Wall clock time and date at job start Tue Mar 31 2020 00:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47311 * 2 1 4 4 C 1.52996 * 109.47241 * 119.99809 * 2 1 3 5 5 C 1.52995 * 117.49840 * 8.75030 * 4 2 1 6 6 C 1.52995 * 117.50358 * 300.08686 * 4 2 1 7 7 N 1.46901 * 109.47119 * 240.00176 * 2 1 3 8 8 C 1.46901 * 111.00032 * 306.04306 * 7 2 1 9 9 C 1.38579 * 111.00286 * 70.00097 * 7 2 1 10 10 N 1.31222 * 126.46899 * 293.56149 * 9 7 2 11 11 N 1.28529 * 109.85998 * 180.02562 * 10 9 7 12 12 C 1.30292 * 110.05232 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.34872 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46726 * 90.02931 * 13 12 11 15 15 C 1.50703 * 109.46550 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00601 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99079 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00517 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99486 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47199 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47067 * 119.99959 * 19 17 15 22 22 H 1.48502 * 109.46818 * 240.00054 * 19 17 15 23 23 N 1.36449 * 126.47937 * 113.87519 * 9 7 2 24 24 C 1.46499 * 127.13318 * 359.97438 * 23 9 7 25 25 H 1.09007 * 109.47311 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47629 * 299.99718 * 1 2 3 27 27 H 1.09002 * 109.47767 * 60.00376 * 1 2 3 28 28 H 1.09005 * 115.54915 * 154.41659 * 4 2 1 29 29 H 1.09002 * 117.50326 * 359.97438 * 5 4 2 30 30 H 1.09006 * 117.49846 * 145.02199 * 5 4 2 31 31 H 1.08997 * 117.50542 * 214.97886 * 6 4 2 32 32 H 1.09010 * 117.49520 * 359.97438 * 6 4 2 33 33 H 1.09003 * 109.47309 * 189.74723 * 8 7 2 34 34 H 1.09006 * 109.46891 * 309.74535 * 8 7 2 35 35 H 1.09004 * 109.46836 * 69.74555 * 8 7 2 36 36 H 1.09006 * 109.47080 * 330.04026 * 13 12 11 37 37 H 1.08991 * 109.47658 * 210.03334 * 13 12 11 38 38 H 1.08996 * 109.46722 * 60.00228 * 14 13 12 39 39 H 1.08994 * 109.47137 * 300.00116 * 14 13 12 40 40 H 0.97003 * 120.00006 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.47167 * 274.95168 * 24 23 9 42 42 H 1.08995 * 109.47370 * 34.95081 * 24 23 9 43 43 H 1.09001 * 109.47202 * 154.95289 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.0108 -1.4565 2.1100 6 6 1.6341 -0.1507 2.6096 7 7 2.0196 -0.6925 -1.1995 8 6 1.4343 -2.0355 -1.3078 9 6 1.7680 0.0525 -2.3406 10 7 0.5894 0.3339 -2.8442 11 7 0.7268 1.0436 -3.9070 12 6 1.9907 1.2558 -4.1421 13 6 2.5655 2.0421 -5.2920 14 6 2.7068 3.5105 -4.8856 15 6 3.2810 4.2969 -6.0358 16 1 3.5208 3.7994 -6.9638 17 6 3.5002 5.6517 -5.9030 18 7 3.2078 6.2577 -4.7730 19 14 4.2114 6.6268 -7.3289 20 1 4.4511 5.7185 -8.4790 21 1 3.2542 7.6896 -7.7280 22 1 5.4949 7.2472 -6.9129 23 7 2.6991 0.6270 -3.1560 24 6 4.1555 0.5826 -3.0042 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8900 28 1 3.0329 -1.1627 1.1647 29 1 -0.0297 -1.4262 1.7867 30 1 1.3269 -2.3816 2.5922 31 1 2.3598 -0.2172 3.4201 32 1 1.0039 0.7388 2.6146 33 1 1.9387 -2.5888 -2.1000 34 1 1.5568 -2.5626 -0.3616 35 1 0.3730 -1.9514 -1.5422 36 1 1.9009 1.9658 -6.1526 37 1 3.5450 1.6414 -5.5526 38 1 3.3712 3.5869 -4.0250 39 1 1.7272 3.9112 -4.6251 40 1 3.3617 7.2109 -4.6799 41 1 4.4748 1.3764 -2.3289 42 1 4.4487 -0.3835 -2.5935 43 1 4.6266 0.7219 -3.9772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351094378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:40 Heat of formation + Delta-G solvation = 109.621245 kcal Electronic energy + Delta-G solvation = -22054.541377 eV Core-core repulsion = 18944.376504 eV Total energy + Delta-G solvation = -3110.164873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59745 -39.34035 -36.14946 -34.78929 -33.80452 -31.74091 -29.94768 -28.64293 -27.34474 -26.40537 -25.38730 -24.20468 -22.56899 -21.88910 -20.81745 -19.93591 -19.13653 -16.99263 -16.78460 -16.40145 -15.91783 -15.61971 -14.85275 -14.57267 -14.45009 -13.91939 -13.60654 -13.16895 -13.03683 -12.70255 -12.46193 -12.33665 -12.21934 -12.14916 -11.78740 -11.58940 -11.34843 -11.20870 -11.01502 -10.79064 -10.67107 -10.56101 -10.32935 -10.14055 -9.96783 -9.86477 -9.68007 -9.22177 -8.75718 -8.42366 -8.38307 -6.06276 -4.10427 2.09611 2.55635 3.25499 3.28255 3.36254 3.39807 3.55706 3.83196 4.40565 4.51544 4.70793 4.80708 4.87891 4.96179 5.04917 5.11451 5.21856 5.29910 5.31869 5.35040 5.39292 5.44182 5.56637 5.64550 5.65641 5.68712 5.75698 5.87904 5.90166 5.92186 6.03985 6.30008 6.35495 6.42346 6.45693 6.68760 6.69577 6.98442 7.49940 7.55202 7.68320 7.91193 8.28609 8.95931 9.17239 9.54320 11.04849 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.003641 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.180175 B = 7687.876094 C = 8020.211468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.123 3.877 3 H 0.085 0.915 4 C -0.141 4.141 5 C -0.186 4.186 6 C -0.174 4.174 7 N -0.458 5.458 8 C 0.034 3.966 9 C 0.319 3.681 10 N -0.310 5.310 11 N -0.300 5.300 12 C 0.215 3.785 13 C -0.032 4.032 14 C 0.032 3.968 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 N -0.467 5.467 24 C 0.084 3.916 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.014 0.986 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -16.492 12.181 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.015 3.985 3 H 0.103 0.897 4 C -0.160 4.160 5 C -0.223 4.223 6 C -0.212 4.212 7 N -0.182 5.182 8 C -0.114 4.114 9 C -0.038 4.038 10 N -0.154 5.154 11 N -0.140 5.140 12 C -0.052 4.052 13 C -0.071 4.071 14 C -0.007 4.007 15 C -0.562 4.562 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 N -0.159 5.159 24 C -0.060 4.060 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.437 -16.358 12.143 20.377 hybrid contribution 1.133 0.705 -0.443 1.406 sum 0.697 -15.654 11.700 19.555 Atomic orbital electron populations 1.22679 0.95740 1.02815 1.03764 1.21180 0.93961 0.97118 0.86236 0.89702 1.22220 0.99769 1.03593 0.90392 1.23207 0.99224 0.95921 1.03968 1.22970 1.03768 0.97699 0.96729 1.58781 1.58994 1.02428 0.98010 1.22411 0.98949 0.87337 1.02683 1.22138 0.85335 1.01689 0.94597 1.74440 1.19816 1.14617 1.06558 1.74045 1.14665 1.14793 1.10483 1.25631 0.88511 0.97240 0.93788 1.20460 0.99249 0.96687 0.90751 1.19073 0.97930 0.86681 0.96982 1.21178 1.42474 0.93264 0.99268 0.92226 1.25018 0.95567 0.97870 0.95826 1.69983 1.47992 1.10222 1.24868 0.86501 0.78708 0.80108 0.82485 1.19614 1.20915 1.21029 1.46201 1.08716 1.39886 1.21099 1.21971 0.75793 1.03869 1.04339 0.91817 0.92217 0.89676 0.87024 0.88050 0.89017 0.88715 0.88692 0.91647 0.90108 0.93190 0.89269 0.91176 0.96727 0.95644 0.92920 0.90216 0.89475 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 6.99 37.15 0.26 -2.08 16 2 C 0.12 1.48 2.68 -67.72 -0.18 1.30 16 3 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 4 C -0.14 -1.31 4.76 -90.63 -0.43 -1.74 16 5 C -0.19 -1.47 9.25 -26.70 -0.25 -1.72 16 6 C -0.17 -1.44 9.90 -26.70 -0.26 -1.71 16 7 N -0.46 -6.00 4.74 -174.75 -0.83 -6.83 16 8 C 0.03 0.37 8.55 60.07 0.51 0.89 16 9 C 0.32 5.37 6.27 -318.88 -2.00 3.37 16 10 N -0.31 -6.07 9.83 30.31 0.30 -5.77 16 11 N -0.30 -6.51 12.18 32.99 0.40 -6.11 16 12 C 0.22 4.31 7.32 -154.02 -1.13 3.18 16 13 C -0.03 -0.64 5.52 -27.88 -0.15 -0.80 16 14 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 15 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 N -0.47 -7.97 3.21 -121.46 -0.39 -8.36 16 24 C 0.08 1.08 11.09 59.85 0.66 1.74 16 25 H 0.06 0.70 5.38 -51.93 -0.28 0.42 16 26 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 27 H 0.08 1.33 6.00 -51.93 -0.31 1.02 16 28 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 0.82 5.85 -51.93 -0.30 0.52 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.82 7.60 -51.92 -0.39 0.42 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.71 6.75 -51.93 -0.35 0.36 16 35 H 0.05 0.61 6.60 -51.93 -0.34 0.27 16 36 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.07 1.26 7.18 -51.93 -0.37 0.89 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.10 7.11 -51.93 -0.37 0.73 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -31.94 342.89 -10.01 -41.95 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.86 Total: -0.50 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.52 Total: -9.94 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.22 Total: -52.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.94 -10.01 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351094378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.571 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds