Wall clock time and date at job start Tue Mar 31 2020 01:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47051 * 2 1 4 4 N 1.46895 * 109.46782 * 119.99477 * 2 1 3 5 5 C 1.46899 * 111.00546 * 274.47553 * 4 2 1 6 6 C 1.53004 * 109.47267 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.46577 * 55.00452 * 6 5 4 8 8 C 1.47197 * 109.47074 * 295.00446 * 6 5 4 9 9 N 4.90938 * 82.28492 * 118.89244 * 2 1 3 10 10 C 1.52995 * 109.46682 * 174.99923 * 6 5 4 11 11 C 1.50707 * 109.46825 * 184.99912 * 10 6 5 12 12 H 1.07999 * 120.00043 * 0.02562 * 11 10 6 13 13 C 1.37873 * 119.99807 * 180.02562 * 11 10 6 14 14 N 1.31513 * 120.00430 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99660 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47049 * 60.00604 * 15 13 11 17 17 H 1.48507 * 109.47263 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47601 * 300.00067 * 15 13 11 19 19 C 1.52999 * 109.47283 * 239.99882 * 2 1 3 20 20 C 1.45539 * 108.89273 * 301.58428 * 19 2 1 21 21 C 1.54248 * 112.40364 * 182.69181 * 20 19 2 22 22 C 1.50470 * 108.51820 * 280.00302 * 21 20 19 23 23 C 1.54068 * 112.49958 * 94.15130 * 22 21 20 24 24 C 1.54076 * 112.81619 * 318.28945 * 23 22 21 25 25 C 1.50475 * 112.49439 * 318.27720 * 24 23 22 26 26 H 1.09005 * 109.47009 * 60.00226 * 1 2 3 27 27 H 1.08999 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47421 * 300.00339 * 1 2 3 29 29 H 1.00913 * 110.99441 * 150.52352 * 4 2 1 30 30 H 1.08999 * 109.47128 * 300.00707 * 5 4 2 31 31 H 1.09000 * 109.46542 * 60.00061 * 5 4 2 32 32 H 1.09000 * 109.47618 * 305.00091 * 10 6 5 33 33 H 1.09001 * 109.47267 * 65.00962 * 10 6 5 34 34 H 0.97004 * 119.99936 * 179.97438 * 14 13 11 35 35 H 1.08993 * 108.79196 * 183.02481 * 19 2 1 36 36 H 1.09003 * 108.89969 * 61.93226 * 20 19 2 37 37 H 1.09002 * 108.89008 * 303.43997 * 20 19 2 38 38 H 1.08991 * 109.62846 * 39.71911 * 21 20 19 39 39 H 1.09000 * 109.62459 * 160.30008 * 21 20 19 40 40 H 1.08992 * 108.88133 * 214.92996 * 22 21 20 41 41 H 1.09000 * 108.87562 * 333.37971 * 22 21 20 42 42 H 1.08999 * 108.81861 * 197.42410 * 23 22 21 43 43 H 1.09004 * 108.72436 * 79.08319 * 23 22 21 44 44 H 1.08994 * 108.87548 * 197.50094 * 24 23 22 45 45 H 1.08992 * 108.87650 * 79.05429 * 24 23 22 46 46 H 1.08997 * 109.62669 * 334.44392 * 25 24 23 47 47 H 1.08995 * 109.62643 * 213.86168 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0942 0.2257 2.3438 6 6 2.6075 -0.5299 3.5713 7 1 3.5588 -1.0058 3.3332 8 6 1.6281 -1.5578 3.9598 9 7 0.8709 -2.3506 4.2594 10 6 2.8037 0.4512 4.7287 11 6 3.4243 -0.2691 5.8980 12 1 3.6560 -1.3213 5.8229 13 6 3.6962 0.4152 7.0637 14 7 3.4136 1.6963 7.1554 15 14 4.4661 -0.4775 8.5127 16 1 5.7820 -1.0346 8.1085 17 1 4.6554 0.4744 9.6368 18 1 3.5727 -1.5820 8.9453 19 6 2.0400 -0.7213 -1.2492 20 6 1.5172 -2.0795 -1.2556 21 6 2.0368 -2.9038 -2.4514 22 6 1.2327 -2.5381 -3.6694 23 6 1.9024 -1.4327 -4.5080 24 6 2.5075 -0.3104 -3.6431 25 6 1.6134 0.0788 -2.4970 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.9134 -1.1276 1.0262 30 1 2.7756 1.0435 2.1097 31 1 1.1026 0.6274 2.5524 32 1 3.4601 1.2614 4.4111 33 1 1.8382 0.8609 5.0254 34 1 3.6047 2.1776 7.9757 35 1 3.1285 -0.7622 -1.2112 36 1 0.4289 -2.0387 -1.3013 37 1 1.8115 -2.5753 -0.3306 38 1 3.0883 -2.6750 -2.6244 39 1 1.9202 -3.9670 -2.2413 40 1 1.1092 -3.4255 -4.2900 41 1 0.2489 -2.1925 -3.3518 42 1 1.1586 -0.9991 -5.1765 43 1 2.6949 -1.8802 -5.1079 44 1 2.6784 0.5647 -4.2699 45 1 3.4640 -0.6489 -3.2450 46 1 0.5780 -0.1542 -2.7450 47 1 1.7145 1.1460 -2.2999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473368770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:52 Heat of formation + Delta-G solvation = -30.091351 kcal Electronic energy + Delta-G solvation = -21964.399253 eV Core-core repulsion = 18951.716330 eV Total energy + Delta-G solvation = -3012.682922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66513 -38.62030 -36.90038 -35.56250 -34.27706 -32.92692 -32.30032 -29.99874 -28.10608 -25.93622 -25.52654 -24.28471 -23.43081 -22.54554 -20.17079 -20.04545 -18.63785 -18.33372 -16.82501 -16.63268 -16.15615 -16.08796 -15.66429 -15.22992 -15.15839 -14.85385 -14.40586 -14.19570 -13.82427 -13.76732 -13.67017 -13.47928 -13.45673 -13.10940 -13.03814 -12.95320 -12.63695 -12.52856 -12.44338 -12.30718 -12.15199 -11.85037 -11.54682 -11.45733 -11.35030 -11.18825 -11.16237 -11.08293 -11.02079 -10.74140 -10.55231 -9.24563 -8.19519 -6.27974 1.40745 1.42735 1.49653 2.08509 2.15387 2.41455 3.15517 3.21374 3.38450 3.70608 3.82557 4.02173 4.17183 4.19989 4.31664 4.34770 4.40808 4.48276 4.50153 4.60511 4.66873 4.73016 4.78630 4.80761 4.85901 4.93188 5.00651 5.05282 5.11320 5.20626 5.21853 5.23411 5.39093 5.41815 5.42230 5.46302 5.47790 5.53235 5.59479 5.62397 5.67247 5.72339 5.79194 6.13071 6.24681 6.60581 6.83390 6.94891 7.40641 8.91241 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.003095 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.032770 B = 9043.337871 C = 9225.799540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.088 3.912 3 H 0.049 0.951 4 N -0.695 5.695 5 C 0.080 3.920 6 C 0.020 3.980 7 H 0.120 0.880 8 C 0.267 3.733 9 N -0.516 5.516 10 C 0.039 3.961 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.948 3.052 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.074 4.074 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.106 4.106 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.348 0.652 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.035 0.965 33 H -0.002 1.002 34 H 0.264 0.736 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -2.328 -24.869 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 H 0.067 0.933 4 N -0.327 5.327 5 C -0.050 4.050 6 C -0.001 4.001 7 H 0.137 0.863 8 C -0.049 4.049 9 N -0.194 5.194 10 C 0.000 4.000 11 C -0.578 4.578 12 H 0.073 0.927 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.774 3.226 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.092 4.092 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.144 4.144 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.168 0.832 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.017 0.983 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.278 -3.620 -24.136 24.512 hybrid contribution 1.191 0.500 1.046 1.662 sum -1.087 -3.120 -23.090 23.325 Atomic orbital electron populations 1.21855 0.95295 1.01621 1.00977 1.21667 0.95628 0.95987 0.88881 0.93301 1.60525 1.34343 1.33157 1.04722 1.21880 1.01071 0.93674 0.88395 1.19182 0.93785 0.90889 0.96292 0.86274 1.29380 0.92845 0.92738 0.89979 1.80998 1.12852 1.13272 1.12241 1.18976 0.96291 0.93760 0.90996 1.21541 1.40898 0.96063 0.99324 0.92738 1.25722 0.96272 0.95540 1.01262 1.70028 1.48899 1.09186 1.28274 0.85751 0.79435 0.78270 0.79137 1.18623 1.20719 1.20754 1.20200 1.00154 0.95279 0.93611 1.20504 1.00650 0.95290 0.98260 1.21308 1.00165 0.99052 0.94730 1.21327 0.99238 0.98292 0.96643 1.21896 0.99962 0.95607 0.97726 1.21308 0.99032 0.98194 0.96915 1.21350 1.00089 0.99237 0.93719 0.91109 0.92912 0.94520 0.83245 0.91757 0.91720 0.94688 0.98344 0.92704 0.91251 0.92526 0.92650 0.91591 0.92518 0.92369 0.92597 0.92149 0.92170 0.91846 0.92254 0.91571 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.75 71.98 0.63 -2.35 16 2 C 0.09 1.75 2.31 44.92 0.10 1.85 16 3 H 0.05 0.96 7.68 -2.39 -0.02 0.94 16 4 N -0.69 -16.67 5.17 -491.58 -2.54 -19.21 16 5 C 0.08 2.27 4.85 86.30 0.42 2.68 16 6 C 0.02 0.73 2.35 -12.60 -0.03 0.70 16 7 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 8 C 0.27 11.13 13.67 89.43 1.22 12.36 16 9 N -0.52 -23.71 18.54 20.01 0.37 -23.33 16 10 C 0.04 1.79 4.42 29.85 0.13 1.92 16 11 C -0.54 -28.78 8.60 25.60 0.22 -28.56 16 12 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 13 C 0.01 0.60 5.46 84.65 0.46 1.07 16 14 N -0.92 -53.39 13.29 21.45 0.28 -53.11 16 15 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 C -0.07 -1.20 1.41 -12.65 -0.02 -1.22 16 20 C -0.11 -1.97 4.06 28.74 0.12 -1.85 16 21 C -0.12 -1.78 5.61 30.20 0.17 -1.61 16 22 C -0.12 -1.62 5.31 30.14 0.16 -1.46 16 23 C -0.11 -1.39 5.85 31.32 0.18 -1.21 16 24 C -0.12 -1.46 5.31 30.14 0.16 -1.30 16 25 C -0.11 -1.47 4.13 30.20 0.12 -1.35 16 26 H 0.07 1.23 7.03 -2.38 -0.02 1.22 16 27 H 0.05 1.23 6.40 -2.39 -0.02 1.22 16 28 H 0.04 0.89 7.49 -2.38 -0.02 0.87 16 29 H 0.35 7.42 8.08 -89.68 -0.72 6.70 16 30 H 0.06 1.63 8.05 -2.39 -0.02 1.61 16 31 H 0.06 1.99 7.47 -2.39 -0.02 1.97 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.07 1.10 7.38 -2.39 -0.02 1.09 16 36 H 0.06 1.10 5.59 -2.39 -0.01 1.09 16 37 H 0.05 1.19 7.16 -2.39 -0.02 1.18 16 38 H 0.07 0.98 6.98 -2.39 -0.02 0.96 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.83 6.63 -2.39 -0.02 0.81 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.77 6.63 -2.39 -0.02 0.76 16 46 H 0.07 0.95 6.50 -2.39 -0.02 0.93 16 47 H 0.07 0.89 7.90 -2.39 -0.02 0.87 16 Total: -1.00 -62.03 357.96 4.41 -57.62 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.21 Total: 12.72 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 4.06 Total: -20.32 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -1.89 Total: -95.65 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.03 4.41 -57.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473368770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.530 kcal (2) G-P(sol) polarization free energy of solvation -62.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds