Wall clock time and date at job start Tue Mar 31 2020 00:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47309 * 2 1 4 4 C 1.36736 * 127.13832 * 91.38902 * 3 2 1 5 5 C 1.50701 * 126.34929 * 0.02562 * 4 3 2 6 6 C 1.53001 * 109.46505 * 90.00206 * 5 4 3 7 7 C 1.50706 * 109.47076 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99909 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00088 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00371 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99662 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47226 * 90.00310 * 11 9 7 13 13 H 1.48501 * 109.46586 * 209.99761 * 11 9 7 14 14 H 1.48493 * 109.47272 * 329.99647 * 11 9 7 15 15 N 1.30295 * 107.30536 * 179.97438 * 4 3 2 16 16 N 1.28522 * 110.05587 * 359.97438 * 15 4 3 17 17 C 1.31217 * 109.85937 * 359.74794 * 16 15 4 18 18 N 1.38577 * 126.47709 * 180.26008 * 17 16 15 19 19 C 1.46850 * 111.00126 * 63.30736 * 18 17 16 20 20 C 1.53036 * 109.52490 * 174.16549 * 19 18 17 21 21 C 1.53117 * 109.28200 * 59.17583 * 20 19 18 22 22 C 1.53116 * 109.15952 * 302.34970 * 21 20 19 23 23 C 1.46848 * 111.00017 * 299.10084 * 18 17 16 24 24 H 1.09001 * 109.47294 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47211 * 60.00448 * 1 2 3 26 26 H 1.08994 * 109.47413 * 300.00469 * 1 2 3 27 27 H 1.09005 * 109.47211 * 119.99552 * 2 1 3 28 28 H 1.08994 * 109.47413 * 239.99531 * 2 1 3 29 29 H 1.08995 * 109.47689 * 209.99692 * 5 4 3 30 30 H 1.08998 * 109.46962 * 330.00556 * 5 4 3 31 31 H 1.09006 * 109.47385 * 299.99905 * 6 5 4 32 32 H 1.08990 * 109.47490 * 60.00359 * 6 5 4 33 33 H 0.96994 * 120.00928 * 179.97438 * 10 9 7 34 34 H 1.09005 * 109.46112 * 294.18143 * 19 18 17 35 35 H 1.09004 * 109.46302 * 54.14786 * 19 18 17 36 36 H 1.09006 * 109.49848 * 299.23381 * 20 19 18 37 37 H 1.09005 * 109.50230 * 179.12115 * 20 19 18 38 38 H 1.08997 * 109.52702 * 182.43825 * 21 20 19 39 39 H 1.09002 * 109.57143 * 62.28395 * 21 20 19 40 40 H 1.08992 * 109.50303 * 297.70580 * 22 21 20 41 41 H 1.09007 * 109.53092 * 177.61282 * 22 21 20 42 42 H 1.09002 * 109.45869 * 305.85511 * 23 18 17 43 43 H 1.08996 * 109.46390 * 65.83086 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3185 2.1507 1.0897 5 6 2.2092 1.7350 2.5341 6 6 3.5321 1.1141 2.9875 7 6 3.4227 0.6978 4.4318 8 1 2.5017 0.8595 4.9721 9 6 4.4985 0.1106 5.0633 10 7 5.6199 -0.0868 4.4052 11 14 4.3626 -0.4061 6.8533 12 1 3.8717 -1.8055 6.9287 13 1 5.6975 -0.3145 7.4975 14 1 3.4110 0.4910 7.5566 15 7 2.7175 3.3096 0.6478 16 7 2.6906 3.3244 -0.6371 17 6 2.2746 2.1643 -1.0876 18 7 2.1211 1.8038 -2.4168 19 6 3.4107 1.8203 -3.1190 20 6 3.2271 1.2793 -4.5387 21 6 2.2085 2.1474 -5.2827 22 6 0.8894 2.1522 -4.5054 23 6 1.1408 2.6680 -3.0867 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.9886 2.6082 3.1479 30 1 1.4086 1.0033 2.6420 31 1 3.7528 0.2407 2.3737 32 1 4.3327 1.8457 2.8796 33 1 6.3768 -0.4996 4.8495 34 1 3.7858 2.8427 -3.1656 35 1 4.1247 1.1958 -2.5819 36 1 2.8652 0.2521 -4.4927 37 1 4.1814 1.3063 -5.0648 38 1 2.0422 1.7401 -6.2800 39 1 2.5872 3.1663 -5.3639 40 1 0.4907 1.1389 -4.4590 41 1 0.1729 2.8025 -5.0074 42 1 0.2060 2.6592 -2.5260 43 1 1.5265 3.6863 -3.1336 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341060599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:31 Heat of formation + Delta-G solvation = 60.288089 kcal Electronic energy + Delta-G solvation = -22213.334419 eV Core-core repulsion = 19101.030300 eV Total energy + Delta-G solvation = -3112.304119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.57923 -39.00865 -35.46567 -34.34083 -33.42956 -31.60440 -31.08192 -30.24840 -28.40494 -25.45016 -24.56969 -23.76609 -23.27665 -21.85334 -20.93967 -19.97312 -19.52377 -17.27326 -16.47192 -16.22355 -15.75034 -14.84907 -14.79008 -14.50756 -14.36211 -13.92209 -13.83829 -13.54885 -13.18565 -13.04194 -12.94241 -12.47902 -12.26043 -12.20094 -11.41910 -11.37768 -11.23796 -11.07113 -11.03225 -10.99316 -10.72222 -10.69528 -10.65608 -10.32613 -9.96253 -9.85906 -9.69614 -9.23171 -8.72668 -8.41920 -8.38955 -6.05794 -4.10084 2.12037 2.55166 3.28689 3.29084 3.36120 3.39548 3.77049 4.40824 4.54998 4.65710 4.68917 4.83268 4.99961 5.01870 5.06994 5.21275 5.22540 5.30126 5.33768 5.41272 5.44186 5.50692 5.61597 5.67386 5.68445 5.71114 5.73181 5.86456 5.89323 5.95199 6.04913 6.18034 6.36283 6.40706 6.48641 6.70053 6.71927 6.99161 7.52225 7.55138 7.68709 7.91520 8.28955 8.96015 9.19473 9.54614 11.05325 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.003775 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.938105 B = 7415.035187 C = 7558.148973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.462 5.462 4 C 0.216 3.784 5 C -0.032 4.032 6 C 0.032 3.968 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.272 1.272 15 N -0.300 5.300 16 N -0.315 5.315 17 C 0.320 3.680 18 N -0.459 5.459 19 C 0.065 3.935 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.115 4.115 23 C 0.068 3.932 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.014 0.986 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.200 -0.565 -18.152 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.155 5.155 4 C -0.051 4.051 5 C -0.072 4.072 6 C -0.007 4.007 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.197 1.197 15 N -0.139 5.139 16 N -0.159 5.159 17 C -0.036 4.036 18 N -0.185 5.185 19 C -0.062 4.062 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.059 4.059 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.711 0.298 -18.161 20.596 hybrid contribution -0.073 -0.987 0.953 1.374 sum -9.784 -0.688 -17.208 19.807 Atomic orbital electron populations 1.22086 0.94210 1.03003 1.02751 1.21822 0.95419 0.79133 1.05208 1.46401 1.49361 1.13777 1.05942 1.25624 0.98828 0.88030 0.92586 1.20452 1.02619 1.01449 0.82648 1.19074 0.89890 0.95591 0.96107 1.21138 0.98977 1.40061 0.96062 0.92278 1.25009 0.95255 0.95759 0.98212 1.69965 1.02999 1.43356 1.36753 0.86556 0.77474 0.78887 0.84877 1.20660 1.21179 1.19714 1.74040 1.19625 1.18155 1.02122 1.74470 1.19133 1.17805 1.04466 1.22123 1.05025 0.88598 0.87902 1.58525 1.11175 1.52927 0.95885 1.22145 0.88637 1.01207 0.94198 1.21607 0.99509 1.00148 0.94008 1.21598 0.95440 1.00298 0.98683 1.21607 0.97575 1.02148 0.93959 1.22098 0.94734 0.94594 0.94483 0.90512 0.92158 0.91910 0.87999 0.88692 0.89307 0.91171 0.96786 0.95620 0.92857 0.93011 0.90572 0.90983 0.90977 0.91629 0.91920 0.91020 0.91092 0.90897 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.24 37.16 0.38 -1.40 16 2 C 0.11 1.45 6.62 -4.05 -0.03 1.42 16 3 N -0.46 -7.98 2.81 -114.09 -0.32 -8.30 16 4 C 0.22 4.39 7.32 -154.02 -1.13 3.26 16 5 C -0.03 -0.65 5.35 -27.88 -0.15 -0.80 16 6 C 0.03 0.81 4.96 -27.88 -0.14 0.67 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 11 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 N -0.30 -6.65 12.18 32.99 0.40 -6.25 16 16 N -0.31 -6.42 12.19 30.31 0.37 -6.05 16 17 C 0.32 5.52 6.41 -318.88 -2.05 3.47 16 18 N -0.46 -6.16 4.67 -174.55 -0.82 -6.98 16 19 C 0.07 0.81 5.39 -3.83 -0.02 0.78 16 20 C -0.11 -1.02 6.09 -26.65 -0.16 -1.18 16 21 C -0.12 -0.96 6.00 -26.61 -0.16 -1.12 16 22 C -0.11 -0.96 6.09 -26.65 -0.16 -1.12 16 23 C 0.07 0.78 5.37 -3.83 -0.02 0.76 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.10 1.46 7.80 -51.93 -0.41 1.05 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 30 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -32.22 350.46 -10.95 -43.17 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.54 Total: -2.93 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -4.04 Total: -8.33 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.37 Total: -53.34 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.22 -10.95 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341060599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.454 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds