Wall clock time and date at job start Tue Mar 31 2020 00:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40078 * 126.03510 * 2 1 4 4 C 1.30840 * 108.20162 * 180.02562 * 3 2 1 5 5 C 1.39866 * 108.20325 * 359.78070 * 4 3 2 6 6 C 1.50702 * 126.03979 * 180.23492 * 5 4 3 7 7 N 1.46898 * 109.47152 * 260.10393 * 6 5 4 8 8 C 1.34945 * 126.03697 * 180.02562 * 2 1 3 9 9 C 1.50708 * 126.12396 * 359.94190 * 8 2 1 10 10 N 1.46902 * 109.47013 * 75.31230 * 9 8 2 11 11 C 1.46900 * 110.99634 * 192.37695 * 10 9 8 12 12 C 1.50704 * 109.46887 * 162.49676 * 11 10 9 13 13 H 1.07999 * 119.99913 * 354.60219 * 12 11 10 14 14 C 1.37873 * 119.99979 * 174.60445 * 12 11 10 15 15 N 1.31510 * 119.99982 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99989 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46695 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46870 * 119.99587 * 16 14 12 19 19 H 1.48491 * 109.47047 * 239.99839 * 16 14 12 20 20 C 1.46905 * 110.99784 * 68.42913 * 10 9 8 21 21 C 1.53003 * 109.46755 * 197.63667 * 20 10 9 22 22 C 1.52999 * 117.49585 * 247.29008 * 21 20 10 23 23 C 1.52997 * 117.50012 * 178.62959 * 21 20 10 24 24 H 1.09005 * 109.46905 * 269.97559 * 1 2 3 25 25 H 1.08995 * 109.47363 * 29.96840 * 1 2 3 26 26 H 1.08995 * 109.47535 * 149.97718 * 1 2 3 27 27 H 1.08008 * 125.89697 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47611 * 20.10292 * 6 5 4 29 29 H 1.08997 * 109.47309 * 140.10731 * 6 5 4 30 30 H 1.00901 * 111.00132 * 56.04408 * 7 6 5 31 31 H 1.00896 * 111.00433 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.46808 * 195.30729 * 9 8 2 33 33 H 1.08994 * 109.47309 * 315.30791 * 9 8 2 34 34 H 1.08994 * 109.47710 * 282.49891 * 11 10 9 35 35 H 1.09000 * 109.47210 * 42.50238 * 11 10 9 36 36 H 0.97002 * 119.99680 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.47209 * 317.63419 * 20 10 9 38 38 H 1.08992 * 109.47394 * 77.63732 * 20 10 9 39 39 H 1.09002 * 115.54912 * 32.95731 * 21 20 10 40 40 H 1.08999 * 117.49928 * 0.02562 * 22 21 20 41 41 H 1.09007 * 117.49714 * 145.02084 * 22 21 20 42 42 H 1.08990 * 117.50153 * 214.97624 * 23 21 20 43 43 H 1.09004 * 117.49525 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5436 -0.6666 0.0042 6 6 4.7679 -1.5453 0.0102 7 7 5.0304 -2.0288 -1.3518 8 6 2.2589 -1.0912 -0.0005 9 6 1.7972 -2.5258 0.0001 10 7 1.3118 -2.8846 -1.3392 11 6 0.5885 -4.1629 -1.3120 12 6 -0.2475 -4.2935 -2.5591 13 1 -0.3107 -3.4705 -3.2555 14 6 -0.9317 -5.4638 -2.8108 15 7 -0.8543 -6.4661 -1.9630 16 14 -1.9674 -5.6260 -4.3570 17 1 -1.8882 -4.3668 -5.1401 18 1 -1.4575 -6.7532 -5.1783 19 1 -3.3802 -5.8867 -3.9813 20 6 2.4170 -2.9255 -2.3062 21 6 1.8538 -2.8617 -3.7273 22 6 2.0092 -4.1051 -4.6052 23 6 2.8547 -2.8600 -4.8845 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8897 -0.5141 27 1 4.4054 1.3710 -0.0003 28 1 5.6249 -0.9721 0.3637 29 1 4.6017 -2.3955 0.6717 30 1 5.1241 -1.2588 -1.9971 31 1 5.8469 -2.6211 -1.3743 32 1 2.6297 -3.1753 0.2708 33 1 0.9911 -2.6478 0.7235 34 1 1.3036 -4.9842 -1.2663 35 1 -0.0588 -4.1955 -0.4356 36 1 -1.3354 -7.2895 -2.1404 37 1 3.0780 -2.0751 -2.1388 38 1 2.9772 -3.8517 -2.1786 39 1 0.9452 -2.2715 -3.8468 40 1 2.5122 -4.9687 -4.1702 41 1 1.2029 -4.3327 -5.3027 42 1 2.6044 -2.2691 -5.7654 43 1 3.9144 -2.9048 -4.6333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580002234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:54 Heat of formation + Delta-G solvation = 116.527936 kcal Electronic energy + Delta-G solvation = -22967.915203 eV Core-core repulsion = 19858.049827 eV Total energy + Delta-G solvation = -3109.865376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06863 -37.51575 -35.18087 -34.82809 -32.79390 -32.25345 -30.31617 -27.37875 -26.86644 -26.42803 -24.10137 -23.39255 -21.51425 -21.02353 -20.50394 -19.34050 -18.93772 -16.57845 -16.04988 -15.67763 -15.28383 -14.76616 -14.61329 -14.31706 -14.05679 -13.92847 -13.75484 -13.30579 -12.90342 -12.69712 -12.50719 -12.20397 -11.94933 -11.81005 -11.55769 -11.26281 -11.04633 -10.78024 -10.65243 -10.48219 -10.36345 -10.26119 -9.83441 -9.43269 -9.08208 -8.95076 -8.84686 -8.41893 -8.30471 -8.00652 -7.25324 -5.95596 -3.92556 2.18675 2.85609 2.97879 3.32356 3.40940 3.44478 4.46788 4.69781 4.80773 4.89252 4.98945 5.13779 5.36868 5.40644 5.43858 5.48736 5.53133 5.67051 5.76734 5.82447 5.87918 5.90899 6.04448 6.12447 6.18879 6.27732 6.42667 6.50962 6.71065 6.78461 6.88213 6.89558 6.95415 7.22514 7.26501 7.33357 7.34648 7.45396 7.59757 7.91462 8.01096 8.16166 8.27213 8.60014 9.13939 9.69406 11.15753 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.005969 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.435810 B = 4689.737046 C = 5250.469048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.356 5.356 3 N -0.310 5.310 4 C 0.047 3.953 5 C -0.259 4.259 6 C 0.147 3.853 7 N -0.840 5.840 8 C 0.141 3.859 9 C 0.113 3.887 10 N -0.533 5.533 11 C 0.193 3.807 12 C -0.484 4.484 13 H 0.070 0.930 14 C 0.055 3.945 15 N -0.903 5.903 16 Si 0.886 3.114 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.287 1.287 20 C 0.098 3.902 21 C -0.102 4.102 22 C -0.154 4.154 23 C -0.208 4.208 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.173 0.827 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.340 0.660 31 H 0.336 0.664 32 H 0.053 0.947 33 H 0.076 0.924 34 H -0.003 1.003 35 H 0.019 0.981 36 H 0.257 0.743 37 H 0.094 0.906 38 H 0.025 0.975 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.710 9.865 2.983 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.137 5.137 3 N -0.131 5.131 4 C -0.139 4.139 5 C -0.272 4.272 6 C 0.016 3.984 7 N -0.370 5.370 8 C 0.011 3.989 9 C -0.017 4.017 10 N -0.258 5.258 11 C 0.069 3.931 12 C -0.523 4.523 13 H 0.088 0.912 14 C -0.145 4.145 15 N -0.544 5.544 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.214 1.214 20 C -0.030 4.030 21 C -0.120 4.120 22 C -0.191 4.191 23 C -0.245 4.245 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.190 0.810 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.015 0.985 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.044 0.956 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.633 10.711 2.935 13.476 hybrid contribution 1.225 -1.096 -0.548 1.733 sum 8.859 9.616 2.387 13.290 Atomic orbital electron populations 1.21943 0.74034 1.05530 1.02740 1.48322 1.06624 1.03108 1.55618 1.77267 1.01545 1.08713 1.25624 1.23562 0.95167 0.94312 1.00836 1.19611 0.93943 0.93342 1.20286 1.19848 0.92401 0.95813 0.90377 1.58826 1.45480 1.25066 1.07603 1.20976 0.90143 0.90661 0.97149 1.20609 0.99221 0.87512 0.94383 1.62116 1.24718 1.36286 1.02724 1.19796 0.92539 0.83064 0.97740 1.21264 1.26013 0.99216 1.05833 0.91213 1.24903 0.97154 0.95957 0.96495 1.69962 1.43607 1.04624 1.36215 0.86624 0.80152 0.77988 0.83771 1.19747 1.21234 1.21365 1.21752 0.91097 1.00963 0.89161 1.22067 0.98317 1.00646 0.91019 1.22708 1.01112 0.91948 1.03313 1.23050 0.97072 1.03666 1.00755 0.91505 0.89957 0.87438 0.81005 0.95455 0.91086 0.84735 0.85138 0.92919 0.90606 0.98467 0.96251 0.93281 0.88803 0.95642 0.88283 0.89685 0.90217 0.90443 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.36 11.27 59.85 0.67 2.03 16 2 N -0.36 -5.72 4.01 -63.88 -0.26 -5.97 16 3 N -0.31 -5.01 12.58 30.63 0.39 -4.62 16 4 C 0.05 0.65 11.96 -17.36 -0.21 0.45 16 5 C -0.26 -3.69 5.07 -105.06 -0.53 -4.22 16 6 C 0.15 1.71 6.83 -4.98 -0.03 1.68 16 7 N -0.84 -9.47 6.88 -11.41 -0.08 -9.55 16 8 C 0.14 2.27 5.55 -82.26 -0.46 1.82 16 9 C 0.11 1.95 4.77 -4.97 -0.02 1.93 16 10 N -0.53 -10.73 4.38 -237.51 -1.04 -11.77 16 11 C 0.19 4.73 4.75 -4.97 -0.02 4.71 16 12 C -0.48 -12.71 7.00 -34.44 -0.24 -12.95 16 13 H 0.07 1.83 5.42 -52.49 -0.28 1.55 16 14 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 15 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 16 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.10 1.87 4.66 -3.82 -0.02 1.85 16 21 C -0.10 -2.00 3.85 -90.62 -0.35 -2.35 16 22 C -0.15 -3.03 9.07 -26.69 -0.24 -3.27 16 23 C -0.21 -3.49 10.25 -26.69 -0.27 -3.76 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.11 1.63 7.72 -51.93 -0.40 1.23 16 27 H 0.17 1.81 8.06 -52.48 -0.42 1.38 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.87 7.43 -51.93 -0.39 0.48 16 30 H 0.34 3.68 8.94 -39.29 -0.35 3.33 16 31 H 0.34 3.13 9.08 -39.29 -0.36 2.77 16 32 H 0.05 0.91 7.01 -51.93 -0.36 0.54 16 33 H 0.08 1.29 7.79 -51.93 -0.40 0.89 16 34 H 0.00 -0.07 7.81 -51.93 -0.41 -0.47 16 35 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 1.66 4.04 -51.93 -0.21 1.45 16 38 H 0.03 0.53 7.56 -51.93 -0.39 0.14 16 39 H 0.10 2.13 6.94 -51.93 -0.36 1.77 16 40 H 0.08 1.75 8.04 -51.93 -0.42 1.33 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -29.92 343.22 -8.76 -38.68 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.83 Total: 7.85 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.82 Total: -10.68 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.25 Total: -57.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.92 -8.76 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580002234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.205 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds