Wall clock time and date at job start Tue Mar 31 2020 00:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47309 * 2 1 4 4 C 1.36736 * 127.13832 * 91.38902 * 3 2 1 5 5 C 1.50701 * 126.34929 * 0.02562 * 4 3 2 6 6 C 1.53001 * 109.46505 * 90.00206 * 5 4 3 7 7 C 1.50706 * 109.47076 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99909 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00088 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00371 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99662 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47226 * 90.00310 * 11 9 7 13 13 H 1.48501 * 109.46586 * 209.99761 * 11 9 7 14 14 H 1.48493 * 109.47272 * 329.99647 * 11 9 7 15 15 N 1.30295 * 107.30536 * 179.97438 * 4 3 2 16 16 N 1.28522 * 110.05587 * 359.97438 * 15 4 3 17 17 C 1.31217 * 109.85937 * 359.74794 * 16 15 4 18 18 N 1.38577 * 126.47709 * 180.26008 * 17 16 15 19 19 C 1.46850 * 111.00126 * 63.30736 * 18 17 16 20 20 C 1.53036 * 109.52490 * 174.16549 * 19 18 17 21 21 C 1.53117 * 109.28200 * 59.17583 * 20 19 18 22 22 C 1.53116 * 109.15952 * 302.34970 * 21 20 19 23 23 C 1.46848 * 111.00017 * 299.10084 * 18 17 16 24 24 H 1.09001 * 109.47294 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47211 * 60.00448 * 1 2 3 26 26 H 1.08994 * 109.47413 * 300.00469 * 1 2 3 27 27 H 1.09005 * 109.47211 * 119.99552 * 2 1 3 28 28 H 1.08994 * 109.47413 * 239.99531 * 2 1 3 29 29 H 1.08995 * 109.47689 * 209.99692 * 5 4 3 30 30 H 1.08998 * 109.46962 * 330.00556 * 5 4 3 31 31 H 1.09006 * 109.47385 * 299.99905 * 6 5 4 32 32 H 1.08990 * 109.47490 * 60.00359 * 6 5 4 33 33 H 0.96994 * 120.00928 * 179.97438 * 10 9 7 34 34 H 1.09005 * 109.46112 * 294.18143 * 19 18 17 35 35 H 1.09004 * 109.46302 * 54.14786 * 19 18 17 36 36 H 1.09006 * 109.49848 * 299.23381 * 20 19 18 37 37 H 1.09005 * 109.50230 * 179.12115 * 20 19 18 38 38 H 1.08997 * 109.52702 * 182.43825 * 21 20 19 39 39 H 1.09002 * 109.57143 * 62.28395 * 21 20 19 40 40 H 1.08992 * 109.50303 * 297.70580 * 22 21 20 41 41 H 1.09007 * 109.53092 * 177.61282 * 22 21 20 42 42 H 1.09002 * 109.45869 * 305.85511 * 23 18 17 43 43 H 1.08996 * 109.46390 * 65.83086 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3185 2.1507 1.0897 5 6 2.2092 1.7350 2.5341 6 6 3.5321 1.1141 2.9875 7 6 3.4227 0.6978 4.4318 8 1 2.5017 0.8595 4.9721 9 6 4.4985 0.1106 5.0633 10 7 5.6199 -0.0868 4.4052 11 14 4.3626 -0.4061 6.8533 12 1 3.8717 -1.8055 6.9287 13 1 5.6975 -0.3145 7.4975 14 1 3.4110 0.4910 7.5566 15 7 2.7175 3.3096 0.6478 16 7 2.6906 3.3244 -0.6371 17 6 2.2746 2.1643 -1.0876 18 7 2.1211 1.8038 -2.4168 19 6 3.4107 1.8203 -3.1190 20 6 3.2271 1.2793 -4.5387 21 6 2.2085 2.1474 -5.2827 22 6 0.8894 2.1522 -4.5054 23 6 1.1408 2.6680 -3.0867 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.9886 2.6082 3.1479 30 1 1.4086 1.0033 2.6420 31 1 3.7528 0.2407 2.3737 32 1 4.3327 1.8457 2.8796 33 1 6.3768 -0.4996 4.8495 34 1 3.7858 2.8427 -3.1656 35 1 4.1247 1.1958 -2.5819 36 1 2.8652 0.2521 -4.4927 37 1 4.1814 1.3063 -5.0648 38 1 2.0422 1.7401 -6.2800 39 1 2.5872 3.1663 -5.3639 40 1 0.4907 1.1389 -4.4590 41 1 0.1729 2.8025 -5.0074 42 1 0.2060 2.6592 -2.5260 43 1 1.5265 3.6863 -3.1336 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341060599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:30 Heat of formation + Delta-G solvation = 43.133262 kcal Electronic energy + Delta-G solvation = -22214.078308 eV Core-core repulsion = 19101.030300 eV Total energy + Delta-G solvation = -3113.048008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.05191 -39.98766 -36.83579 -36.01629 -34.73600 -33.39227 -31.93305 -31.44334 -30.04841 -27.26330 -25.71677 -24.91429 -24.12476 -23.67871 -22.20472 -21.42588 -20.50112 -18.65333 -18.36200 -17.53486 -17.11967 -16.49841 -15.87689 -15.78267 -15.50496 -15.07620 -14.85304 -14.73972 -14.42933 -14.37317 -14.20057 -13.99231 -13.39217 -13.32516 -13.12368 -12.85523 -12.62546 -12.43831 -12.32531 -12.21814 -12.09797 -11.81688 -11.74597 -11.48260 -11.46800 -11.46536 -11.31379 -11.09995 -10.57793 -9.98659 -9.91415 -8.20846 -6.33505 0.68540 1.24166 1.43130 1.45063 1.56112 1.72470 2.41893 2.63650 3.13519 3.44677 3.66411 3.72688 3.86817 3.92885 4.05361 4.07377 4.19737 4.20988 4.34656 4.35049 4.45745 4.60694 4.61461 4.63038 4.71492 4.76528 4.78973 4.86280 4.93490 4.93757 5.06793 5.15579 5.16907 5.19723 5.25465 5.42689 5.46336 5.56694 5.59053 5.71779 5.77298 6.14418 6.22014 6.82242 7.36773 7.66463 8.91373 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.003775 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.938105 B = 7415.035187 C = 7558.148973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.099 3.901 3 N -0.459 5.459 4 C 0.201 3.799 5 C -0.015 4.015 6 C 0.043 3.957 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.969 3.031 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.260 1.260 15 N -0.336 5.336 16 N -0.350 5.350 17 C 0.337 3.663 18 N -0.450 5.450 19 C 0.063 3.937 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.106 4.106 23 C 0.066 3.934 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.097 0.903 31 H -0.006 1.006 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.035 0.965 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.203 -2.036 -19.180 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 N -0.151 5.151 4 C -0.067 4.067 5 C -0.054 4.054 6 C 0.005 3.995 7 C -0.577 4.577 8 H 0.091 0.909 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.793 3.207 12 H -0.193 1.193 13 H -0.213 1.213 14 H -0.184 1.184 15 N -0.176 5.176 16 N -0.194 5.194 17 C -0.020 4.020 18 N -0.177 5.177 19 C -0.064 4.064 20 C -0.144 4.144 21 C -0.158 4.158 22 C -0.144 4.144 23 C -0.061 4.061 24 H 0.125 0.875 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.013 0.987 32 H 0.000 1.000 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.742 -1.179 -19.201 22.538 hybrid contribution 0.576 -0.531 1.166 1.405 sum -11.166 -1.711 -18.035 21.280 Atomic orbital electron populations 1.22042 0.91707 1.04828 1.02425 1.22159 0.97423 0.77065 1.05556 1.46615 1.48634 1.14785 1.05053 1.25400 0.99883 0.88392 0.93065 1.20157 1.00539 1.01689 0.83045 1.18838 0.91171 0.93780 0.95738 1.21584 0.99574 1.39654 0.96882 0.90866 1.26001 0.94764 0.95711 1.03211 1.70118 1.03965 1.44449 1.38950 0.85386 0.77490 0.79061 0.78751 1.19330 1.21338 1.18419 1.73924 1.20634 1.19707 1.03297 1.74386 1.21220 1.19880 1.03881 1.22605 1.02318 0.87658 0.89452 1.58881 1.12029 1.52759 0.94058 1.22233 0.87753 1.00200 0.96234 1.21598 1.00881 1.00475 0.91428 1.21618 0.94618 1.00014 0.99581 1.21603 0.98384 1.02879 0.91508 1.22231 0.93688 0.93714 0.96449 0.87549 0.91877 0.92779 0.88919 0.87075 0.89326 0.88495 0.98742 0.99994 0.92784 0.94643 0.92266 0.90185 0.89535 0.89162 0.92329 0.90122 0.89100 0.91194 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 10.24 71.98 0.74 -2.26 16 2 C 0.10 2.58 6.62 86.38 0.57 3.15 16 3 N -0.46 -15.95 2.81 -514.87 -1.45 -17.40 16 4 C 0.20 8.41 7.32 137.64 1.01 9.41 16 5 C -0.01 -0.61 5.35 29.85 0.16 -0.45 16 6 C 0.04 2.28 4.96 29.85 0.15 2.43 16 7 C -0.54 -29.71 9.11 25.60 0.23 -29.47 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 9 C 0.00 0.06 5.46 84.66 0.46 0.52 16 10 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 11 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 13 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 14 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 15 N -0.34 -15.55 12.18 -49.54 -0.60 -16.15 16 16 N -0.35 -14.82 12.19 -58.00 -0.71 -15.53 16 17 C 0.34 11.78 6.41 260.11 1.67 13.45 16 18 N -0.45 -11.80 4.67 -706.14 -3.30 -15.10 16 19 C 0.06 1.53 5.39 86.32 0.47 2.00 16 20 C -0.11 -1.65 6.09 30.65 0.19 -1.46 16 21 C -0.12 -1.54 6.00 30.67 0.18 -1.36 16 22 C -0.11 -1.45 6.09 30.64 0.19 -1.27 16 23 C 0.07 1.44 5.37 86.33 0.46 1.90 16 24 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 2.60 7.80 -2.38 -0.02 2.59 16 28 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.10 3.49 7.87 -2.39 -0.02 3.47 16 31 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 32 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 36 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.38 350.46 3.69 -68.69 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.96 Total: 10.20 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.47 Total: -3.40 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -5.77 Total: -120.80 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -72.38 3.69 -68.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341060599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.826 kcal (2) G-P(sol) polarization free energy of solvation -72.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds