Wall clock time and date at job start Tue Mar 31 2020 01:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47051 * 2 1 4 4 N 1.46895 * 109.46782 * 119.99477 * 2 1 3 5 5 C 1.46899 * 111.00546 * 274.47553 * 4 2 1 6 6 C 1.53004 * 109.47267 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.46577 * 55.00452 * 6 5 4 8 8 C 1.47197 * 109.47074 * 295.00446 * 6 5 4 9 9 N 4.90938 * 82.28492 * 118.89244 * 2 1 3 10 10 C 1.52995 * 109.46682 * 174.99923 * 6 5 4 11 11 C 1.50707 * 109.46825 * 184.99912 * 10 6 5 12 12 H 1.07999 * 120.00043 * 0.02562 * 11 10 6 13 13 C 1.37873 * 119.99807 * 180.02562 * 11 10 6 14 14 N 1.31513 * 120.00430 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99660 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47049 * 60.00604 * 15 13 11 17 17 H 1.48507 * 109.47263 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47601 * 300.00067 * 15 13 11 19 19 C 1.52999 * 109.47283 * 239.99882 * 2 1 3 20 20 C 1.45539 * 108.89273 * 301.58428 * 19 2 1 21 21 C 1.54248 * 112.40364 * 182.69181 * 20 19 2 22 22 C 1.50470 * 108.51820 * 280.00302 * 21 20 19 23 23 C 1.54068 * 112.49958 * 94.15130 * 22 21 20 24 24 C 1.54076 * 112.81619 * 318.28945 * 23 22 21 25 25 C 1.50475 * 112.49439 * 318.27720 * 24 23 22 26 26 H 1.09005 * 109.47009 * 60.00226 * 1 2 3 27 27 H 1.08999 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47421 * 300.00339 * 1 2 3 29 29 H 1.00913 * 110.99441 * 150.52352 * 4 2 1 30 30 H 1.08999 * 109.47128 * 300.00707 * 5 4 2 31 31 H 1.09000 * 109.46542 * 60.00061 * 5 4 2 32 32 H 1.09000 * 109.47618 * 305.00091 * 10 6 5 33 33 H 1.09001 * 109.47267 * 65.00962 * 10 6 5 34 34 H 0.97004 * 119.99936 * 179.97438 * 14 13 11 35 35 H 1.08993 * 108.79196 * 183.02481 * 19 2 1 36 36 H 1.09003 * 108.89969 * 61.93226 * 20 19 2 37 37 H 1.09002 * 108.89008 * 303.43997 * 20 19 2 38 38 H 1.08991 * 109.62846 * 39.71911 * 21 20 19 39 39 H 1.09000 * 109.62459 * 160.30008 * 21 20 19 40 40 H 1.08992 * 108.88133 * 214.92996 * 22 21 20 41 41 H 1.09000 * 108.87562 * 333.37971 * 22 21 20 42 42 H 1.08999 * 108.81861 * 197.42410 * 23 22 21 43 43 H 1.09004 * 108.72436 * 79.08319 * 23 22 21 44 44 H 1.08994 * 108.87548 * 197.50094 * 24 23 22 45 45 H 1.08992 * 108.87650 * 79.05429 * 24 23 22 46 46 H 1.08997 * 109.62669 * 334.44392 * 25 24 23 47 47 H 1.08995 * 109.62643 * 213.86168 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0942 0.2257 2.3438 6 6 2.6075 -0.5299 3.5713 7 1 3.5588 -1.0058 3.3332 8 6 1.6281 -1.5578 3.9598 9 7 0.8709 -2.3506 4.2594 10 6 2.8037 0.4512 4.7287 11 6 3.4243 -0.2691 5.8980 12 1 3.6560 -1.3213 5.8229 13 6 3.6962 0.4152 7.0637 14 7 3.4136 1.6963 7.1554 15 14 4.4661 -0.4775 8.5127 16 1 5.7820 -1.0346 8.1085 17 1 4.6554 0.4744 9.6368 18 1 3.5727 -1.5820 8.9453 19 6 2.0400 -0.7213 -1.2492 20 6 1.5172 -2.0795 -1.2556 21 6 2.0368 -2.9038 -2.4514 22 6 1.2327 -2.5381 -3.6694 23 6 1.9024 -1.4327 -4.5080 24 6 2.5075 -0.3104 -3.6431 25 6 1.6134 0.0788 -2.4970 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.9134 -1.1276 1.0262 30 1 2.7756 1.0435 2.1097 31 1 1.1026 0.6274 2.5524 32 1 3.4601 1.2614 4.4111 33 1 1.8382 0.8609 5.0254 34 1 3.6047 2.1776 7.9757 35 1 3.1285 -0.7622 -1.2112 36 1 0.4289 -2.0387 -1.3013 37 1 1.8115 -2.5753 -0.3306 38 1 3.0883 -2.6750 -2.6244 39 1 1.9202 -3.9670 -2.2413 40 1 1.1092 -3.4255 -4.2900 41 1 0.2489 -2.1925 -3.3518 42 1 1.1586 -0.9991 -5.1765 43 1 2.6949 -1.8802 -5.1079 44 1 2.6784 0.5647 -4.2699 45 1 3.4640 -0.6489 -3.2450 46 1 0.5780 -0.1542 -2.7450 47 1 1.7145 1.1460 -2.2999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473368770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:53 Heat of formation + Delta-G solvation = -15.156433 kcal Electronic energy + Delta-G solvation = -21963.751626 eV Core-core repulsion = 18951.716330 eV Total energy + Delta-G solvation = -3012.035296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89512 -37.27512 -35.68178 -33.84675 -32.74313 -32.28029 -30.96372 -28.97605 -26.48649 -25.01856 -24.84762 -22.91440 -21.80234 -21.60083 -19.46393 -19.32598 -17.11253 -16.41105 -15.92670 -15.34327 -15.21899 -14.87181 -14.54453 -14.37544 -13.84292 -13.70037 -13.21421 -13.04242 -12.76794 -12.75462 -12.39267 -12.25483 -12.09847 -11.93108 -11.74950 -11.69508 -11.24307 -11.18704 -11.02959 -10.83806 -10.81587 -10.64647 -10.54373 -10.50948 -10.40749 -10.31961 -10.20252 -10.08335 -9.49702 -9.21564 -8.44912 -8.22736 -6.08833 -4.12042 3.31540 3.35789 3.39602 3.77306 3.86936 4.21897 4.40902 4.42996 4.52490 4.67130 4.90334 4.94015 4.94840 5.00357 5.11650 5.18158 5.29091 5.29447 5.46365 5.46437 5.52004 5.60670 5.65251 5.75183 5.77695 5.83619 5.87737 5.92399 5.98594 6.00628 6.02577 6.03913 6.09549 6.23594 6.24780 6.29971 6.36561 6.45562 6.51458 6.53971 7.20772 7.43334 7.53290 7.57547 7.86319 8.24134 8.62246 8.92611 9.53352 11.02036 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.003095 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.032770 B = 9043.337871 C = 9225.799540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.044 0.956 4 N -0.688 5.688 5 C 0.067 3.933 6 C 0.009 3.991 7 H 0.098 0.902 8 C 0.256 3.744 9 N -0.480 5.480 10 C 0.032 3.968 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.082 4.082 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.110 4.110 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.340 0.660 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 -2.163 -23.379 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 H 0.062 0.938 4 N -0.320 5.320 5 C -0.063 4.063 6 C -0.013 4.013 7 H 0.116 0.884 8 C -0.061 4.061 9 N -0.157 5.157 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.100 4.100 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.148 4.148 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.158 0.842 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.252 -3.445 -22.629 23.120 hybrid contribution 1.523 0.456 0.603 1.700 sum -1.729 -2.990 -22.026 22.295 Atomic orbital electron populations 1.21872 0.94905 1.02319 1.00910 1.21625 0.96018 0.95683 0.89054 0.93808 1.60599 1.33640 1.33294 1.04498 1.22103 1.01495 0.93579 0.89121 1.19210 0.93183 0.92273 0.96587 0.88431 1.28870 0.93233 0.93041 0.90920 1.81000 1.11570 1.11936 1.11215 1.19156 0.98236 0.93101 0.90162 1.21116 1.41328 0.95943 0.98100 0.92559 1.24952 0.95558 0.94827 0.98624 1.69930 1.47655 1.07947 1.27551 0.86656 0.79884 0.79545 0.82002 1.20055 1.21196 1.20219 1.20262 1.00054 0.95735 0.93986 1.20566 1.01122 0.94925 0.98572 1.21345 0.99919 0.99442 0.94910 1.21347 0.99592 0.97792 0.96856 1.21905 0.99728 0.95890 0.97806 1.21324 0.99355 0.97811 0.97073 1.21386 1.00009 0.99281 0.94126 0.92880 0.91852 0.92896 0.84181 0.93431 0.90625 0.94521 0.95613 0.92750 0.91693 0.91761 0.90874 0.91923 0.92223 0.92834 0.92122 0.92629 0.92647 0.92595 0.92103 0.91462 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.75 37.16 0.33 -1.26 16 2 C 0.09 0.92 2.31 -67.72 -0.16 0.77 16 3 H 0.04 0.48 7.68 -51.93 -0.40 0.08 16 4 N -0.69 -8.72 5.17 -106.73 -0.55 -9.28 16 5 C 0.07 0.99 4.85 -3.82 -0.02 0.97 16 6 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 7 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 8 C 0.26 5.39 13.67 -20.74 -0.28 5.11 16 9 N -0.48 -11.02 18.54 42.17 0.78 -10.24 16 10 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 11 C -0.53 -14.10 8.60 -34.44 -0.30 -14.40 16 12 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.08 -0.74 1.41 -93.49 -0.13 -0.87 16 20 C -0.11 -1.09 4.06 -29.60 -0.12 -1.21 16 21 C -0.12 -1.00 5.61 -27.34 -0.15 -1.15 16 22 C -0.12 -0.91 5.31 -27.44 -0.15 -1.06 16 23 C -0.12 -0.83 5.85 -25.61 -0.15 -0.98 16 24 C -0.12 -0.88 5.31 -27.43 -0.15 -1.02 16 25 C -0.11 -0.88 4.13 -27.34 -0.11 -1.00 16 26 H 0.05 0.50 7.03 -51.93 -0.36 0.14 16 27 H 0.06 0.75 6.40 -51.93 -0.33 0.42 16 28 H 0.05 0.65 7.49 -51.93 -0.39 0.26 16 29 H 0.34 3.94 8.08 -39.29 -0.32 3.63 16 30 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 31 H 0.08 1.18 7.47 -51.93 -0.39 0.79 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 36 H 0.06 0.65 5.59 -51.93 -0.29 0.36 16 37 H 0.07 0.82 7.16 -51.93 -0.37 0.44 16 38 H 0.06 0.52 6.98 -51.93 -0.36 0.16 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.49 6.63 -51.93 -0.34 0.15 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.47 6.63 -51.93 -0.34 0.13 16 46 H 0.07 0.55 6.50 -51.93 -0.34 0.22 16 47 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -29.34 357.96 -8.86 -38.20 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.37 Total: -1.63 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.83 Total: -13.89 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.97 Total: -44.45 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.34 -8.86 -38.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473368770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.040 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds