Wall clock time and date at job start Tue Mar 31 2020 00:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34945 * 126.03790 * 2 1 4 4 C 1.35319 * 107.74770 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.04107 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.64419 * 1.70152 * 5 4 3 7 7 C 1.54943 * 110.72298 * 238.54984 * 5 4 3 8 8 N 1.48537 * 103.22392 * 204.22664 * 7 5 4 9 9 C 1.46894 * 110.99857 * 159.72198 * 8 7 5 10 10 C 1.52997 * 109.47252 * 190.00049 * 9 8 7 11 11 C 1.53001 * 109.47157 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46962 * 179.97438 * 11 10 9 13 13 H 1.07990 * 120.00250 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99475 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99567 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00344 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47081 * 89.99796 * 16 14 12 18 18 H 1.48504 * 109.47092 * 209.99679 * 16 14 12 19 19 H 1.48496 * 109.47329 * 329.99781 * 16 14 12 20 20 C 1.47903 * 105.81921 * 39.21019 * 8 7 5 21 21 C 1.53995 * 107.05645 * 334.66626 * 20 8 7 22 22 H 1.08999 * 110.30776 * 120.14381 * 21 20 8 23 23 N 1.46904 * 110.30639 * 242.30739 * 21 20 8 24 24 C 1.39877 * 107.91756 * 0.02562 * 4 3 2 25 25 N 1.30833 * 108.20100 * 359.97438 * 24 4 3 26 26 H 1.09000 * 109.46904 * 269.99274 * 1 2 3 27 27 H 1.08996 * 109.47414 * 29.99752 * 1 2 3 28 28 H 1.09001 * 109.47268 * 149.99741 * 1 2 3 29 29 H 1.07994 * 126.12681 * 359.97438 * 3 2 1 30 30 H 1.08994 * 110.66792 * 322.66354 * 7 5 4 31 31 H 1.08998 * 110.66244 * 85.79804 * 7 5 4 32 32 H 1.09007 * 109.47439 * 310.00309 * 9 8 7 33 33 H 1.09008 * 109.47341 * 70.00068 * 9 8 7 34 34 H 1.09000 * 109.47239 * 299.99808 * 10 9 8 35 35 H 1.08999 * 109.46871 * 59.99979 * 10 9 8 36 36 H 1.08993 * 109.47313 * 299.99885 * 11 10 9 37 37 H 1.08999 * 109.47136 * 60.00277 * 11 10 9 38 38 H 0.96991 * 119.99848 * 179.97438 * 15 14 12 39 39 H 1.08993 * 109.91633 * 94.01847 * 20 8 7 40 40 H 1.09003 * 109.91262 * 215.31171 * 20 8 7 41 41 H 1.00897 * 110.99939 * 295.72037 * 23 21 20 42 42 H 1.00905 * 111.00038 * 59.67583 * 23 21 20 43 43 H 1.07995 * 125.89269 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5452 0.0002 6 1 4.4857 2.5977 0.0297 7 6 5.6546 1.2498 -1.2356 8 7 7.0040 1.6912 -0.7991 9 6 8.0521 1.0699 -1.6197 10 6 9.4205 1.3446 -0.9929 11 6 10.5120 0.6969 -1.8473 12 6 11.8599 0.9680 -1.2301 13 1 11.9309 1.5441 -0.3195 14 6 13.0025 0.4795 -1.8277 15 7 14.1788 0.7165 -1.2894 16 14 12.8797 -0.5177 -3.4025 17 1 12.9560 0.3936 -4.5726 18 1 13.9990 -1.4919 -3.4600 19 1 11.5866 -1.2473 -3.4268 20 6 7.1248 1.2790 0.6161 21 6 5.6963 1.1904 1.1844 22 1 5.4911 0.1794 1.5362 23 7 5.5214 2.1569 2.2768 24 6 3.5346 -0.7322 0.0003 25 7 2.2891 -1.1328 0.0002 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 1.9281 2.1192 -0.0004 30 1 5.6535 0.1840 -1.4639 31 1 5.3201 1.8291 -2.0963 32 1 7.8846 -0.0060 -1.6696 33 1 8.0224 1.4892 -2.6255 34 1 9.5880 2.4205 -0.9431 35 1 9.4501 0.9253 0.0128 36 1 10.3444 -0.3789 -1.8966 37 1 10.4825 1.1158 -2.8531 38 1 14.9825 0.3725 -1.7096 39 1 7.6105 0.3052 0.6790 40 1 7.7000 2.0203 1.1709 41 1 6.1230 1.9349 3.0558 42 1 5.6803 3.0998 1.9544 43 1 4.4054 -1.3710 0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579968113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:42 Heat of formation + Delta-G solvation = 77.830155 kcal Electronic energy + Delta-G solvation = -21357.765087 eV Core-core repulsion = 18246.221649 eV Total energy + Delta-G solvation = -3111.543438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45412 -39.16791 -35.19866 -33.53662 -33.23069 -31.94027 -31.09179 -28.93571 -27.50718 -26.88216 -25.56625 -22.86991 -21.92909 -21.05514 -20.81877 -20.12442 -19.23426 -17.24036 -16.62601 -15.95573 -15.69803 -15.61764 -15.16135 -14.57931 -14.40480 -14.16022 -13.97046 -13.35251 -13.13857 -13.07096 -12.83968 -12.74784 -12.59202 -12.30483 -11.75767 -11.74489 -11.50972 -11.32652 -11.06626 -10.86335 -10.72986 -10.54499 -9.90114 -9.73570 -9.59481 -9.56774 -9.16105 -8.81330 -8.52202 -8.42155 -8.20155 -6.02830 -4.00535 1.71402 2.32337 2.62591 3.31804 3.38978 3.42826 4.09149 4.30721 4.44001 4.46614 4.64942 4.75773 4.79344 4.85319 4.93633 5.05161 5.18549 5.30651 5.31196 5.37407 5.41199 5.53710 5.64489 5.69987 5.78117 5.87321 5.96735 6.03162 6.16752 6.25300 6.47448 6.51941 6.59917 6.80383 6.87511 7.07686 7.09100 7.25613 7.34144 7.39689 7.46896 7.51769 7.81712 8.56182 9.02362 9.59886 11.10751 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.031498 B = 0.003076 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.722301 B = 9099.145501 C = 9614.222988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.060 3.940 4 C -0.213 4.213 5 C -0.003 4.003 6 H 0.089 0.911 7 C 0.041 3.959 8 N -0.515 5.515 9 C 0.044 3.956 10 C -0.100 4.100 11 C -0.013 4.013 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.002 3.998 21 C 0.089 3.911 22 H 0.085 0.915 23 N -0.838 5.838 24 C 0.054 3.946 25 N -0.299 5.299 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.172 0.828 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.341 0.659 42 H 0.343 0.657 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.565 1.265 3.236 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.163 5.163 3 C -0.086 4.086 4 C -0.225 4.225 5 C -0.023 4.023 6 H 0.107 0.893 7 C -0.088 4.088 8 N -0.239 5.239 9 C -0.084 4.084 10 C -0.138 4.138 11 C -0.051 4.051 12 C -0.556 4.556 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.128 4.128 21 C -0.023 4.023 22 H 0.103 0.897 23 N -0.367 5.367 24 C -0.132 4.132 25 N -0.120 5.120 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.189 0.811 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -29.032 0.523 3.186 29.211 hybrid contribution 1.664 -0.507 -0.945 1.979 sum -27.368 0.016 2.241 27.460 Atomic orbital electron populations 1.21814 0.74433 1.04321 1.03246 1.48409 1.06497 1.03915 1.57507 1.22280 0.90770 0.93228 1.02311 1.19839 0.93887 0.93541 1.15240 1.20302 0.90295 0.98245 0.93494 0.89271 1.23314 0.89033 0.98961 0.97448 1.64819 1.01876 1.55225 1.01936 1.22496 0.92246 0.96159 0.97464 1.21527 0.91775 1.01314 0.99212 1.19547 0.94615 0.95544 0.95389 1.21138 0.89146 1.34192 1.11159 0.91107 1.25048 0.95322 0.95887 0.97358 1.69919 0.97782 1.46394 1.40289 0.86762 0.77837 0.80494 0.84092 1.20281 1.21435 1.19071 1.23821 0.97597 1.00340 0.91084 1.22422 0.92234 0.96709 0.90981 0.89708 1.58912 1.62118 1.05964 1.09694 1.23721 0.95035 0.94735 0.99720 1.77346 1.01694 1.08293 1.24712 0.90888 0.89581 0.89459 0.81089 0.93611 0.90156 0.95143 0.90988 0.92105 0.92907 0.96878 0.97034 0.92780 0.93121 0.90401 0.84664 0.84437 0.80465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.47 59.85 0.69 1.23 16 2 N -0.38 -3.70 4.01 -68.17 -0.27 -3.97 16 3 C 0.06 0.55 11.40 -17.22 -0.20 0.35 16 4 C -0.21 -2.24 4.95 -105.05 -0.52 -2.76 16 5 C 0.00 -0.03 3.16 -89.91 -0.28 -0.31 16 6 H 0.09 0.91 7.95 -51.93 -0.41 0.50 16 7 C 0.04 0.49 5.98 -1.89 -0.01 0.47 16 8 N -0.51 -7.27 5.40 -230.45 -1.24 -8.51 16 9 C 0.04 0.73 4.99 -3.83 -0.02 0.71 16 10 C -0.10 -2.01 4.90 -26.73 -0.13 -2.14 16 11 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 12 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.06 1.91 5.47 -17.81 -0.10 1.82 16 15 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 16 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 20 C 0.00 0.02 5.10 -2.75 -0.01 0.01 16 21 C 0.09 0.97 3.67 -66.36 -0.24 0.73 16 22 H 0.08 0.96 7.31 -51.93 -0.38 0.58 16 23 N -0.84 -8.16 9.17 -3.52 -0.03 -8.19 16 24 C 0.05 0.62 10.75 -17.36 -0.19 0.43 16 25 N -0.30 -3.68 12.57 30.62 0.39 -3.30 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.05 0.56 7.35 -51.93 -0.38 0.18 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.50 7.89 -51.92 -0.41 0.09 16 33 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 1.06 6.63 -51.93 -0.34 0.71 16 36 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.05 0.72 7.14 -51.93 -0.37 0.35 16 40 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 41 H 0.34 3.01 9.08 -39.29 -0.36 2.65 16 42 H 0.34 3.15 8.89 -39.29 -0.35 2.80 16 43 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -33.57 345.07 -8.47 -42.05 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.15 Total: 2.08 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.46 Total: -15.23 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.39 Total: -51.45 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.57 -8.47 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579968113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.875 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds