Wall clock time and date at job start Tue Mar 31 2020 00:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40086 * 126.03919 * 2 1 4 4 C 1.30837 * 108.20433 * 179.74425 * 3 2 1 5 5 C 1.39862 * 108.20335 * 0.44050 * 4 3 2 6 6 C 1.50701 * 126.04043 * 179.81919 * 5 4 3 7 7 N 1.46901 * 109.46921 * 259.68951 * 6 5 4 8 8 C 1.34953 * 126.03627 * 180.02562 * 2 1 3 9 9 C 1.50701 * 126.12627 * 359.97438 * 8 2 1 10 10 N 1.46892 * 109.47295 * 89.97825 * 9 8 2 11 11 C 1.46850 * 110.99811 * 294.20749 * 10 9 8 12 12 C 1.53045 * 109.52125 * 174.15972 * 11 10 9 13 13 C 1.53123 * 109.27662 * 59.18082 * 12 11 10 14 14 C 1.53118 * 109.15965 * 302.34233 * 13 12 11 15 15 H 1.08993 * 109.53710 * 297.69364 * 14 13 12 16 16 C 1.50697 * 109.49803 * 177.59460 * 14 13 12 17 17 H 1.08002 * 120.00144 * 240.19066 * 16 14 13 18 18 C 1.37876 * 120.00086 * 60.20130 * 16 14 13 19 19 N 1.31517 * 120.00022 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00012 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46797 * 90.00298 * 20 18 16 22 22 H 1.48503 * 109.47042 * 209.99861 * 20 18 16 23 23 H 1.48493 * 109.47487 * 330.00263 * 20 18 16 24 24 C 1.46842 * 111.00312 * 169.99896 * 10 9 8 25 25 H 1.09000 * 109.46613 * 269.96982 * 1 2 3 26 26 H 1.09002 * 109.47229 * 29.96957 * 1 2 3 27 27 H 1.08998 * 109.47233 * 149.97078 * 1 2 3 28 28 H 1.08002 * 125.89501 * 180.26034 * 4 3 2 29 29 H 1.09002 * 109.47060 * 19.69132 * 6 5 4 30 30 H 1.09001 * 109.47380 * 139.69220 * 6 5 4 31 31 H 1.00898 * 110.99877 * 56.04636 * 7 6 5 32 32 H 1.00908 * 110.99847 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.46416 * 209.97996 * 9 8 2 34 34 H 1.09006 * 109.46909 * 329.97296 * 9 8 2 35 35 H 1.08997 * 109.46486 * 294.17386 * 11 10 9 36 36 H 1.08998 * 109.46348 * 54.15080 * 11 10 9 37 37 H 1.09002 * 109.50589 * 299.23767 * 12 11 10 38 38 H 1.08999 * 109.50109 * 179.12296 * 12 11 10 39 39 H 1.08997 * 109.52109 * 182.43821 * 13 12 11 40 40 H 1.09003 * 109.51912 * 62.24744 * 13 12 11 41 41 H 0.96992 * 119.99785 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.45822 * 305.85740 * 24 10 9 43 43 H 1.09000 * 109.46155 * 65.82221 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7320 0.0055 5 6 3.5437 -0.6665 -0.0010 6 6 4.7680 -1.5453 -0.0016 7 7 5.0251 -2.0258 -1.3658 8 6 2.2590 -1.0913 -0.0005 9 6 1.7973 -2.5259 -0.0006 10 7 1.6463 -2.9916 -1.3855 11 6 0.5641 -2.2708 -2.0680 12 6 0.5311 -2.6757 -3.5436 13 6 0.3083 -4.1871 -3.6482 14 6 1.4221 -4.9129 -2.8884 15 1 2.3841 -4.6872 -3.3484 16 6 1.1777 -6.3992 -2.9365 17 1 1.0413 -6.9540 -2.0199 18 6 1.1285 -7.0509 -4.1505 19 7 1.2943 -6.3753 -5.2667 20 14 0.8263 -8.8933 -4.2100 21 1 -0.6335 -9.1530 -4.2926 22 1 1.4993 -9.4670 -5.4030 23 1 1.3727 -9.5245 -2.9820 24 6 1.4293 -4.4431 -1.4320 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5143 28 1 4.4054 1.3710 0.0110 29 1 5.6264 -0.9728 0.3497 30 1 4.6044 -2.3969 0.6587 31 1 5.1162 -1.2544 -2.0097 32 1 5.8420 -2.6175 -1.3929 33 1 2.5337 -3.1444 0.5126 34 1 0.8392 -2.5992 0.5140 35 1 -0.3889 -2.5201 -1.6016 36 1 0.7369 -1.1975 -1.9899 37 1 1.4789 -2.4142 -4.0141 38 1 -0.2821 -2.1523 -4.0464 39 1 0.3273 -4.4864 -4.6960 40 1 -0.6572 -4.4439 -3.2123 41 1 1.2601 -6.8338 -6.1207 42 1 2.2304 -4.9475 -0.8916 43 1 0.4722 -4.6822 -0.9685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580002299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:50 Heat of formation + Delta-G solvation = 82.177298 kcal Electronic energy + Delta-G solvation = -22748.167947 eV Core-core repulsion = 19636.813015 eV Total energy + Delta-G solvation = -3111.354932 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26891 -38.08573 -34.82813 -34.10884 -32.64226 -31.89660 -30.03191 -29.61117 -27.16840 -25.72141 -24.93610 -23.75117 -22.03394 -21.42504 -20.64981 -18.94868 -18.59095 -16.56726 -16.31090 -15.84570 -15.47945 -14.80681 -14.40234 -14.30964 -14.18533 -14.02548 -13.44264 -13.32765 -12.95348 -12.75821 -12.53097 -12.39201 -12.26078 -12.03265 -11.72147 -11.59638 -11.21919 -10.92234 -10.65635 -10.60278 -10.38675 -10.08199 -9.79276 -9.42704 -9.24397 -8.97774 -8.65501 -8.31191 -8.25820 -8.13409 -7.57604 -5.93001 -3.98887 1.98340 2.60485 2.88973 3.32975 3.40050 3.42878 4.43377 4.57614 4.63513 4.82246 5.04099 5.10125 5.12867 5.29710 5.37034 5.37603 5.46348 5.52402 5.63324 5.73218 5.76820 5.89158 6.00813 6.07208 6.26485 6.38471 6.44926 6.54728 6.73691 6.75551 6.78260 7.01244 7.12274 7.27205 7.43283 7.49076 7.68984 7.78645 7.79661 7.82658 7.86078 8.15875 8.23655 8.52997 9.05517 9.65053 11.12968 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.004696 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.753669 B = 5961.608486 C = 6443.132059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.373 5.373 3 N -0.305 5.305 4 C 0.048 3.952 5 C -0.230 4.230 6 C 0.150 3.850 7 N -0.829 5.829 8 C 0.128 3.872 9 C 0.120 3.880 10 N -0.510 5.510 11 C 0.058 3.942 12 C -0.114 4.114 13 C -0.110 4.110 14 C 0.058 3.942 15 H 0.039 0.961 16 C -0.513 4.513 17 H 0.052 0.948 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.072 3.928 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.176 0.824 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.337 0.663 32 H 0.336 0.664 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.019 0.981 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.027 0.973 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 11.535 10.186 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.155 5.155 3 N -0.126 5.126 4 C -0.138 4.138 5 C -0.242 4.242 6 C 0.019 3.981 7 N -0.358 5.358 8 C -0.001 4.001 9 C -0.010 4.010 10 N -0.234 5.234 11 C -0.070 4.070 12 C -0.152 4.152 13 C -0.148 4.148 14 C 0.039 3.961 15 H 0.057 0.943 16 C -0.552 4.552 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.054 4.054 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.193 0.807 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.048 0.952 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.080 12.259 9.809 15.738 hybrid contribution 0.367 -1.202 0.414 1.323 sum 1.447 11.057 10.223 15.128 Atomic orbital electron populations 1.22050 0.74913 1.05040 1.03118 1.48368 1.06215 1.03559 1.57391 1.77278 1.01618 1.08192 1.25512 1.23667 0.95134 0.94543 1.00464 1.19638 0.94131 0.93112 1.17311 1.19823 0.91773 0.95488 0.91064 1.58558 1.45937 1.24732 1.06577 1.20821 0.90674 0.89968 0.98633 1.20595 0.99475 0.88536 0.92403 1.61936 1.44015 1.06246 1.11241 1.22251 0.91144 0.96979 0.96634 1.21645 1.00602 0.99512 0.93471 1.21655 0.98236 0.90378 1.04505 1.18631 0.95750 0.93574 0.88130 0.94326 1.21148 1.48959 0.92802 0.92286 0.92943 1.24918 0.95271 0.97796 0.95783 1.69895 1.50175 1.35238 0.97361 0.86659 0.78134 0.86037 0.77509 1.20891 1.21294 1.19991 1.22304 0.97748 0.83782 1.01579 0.91137 0.89381 0.88839 0.80679 0.95988 0.91204 0.85088 0.85187 0.88634 0.95162 0.96320 0.92590 0.91893 0.93872 0.89171 0.95378 0.93130 0.92004 0.96670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 10.26 59.85 0.61 1.62 16 2 N -0.37 -5.33 3.62 -63.88 -0.23 -5.57 16 3 N -0.31 -4.58 12.58 30.62 0.39 -4.19 16 4 C 0.05 0.64 11.96 -17.37 -0.21 0.43 16 5 C -0.23 -3.20 5.61 -105.05 -0.59 -3.79 16 6 C 0.15 1.83 6.94 -4.97 -0.03 1.79 16 7 N -0.83 -10.91 9.61 -11.41 -0.11 -11.02 16 8 C 0.13 1.89 5.58 -82.26 -0.46 1.43 16 9 C 0.12 1.81 4.89 -4.98 -0.02 1.79 16 10 N -0.51 -9.19 4.65 -236.12 -1.10 -10.29 16 11 C 0.06 1.01 3.92 -3.83 -0.01 1.00 16 12 C -0.11 -2.27 6.09 -26.64 -0.16 -2.44 16 13 C -0.11 -2.58 5.03 -26.61 -0.13 -2.72 16 14 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 15 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 17 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.29 11.36 55.43 0.63 -24.66 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.07 1.50 4.68 -3.84 -0.02 1.48 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.06 4.59 -51.93 -0.24 0.82 16 28 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 31 H 0.34 4.30 8.98 -39.29 -0.35 3.95 16 32 H 0.34 3.83 9.08 -39.29 -0.36 3.48 16 33 H 0.10 1.40 7.22 -51.93 -0.38 1.03 16 34 H 0.03 0.43 7.71 -51.93 -0.40 0.03 16 35 H 0.02 0.32 7.43 -51.93 -0.39 -0.07 16 36 H 0.06 0.94 5.27 -51.93 -0.27 0.66 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 1.27 8.02 -51.93 -0.42 0.86 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -30.28 334.96 -8.88 -39.15 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.85 Total: 6.13 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.63 Total: -10.73 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.42 Total: -55.72 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.28 -8.88 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580002299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.332 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds