Wall clock time and date at job start Tue Mar 31 2020 00:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50695 * 120.00148 * 2 1 4 4 C 1.50699 * 119.99514 * 180.02562 * 2 1 3 5 5 N 1.46897 * 109.47120 * 96.41144 * 4 2 1 6 6 C 1.46903 * 110.99954 * 287.98999 * 5 4 2 7 7 C 1.52998 * 109.47199 * 294.30928 * 6 5 4 8 8 C 1.38585 * 111.00094 * 164.03850 * 5 4 2 9 9 N 1.31224 * 126.47281 * 359.97438 * 8 5 4 10 10 N 1.28525 * 109.86240 * 179.97438 * 9 8 5 11 11 C 1.30302 * 110.05273 * 359.97438 * 10 9 8 12 12 C 1.50695 * 126.34661 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46896 * 90.02904 * 12 11 10 14 14 C 1.50702 * 109.47159 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99816 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99687 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00175 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46863 * 90.00293 * 18 16 14 20 20 H 1.48499 * 109.47129 * 210.00228 * 18 16 14 21 21 H 1.48497 * 109.46977 * 330.00053 * 18 16 14 22 22 N 1.36453 * 126.47578 * 180.28493 * 8 5 4 23 23 C 1.46498 * 127.13496 * 0.02562 * 22 8 5 24 24 H 1.08000 * 119.99639 * 5.14375 * 1 2 3 25 25 H 1.07997 * 120.00200 * 185.14658 * 1 2 3 26 26 H 1.08997 * 109.47016 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47015 * 300.00552 * 3 2 1 28 28 H 1.09004 * 109.47374 * 60.00462 * 3 2 1 29 29 H 1.09002 * 109.47522 * 336.40744 * 4 2 1 30 30 H 1.09001 * 109.46568 * 216.40650 * 4 2 1 31 31 H 1.09001 * 109.46621 * 54.31147 * 6 5 4 32 32 H 1.08998 * 109.46663 * 174.30626 * 6 5 4 33 33 H 1.08996 * 109.47005 * 304.70713 * 7 6 5 34 34 H 1.09000 * 109.47107 * 64.71040 * 7 6 5 35 35 H 1.09001 * 109.46940 * 184.71239 * 7 6 5 36 36 H 1.08999 * 109.47653 * 330.02974 * 12 11 10 37 37 H 1.09000 * 109.47537 * 210.02360 * 12 11 10 38 38 H 1.09000 * 109.47383 * 59.99851 * 13 12 11 39 39 H 1.09001 * 109.47075 * 299.99843 * 13 12 11 40 40 H 0.97002 * 119.99591 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47221 * 270.19551 * 23 22 8 42 42 H 1.08994 * 109.47561 * 30.19907 * 23 22 8 43 43 H 1.09002 * 109.46980 * 150.19632 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4422 -1.6513 -1.3770 6 6 1.2693 -2.0695 -2.1564 7 6 0.7157 -3.3758 -1.5837 8 6 3.4227 -2.6306 -1.3910 9 7 3.9700 -3.2014 -0.3439 10 7 4.8426 -4.0653 -0.7237 11 6 4.9028 -4.0972 -2.0249 12 6 5.8012 -4.9763 -2.8562 13 6 5.0856 -6.2940 -3.1603 14 6 5.9838 -7.1730 -3.9922 15 1 6.9664 -6.8262 -4.2759 16 6 5.5509 -8.4198 -4.3910 17 7 6.3349 -9.1870 -5.1165 18 14 3.8515 -9.0199 -3.8996 19 1 2.8664 -8.6200 -4.9364 20 1 3.8659 -10.4995 -3.7750 21 1 3.4712 -8.4171 -2.5968 22 7 4.0054 -3.1793 -2.4961 23 6 3.7247 -2.8554 -3.8970 24 1 -0.5399 0.9316 -0.0839 25 1 -0.5400 -0.9315 0.0839 26 1 3.1352 1.1058 0.0005 27 1 1.8002 1.8766 -0.8899 28 1 1.8004 1.8766 0.8900 29 1 1.4295 -2.0909 0.4104 30 1 2.9614 -1.2065 0.6094 31 1 0.5032 -1.2959 -2.1033 32 1 1.5596 -2.2226 -3.1958 33 1 1.5062 -4.1257 -1.5595 34 1 0.3484 -3.2022 -0.5722 35 1 -0.1020 -3.7300 -2.2114 36 1 6.7199 -5.1803 -2.3063 37 1 6.0419 -4.4695 -3.7907 38 1 4.1668 -6.0901 -3.7102 39 1 4.8449 -6.8008 -2.2258 40 1 6.0302 -10.0640 -5.3973 41 1 2.9262 -3.4991 -4.2659 42 1 3.4159 -1.8129 -3.9741 43 1 4.6234 -3.0130 -4.4935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519970755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:40 Heat of formation + Delta-G solvation = 80.630730 kcal Electronic energy + Delta-G solvation = -22205.670242 eV Core-core repulsion = 19094.248245 eV Total energy + Delta-G solvation = -3111.421996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.05406 -39.78103 -36.44330 -36.12139 -35.24690 -33.77537 -31.94689 -30.13282 -28.54617 -28.15792 -27.29286 -27.09582 -24.02714 -23.33542 -21.77036 -21.44534 -19.22890 -19.03114 -18.06782 -17.78579 -17.20623 -16.52532 -16.27178 -15.78979 -15.42303 -15.10253 -15.00804 -14.72315 -14.60336 -14.36152 -14.23069 -13.90062 -13.71988 -13.37472 -13.07560 -12.97955 -12.72692 -12.69093 -12.51620 -12.23718 -12.07488 -12.03778 -11.97081 -11.83249 -11.47782 -11.38791 -11.15193 -10.80167 -10.76351 -9.99465 -9.24825 -8.31573 -6.35409 0.74581 1.00810 1.29442 1.35185 1.45575 1.50822 1.78822 2.32432 2.73249 3.03686 3.45197 3.68320 3.72000 3.85558 3.88511 4.01526 4.04527 4.22464 4.27700 4.30818 4.43892 4.51876 4.56259 4.61342 4.69642 4.76294 4.77754 4.79149 4.84989 4.92141 5.01966 5.04429 5.12013 5.18250 5.26233 5.40813 5.43977 5.57397 5.61727 5.70080 5.94632 6.17257 6.23359 6.71780 7.29249 7.75505 8.84545 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.004099 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.824481 B = 6828.729338 C = 7189.508935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.127 4.127 3 C -0.111 4.111 4 C 0.100 3.900 5 N -0.437 5.437 6 C 0.042 3.958 7 C -0.185 4.185 8 C 0.361 3.639 9 N -0.362 5.362 10 N -0.329 5.329 11 C 0.192 3.808 12 C -0.009 4.009 13 C 0.007 3.993 14 C -0.527 4.527 15 H 0.048 0.952 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.940 3.060 19 H -0.259 1.259 20 H -0.283 1.283 21 H -0.265 1.265 22 N -0.479 5.479 23 C 0.064 3.936 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.020 0.980 39 H 0.006 0.994 40 H 0.268 0.732 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.030 21.806 4.383 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.128 4.128 3 C -0.168 4.168 4 C -0.026 4.026 5 N -0.160 5.160 6 C -0.085 4.085 7 C -0.243 4.243 8 C 0.004 3.996 9 N -0.207 5.207 10 N -0.167 5.167 11 C -0.078 4.078 12 C -0.048 4.048 13 C -0.032 4.032 14 C -0.565 4.565 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.584 5.584 18 Si 0.764 3.236 19 H -0.184 1.184 20 H -0.208 1.208 21 H -0.189 1.189 22 N -0.174 5.174 23 C -0.077 4.077 24 H 0.139 0.861 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.038 0.962 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.134 0.866 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.531 21.773 5.496 27.303 hybrid contribution -0.655 -1.288 -0.795 1.649 sum -16.186 20.484 4.701 26.527 Atomic orbital electron populations 1.23933 0.94567 1.03185 0.99322 1.21530 0.95396 0.94352 1.01473 1.20768 0.99402 0.93907 1.02707 1.21095 1.00190 0.95445 0.85845 1.58987 1.08752 1.31634 1.16621 1.22645 0.90833 0.97231 0.97742 1.22385 1.01548 0.97586 1.02816 1.22741 0.98467 0.94750 0.83629 1.74426 1.12047 1.09860 1.24360 1.73886 1.16817 1.16213 1.09832 1.25167 0.96130 0.94522 0.91958 1.19930 0.95197 0.92527 0.97189 1.19353 0.95718 0.92582 0.95516 1.21313 1.02278 1.00797 1.32093 0.93404 1.25805 1.01152 0.96812 0.94504 1.70029 1.38807 1.11067 1.38480 0.85819 0.80543 0.77600 0.79645 1.18368 1.20834 1.18916 1.46181 1.30881 1.31085 1.09221 1.22492 1.04876 1.04257 0.76035 0.86145 0.88101 0.93286 0.90557 0.90596 0.92634 0.90705 0.86073 0.88786 0.96245 0.91670 0.89292 0.89702 0.88560 0.96205 0.97528 0.92345 0.89180 0.86569 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 12.63 67.77 0.86 -1.13 16 2 C -0.13 -1.96 5.11 -16.50 -0.08 -2.05 16 3 C -0.11 -1.52 10.05 71.23 0.72 -0.80 16 4 C 0.10 2.19 4.53 85.56 0.39 2.57 16 5 N -0.44 -9.97 4.72 -710.35 -3.35 -13.32 16 6 C 0.04 0.71 5.72 86.30 0.49 1.20 16 7 C -0.18 -3.74 9.35 71.98 0.67 -3.07 16 8 C 0.36 11.21 5.62 260.11 1.46 12.67 16 9 N -0.36 -14.03 11.03 -58.00 -0.64 -14.67 16 10 N -0.33 -14.08 12.18 -49.54 -0.60 -14.68 16 11 C 0.19 7.27 7.32 137.64 1.01 8.27 16 12 C -0.01 -0.34 5.53 29.85 0.17 -0.18 16 13 C 0.01 0.33 4.02 29.85 0.12 0.45 16 14 C -0.53 -29.40 9.66 25.60 0.25 -29.15 16 15 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 16 C 0.02 0.87 5.47 84.65 0.46 1.33 16 17 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 18 Si 0.94 44.34 27.47 68.60 1.88 46.22 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 22 N -0.48 -14.54 3.21 -538.18 -1.73 -16.27 16 23 C 0.06 1.30 9.35 127.77 1.19 2.50 16 24 H 0.12 0.97 8.05 -2.91 -0.02 0.95 16 25 H 0.10 1.11 7.96 -2.91 -0.02 1.09 16 26 H 0.05 0.82 8.00 -2.39 -0.02 0.80 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 1.26 5.90 -2.39 -0.01 1.24 16 30 H 0.07 1.98 7.50 -2.39 -0.02 1.96 16 31 H 0.12 1.50 6.39 -2.39 -0.02 1.49 16 32 H 0.09 1.41 5.50 -2.39 -0.01 1.40 16 33 H 0.02 0.54 7.01 -2.39 -0.02 0.52 16 34 H 0.06 1.27 6.53 -2.39 -0.02 1.25 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.10 3.29 7.26 -2.39 -0.02 3.28 16 38 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 39 H 0.01 0.32 7.20 -2.39 -0.02 0.30 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.09 1.64 7.87 -2.39 -0.02 1.62 16 42 H 0.12 1.70 7.58 -2.39 -0.02 1.68 16 43 H 0.10 1.97 7.24 -2.39 -0.02 1.95 16 Total: -1.00 -72.69 344.12 4.49 -68.19 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.93 Total: 9.49 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 7.70 Total: -7.39 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -6.02 Total: -116.52 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -72.69 4.49 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519970755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.825 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds