0.013 4.013 12 H 0.117 0.883 13 C -0.175 4.175 14 C 0.012 3.988 15 C -0.566 4.566 16 H 0.096 0.904 17 C -0.200 4.200 18 N -0.578 5.578 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.180 1.180 23 N -0.159 5.159 24 C -0.069 4.069 25 H 0.138 0.862 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.007 0.993 39 H -0.003 1.003 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.237 16.483 6.382 23.336 hybrid contribution 0.395 -0.774 -0.932 1.275 sum -14.842 15.709 5.450 22.288 Atomic orbital electron populations 1.23857 0.94770 1.02789 0.98386 1.21498 0.95643 0.94060 1.02383 1.20958 0.99643 0.93756 1.03215 1.21179 0.99167 0.96222 0.85602 1.59001 1.41234 0.94920 1.22278 1.22612 0.93566 0.96243 0.98975 1.22626 0.93659 0.90985 0.95276 1.74433 1.15998 1.04231 1.24690 1.73941 1.22059 1.05440 1.15414 1.25438 0.90536 0.92837 0.97651 1.19788 1.00822 0.83857 0.96823 0.88334 1.21583 1.00603 0.98689 0.96675 1.18850 0.91381 0.95325 0.93212 1.21579 0.99923 1.05351 1.29728 0.90392 1.26024 0.94808 1.01597 0.97600 1.70152 1.04765 1.40828 1.42070 0.85414 0.77504 0.78977 0.78950 1.19702 1.21584 1.17967 1.46458 1.26875 1.08597 1.33957 1.22371 0.85774 1.06400 0.92357 0.86217 0.88671 0.92402 0.90102 0.90433 0.91233 0.93508 0.92184 0.86648 0.94760 0.94168 0.91897 0.90584 0.99274 1.00299 0.92976 0.87984 0.87083 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 13.93 67.79 0.94 -1.19 16 2 C -0.14 -2.14 5.10 -16.48 -0.08 -2.22 16 3 C -0.12 -1.41 8.44 71.24 0.60 -0.81 16 4 C 0.10 2.35 4.93 85.56 0.42 2.77 16 5 N -0.45 -11.32 4.74 -735.30 -3.48 -14.81 16 6 C 0.03 0.73 8.61 127.69 1.10 1.83 16 7 C 0.33 11.25 6.42 260.11 1.67 12.92 16 8 N -0.35 -14.70 12.13 -58.00 -0.70 -15.41 16 9 N -0.33 -15.34 12.18 -49.54 -0.60 -15.95 16 10 C 0.20 8.38 6.58 137.64 0.91 9.29 16 11 C 0.01 0.33 2.71 -11.54 -0.03 0.30 16 12 H 0.10 3.52 7.08 -2.39 -0.02 3.50 16 13 C -0.12 -4.40 8.98 71.98 0.65 -3.76 16 14 C 0.05 2.70 4.43 29.85 0.13 2.84 16 15 C -0.53 -28.79 8.41 25.60 0.22 -28.58 16 16 H 0.08 3.87 7.05 -2.91 -0.02 3.85 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.94 -58.09 13.29 21.44 0.28 -57.81 16 19 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 N -0.47 -15.46 3.21 -538.17 -1.73 -17.19 16 24 C 0.07 1.57 10.82 127.77 1.38 2.95 16 25 H 0.12 1.13 8.05 -2.91 -0.02 1.10 16 26 H 0.09 1.33 7.99 -2.91 -0.02 1.31 16 27 H 0.06 0.76 7.29 -2.39 -0.02 0.75 16 28 H 0.08 0.76 8.03 -2.38 -0.02 0.74 16 29 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.07 1.67 7.90 -2.39 -0.02 1.66 16 31 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 32 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 33 H 0.12 1.81 5.93 -2.39 -0.01 1.80 16 34 H 0.03 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 2.81 6.94 -2.39 -0.02 2.79 16 38 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 39 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.11 2.00 8.11 -2.39 -0.02 1.98 16 43 H 0.09 2.03 7.47 -2.38 -0.02 2.01 16 Total: -1.00 -74.17 354.51 5.13 -69.04 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.97 Total: 10.08 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 8.36 Total: -3.36 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -6.23 Total: -121.16 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -74.17 5.13 -69.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340074273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.832 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds