Wall clock time and date at job start Tue Mar 31 2020 00:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46987 * 2 1 4 4 N 1.46501 * 109.46849 * 180.02562 * 3 2 1 5 5 C 1.36736 * 127.14203 * 91.31673 * 4 3 2 6 6 C 1.50708 * 126.34524 * 0.02562 * 5 4 3 7 7 N 1.30289 * 107.30709 * 179.97438 * 5 4 3 8 8 N 1.28524 * 110.05658 * 359.97438 * 7 5 4 9 9 C 1.31217 * 109.85809 * 359.74845 * 8 7 5 10 10 N 1.38579 * 126.47406 * 180.26142 * 9 8 7 11 11 C 1.46850 * 111.00289 * 63.29570 * 10 9 8 12 12 C 1.53032 * 109.52329 * 174.15932 * 11 10 9 13 13 C 1.53121 * 109.27824 * 59.18389 * 12 11 10 14 14 C 1.50697 * 109.52384 * 182.43740 * 13 12 11 15 15 H 1.08003 * 120.00102 * 119.68556 * 14 13 12 16 16 C 1.37875 * 120.00341 * 299.68161 * 14 13 12 17 17 N 1.31516 * 119.99702 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00255 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47140 * 60.00080 * 18 16 14 20 20 H 1.48499 * 109.47244 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47134 * 299.99701 * 18 16 14 22 22 C 1.53117 * 109.15974 * 302.34348 * 13 12 11 23 23 C 1.46846 * 110.99931 * 299.08811 * 10 9 8 24 24 H 1.09000 * 109.46797 * 59.99733 * 1 2 3 25 25 H 1.08995 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46998 * 300.00052 * 1 2 3 27 27 H 1.09003 * 109.46998 * 239.99947 * 2 1 3 28 28 H 1.09000 * 109.47193 * 119.99602 * 2 1 3 29 29 H 1.09000 * 109.46829 * 299.99825 * 3 2 1 30 30 H 1.08995 * 109.47155 * 59.99837 * 3 2 1 31 31 H 1.08998 * 109.47114 * 89.99922 * 6 5 4 32 32 H 1.08994 * 109.47074 * 209.99952 * 6 5 4 33 33 H 1.09002 * 109.46663 * 330.00072 * 6 5 4 34 34 H 1.08993 * 109.46448 * 294.17810 * 11 10 9 35 35 H 1.09004 * 109.46151 * 54.14985 * 11 10 9 36 36 H 1.08995 * 109.50745 * 299.23863 * 12 11 10 37 37 H 1.09003 * 109.50184 * 179.12341 * 12 11 10 38 38 H 1.09002 * 109.52081 * 62.24693 * 13 12 11 39 39 H 0.97003 * 120.00311 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.49931 * 297.71496 * 22 13 12 41 41 H 1.09004 * 109.50349 * 177.59589 * 22 13 12 42 42 H 1.08996 * 109.46057 * 305.85760 * 23 10 9 43 43 H 1.08998 * 109.46361 * 65.82454 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3302 1.4677 -1.0907 6 6 3.9012 1.5017 -2.5350 7 7 5.5560 1.4580 -0.6492 8 7 5.5615 1.4292 0.6357 9 6 4.3293 1.4243 1.0867 10 7 3.9387 1.4012 2.4162 11 6 4.3847 2.6122 3.1169 12 6 3.8139 2.6210 4.5367 13 6 4.2929 1.3721 5.2819 14 6 3.6859 1.3446 6.6609 15 1 3.0524 0.5211 6.9558 16 6 3.9393 2.3707 7.5463 17 7 4.7111 3.3733 7.1875 18 14 3.1874 2.3363 9.2559 19 1 3.6472 1.1208 9.9745 20 1 3.6101 3.5456 10.0070 21 1 1.7067 2.3155 9.1451 22 6 3.8572 0.1260 4.5061 23 6 4.4267 0.1895 3.0870 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.7982 2.5372 -2.8591 32 1 4.6507 1.0018 -3.1484 33 1 2.9444 0.9906 -2.6419 34 1 5.4736 2.6249 3.1631 35 1 4.0339 3.4930 2.5790 36 1 2.7249 2.6224 4.4912 37 1 4.1579 3.5123 5.0617 38 1 5.3799 1.3900 5.3616 39 1 4.8897 4.0951 7.8104 40 1 2.7688 0.0881 4.4601 41 1 4.2321 -0.7654 5.0091 42 1 4.1064 -0.6893 2.5275 43 1 5.5154 0.2135 3.1334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001547148634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:58 Heat of formation + Delta-G solvation = 66.573942 kcal Electronic energy + Delta-G solvation = -22523.178143 eV Core-core repulsion = 19411.146599 eV Total energy + Delta-G solvation = -3112.031544 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.80071 -38.29572 -36.23126 -34.12866 -32.73831 -32.01917 -30.71716 -29.93016 -27.27266 -26.72209 -25.56625 -22.72710 -22.36142 -22.09353 -20.90525 -20.43629 -18.55432 -17.15974 -16.42425 -16.13201 -15.89915 -15.32124 -14.55223 -14.21865 -14.13319 -13.79867 -13.42028 -13.06446 -12.97679 -12.79126 -12.57121 -12.44635 -12.42391 -12.31391 -11.75560 -11.58776 -11.29056 -11.08426 -11.01685 -10.88390 -10.60568 -10.34972 -10.29572 -10.14432 -9.94849 -9.54444 -9.08468 -8.82138 -8.69380 -8.31905 -8.27469 -5.98988 -4.04801 1.86447 2.38722 3.01535 3.31980 3.37147 3.39311 4.07526 4.36354 4.43799 4.45540 4.62331 4.83032 4.94263 5.09673 5.25649 5.28412 5.31174 5.36305 5.42917 5.53583 5.64419 5.70450 5.77282 5.80219 5.94914 5.99702 6.00398 6.15145 6.21775 6.24106 6.44001 6.52750 6.73949 6.78967 6.93619 7.06726 7.35815 7.39438 7.67600 7.75402 7.99068 8.09307 8.43950 8.93764 8.98484 9.59877 11.07382 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.004452 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.162911 B = 6288.074094 C = 6907.608922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.112 3.888 4 N -0.467 5.467 5 C 0.162 3.838 6 C -0.060 4.060 7 N -0.292 5.292 8 N -0.316 5.316 9 C 0.362 3.638 10 N -0.465 5.465 11 C 0.070 3.930 12 C -0.102 4.102 13 C 0.047 3.953 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.105 4.105 23 C 0.074 3.926 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.099 0.901 38 H 0.026 0.974 39 H 0.261 0.739 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.993 -3.896 -17.142 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C -0.011 4.011 4 N -0.161 5.161 5 C -0.105 4.105 6 C -0.120 4.120 7 N -0.133 5.133 8 N -0.159 5.159 9 C 0.006 3.994 10 N -0.192 5.192 11 C -0.057 4.057 12 C -0.141 4.141 13 C 0.028 3.972 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.143 4.143 23 C -0.053 4.053 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.930 -3.729 -17.039 18.768 hybrid contribution -1.043 0.101 0.958 1.420 sum -7.972 -3.628 -16.080 18.311 Atomic orbital electron populations 1.21674 0.94139 1.02436 1.02281 1.21853 0.96895 0.95459 1.03271 1.21923 0.75319 0.98979 1.04834 1.46445 1.08489 1.54973 1.06149 1.24745 0.87457 1.06424 0.91868 1.20137 1.02244 1.03634 0.85939 1.73978 1.17358 1.18355 1.03626 1.74670 1.17553 1.20618 1.03041 1.22739 0.85240 1.02096 0.89310 1.58962 1.59528 1.06103 0.94603 1.22390 0.98815 0.87709 0.96741 1.21734 0.98976 1.03879 0.89487 1.18707 0.96477 0.88994 0.93004 1.21126 1.29985 1.06441 0.97473 0.92715 1.24964 0.95069 0.95568 0.98322 1.69854 1.37235 1.10290 1.35608 0.86686 0.79573 0.77336 0.84548 1.20339 1.21365 1.20352 1.21725 1.00274 1.00776 0.91497 1.22184 0.98434 0.88572 0.96117 0.92586 0.92026 0.91851 0.91759 0.90612 0.89294 0.87820 0.89967 0.88912 0.90719 0.93746 0.92732 0.93658 0.88246 0.95602 0.92939 0.92350 0.92363 0.92540 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.71 16 2 C -0.14 -1.27 6.26 -26.73 -0.17 -1.44 16 3 C 0.11 1.17 5.90 -4.04 -0.02 1.14 16 4 N -0.47 -6.68 2.81 -114.08 -0.32 -7.00 16 5 C 0.16 2.28 8.07 -154.02 -1.24 1.04 16 6 C -0.06 -0.50 10.08 36.01 0.36 -0.14 16 7 N -0.29 -5.29 12.18 32.99 0.40 -4.88 16 8 N -0.32 -6.32 12.19 30.31 0.37 -5.95 16 9 C 0.36 6.51 6.41 -318.87 -2.05 4.47 16 10 N -0.46 -8.61 4.67 -174.55 -0.82 -9.42 16 11 C 0.07 1.42 5.39 -3.83 -0.02 1.39 16 12 C -0.10 -2.35 5.12 -26.65 -0.14 -2.49 16 13 C 0.05 1.13 2.16 -91.65 -0.20 0.94 16 14 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 17 N -0.89 -25.04 11.37 55.43 0.63 -24.41 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 C -0.10 -2.13 5.32 -26.65 -0.14 -2.27 16 23 C 0.07 1.38 5.37 -3.83 -0.02 1.36 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.67 7.80 -51.93 -0.41 0.27 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.46 7.88 -51.93 -0.41 0.05 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 2.55 6.18 -51.93 -0.32 2.23 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -30.87 346.04 -10.63 -41.51 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.44 Total: -1.88 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.66 Total: -9.11 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.27 Total: -51.67 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.87 -10.63 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001547148634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.080 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds