Wall clock time and date at job start Tue Mar 31 2020 00:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40086 * 126.03919 * 2 1 4 4 C 1.30837 * 108.20433 * 179.74425 * 3 2 1 5 5 C 1.39862 * 108.20335 * 0.44050 * 4 3 2 6 6 C 1.50701 * 126.04043 * 179.81919 * 5 4 3 7 7 N 1.46901 * 109.46921 * 259.68951 * 6 5 4 8 8 C 1.34953 * 126.03627 * 180.02562 * 2 1 3 9 9 C 1.50701 * 126.12627 * 359.97438 * 8 2 1 10 10 N 1.46892 * 109.47295 * 89.97825 * 9 8 2 11 11 C 1.46850 * 110.99811 * 294.20749 * 10 9 8 12 12 C 1.53045 * 109.52125 * 174.15972 * 11 10 9 13 13 C 1.53123 * 109.27662 * 59.18082 * 12 11 10 14 14 C 1.53118 * 109.15965 * 302.34233 * 13 12 11 15 15 H 1.08993 * 109.53710 * 297.69364 * 14 13 12 16 16 C 1.50697 * 109.49803 * 177.59460 * 14 13 12 17 17 H 1.08002 * 120.00144 * 240.19066 * 16 14 13 18 18 C 1.37876 * 120.00086 * 60.20130 * 16 14 13 19 19 N 1.31517 * 120.00022 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00012 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46797 * 90.00298 * 20 18 16 22 22 H 1.48503 * 109.47042 * 209.99861 * 20 18 16 23 23 H 1.48493 * 109.47487 * 330.00263 * 20 18 16 24 24 C 1.46842 * 111.00312 * 169.99896 * 10 9 8 25 25 H 1.09000 * 109.46613 * 269.96982 * 1 2 3 26 26 H 1.09002 * 109.47229 * 29.96957 * 1 2 3 27 27 H 1.08998 * 109.47233 * 149.97078 * 1 2 3 28 28 H 1.08002 * 125.89501 * 180.26034 * 4 3 2 29 29 H 1.09002 * 109.47060 * 19.69132 * 6 5 4 30 30 H 1.09001 * 109.47380 * 139.69220 * 6 5 4 31 31 H 1.00898 * 110.99877 * 56.04636 * 7 6 5 32 32 H 1.00908 * 110.99847 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.46416 * 209.97996 * 9 8 2 34 34 H 1.09006 * 109.46909 * 329.97296 * 9 8 2 35 35 H 1.08997 * 109.46486 * 294.17386 * 11 10 9 36 36 H 1.08998 * 109.46348 * 54.15080 * 11 10 9 37 37 H 1.09002 * 109.50589 * 299.23767 * 12 11 10 38 38 H 1.08999 * 109.50109 * 179.12296 * 12 11 10 39 39 H 1.08997 * 109.52109 * 182.43821 * 13 12 11 40 40 H 1.09003 * 109.51912 * 62.24744 * 13 12 11 41 41 H 0.96992 * 119.99785 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.45822 * 305.85740 * 24 10 9 43 43 H 1.09000 * 109.46155 * 65.82221 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7320 0.0055 5 6 3.5437 -0.6665 -0.0010 6 6 4.7680 -1.5453 -0.0016 7 7 5.0251 -2.0258 -1.3658 8 6 2.2590 -1.0913 -0.0005 9 6 1.7973 -2.5259 -0.0006 10 7 1.6463 -2.9916 -1.3855 11 6 0.5641 -2.2708 -2.0680 12 6 0.5311 -2.6757 -3.5436 13 6 0.3083 -4.1871 -3.6482 14 6 1.4221 -4.9129 -2.8884 15 1 2.3841 -4.6872 -3.3484 16 6 1.1777 -6.3992 -2.9365 17 1 1.0413 -6.9540 -2.0199 18 6 1.1285 -7.0509 -4.1505 19 7 1.2943 -6.3753 -5.2667 20 14 0.8263 -8.8933 -4.2100 21 1 -0.6335 -9.1530 -4.2926 22 1 1.4993 -9.4670 -5.4030 23 1 1.3727 -9.5245 -2.9820 24 6 1.4293 -4.4431 -1.4320 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5143 28 1 4.4054 1.3710 0.0110 29 1 5.6264 -0.9728 0.3497 30 1 4.6044 -2.3969 0.6587 31 1 5.1162 -1.2544 -2.0097 32 1 5.8420 -2.6175 -1.3929 33 1 2.5337 -3.1444 0.5126 34 1 0.8392 -2.5992 0.5140 35 1 -0.3889 -2.5201 -1.6016 36 1 0.7369 -1.1975 -1.9899 37 1 1.4789 -2.4142 -4.0141 38 1 -0.2821 -2.1523 -4.0464 39 1 0.3273 -4.4864 -4.6960 40 1 -0.6572 -4.4439 -3.2123 41 1 1.2601 -6.8338 -6.1207 42 1 2.2304 -4.9475 -0.8916 43 1 0.4722 -4.6822 -0.9685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580002299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:49 Heat of formation + Delta-G solvation = 60.521852 kcal Electronic energy + Delta-G solvation = -22749.106998 eV Core-core repulsion = 19636.813015 eV Total energy + Delta-G solvation = -3112.293982 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.32079 -39.65503 -35.83654 -35.77744 -34.02593 -33.35062 -31.64697 -31.03689 -28.16466 -27.03777 -26.81719 -24.80931 -23.60530 -23.11503 -21.64993 -20.41002 -19.99906 -18.38283 -17.50983 -17.17868 -16.58214 -16.47493 -15.83601 -15.68906 -15.27200 -15.13621 -14.94546 -14.66943 -14.42987 -14.09603 -13.91568 -13.72118 -13.54037 -13.26742 -13.11089 -12.87911 -12.80349 -12.57279 -12.44344 -12.36317 -11.81245 -11.67418 -11.42864 -11.34510 -10.87762 -10.61770 -10.32950 -10.20940 -9.33411 -9.14169 -9.00706 -8.02622 -6.16258 0.90282 1.44080 1.45211 1.55040 1.64493 1.86349 2.47059 3.20747 3.24830 3.61874 3.72848 4.02459 4.10759 4.13737 4.24972 4.34685 4.36289 4.43314 4.50127 4.53324 4.56572 4.61308 4.66748 4.76651 4.88057 4.92443 5.00630 5.01728 5.08713 5.23522 5.38956 5.42924 5.56085 5.68372 5.77536 6.01002 6.10613 6.18794 6.26589 6.36359 6.51755 6.54726 6.79663 6.86736 6.97404 7.51513 9.02040 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.004696 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.753669 B = 5961.608486 C = 6443.132059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.377 5.377 3 N -0.327 5.327 4 C 0.047 3.953 5 C -0.235 4.235 6 C 0.153 3.847 7 N -0.846 5.846 8 C 0.110 3.890 9 C 0.125 3.875 10 N -0.519 5.519 11 C 0.067 3.933 12 C -0.107 4.107 13 C -0.101 4.101 14 C 0.058 3.942 15 H -0.004 1.004 16 C -0.532 4.532 17 H 0.053 0.947 18 C 0.015 3.985 19 N -0.917 5.917 20 Si 0.952 3.048 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.088 3.912 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.204 0.796 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.338 0.662 32 H 0.343 0.657 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.025 0.975 41 H 0.258 0.742 42 H 0.060 0.940 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 12.109 11.654 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.160 5.160 3 N -0.148 5.148 4 C -0.138 4.138 5 C -0.247 4.247 6 C 0.021 3.979 7 N -0.377 5.377 8 C -0.018 4.018 9 C -0.004 4.004 10 N -0.244 5.244 11 C -0.061 4.061 12 C -0.145 4.145 13 C -0.140 4.140 14 C 0.039 3.961 15 H 0.015 0.985 16 C -0.570 4.570 17 H 0.071 0.929 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.039 4.039 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.221 0.779 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.769 12.843 11.297 17.122 hybrid contribution 0.493 -1.341 -0.049 1.429 sum 1.262 11.502 11.249 16.138 Atomic orbital electron populations 1.22255 0.73490 1.05392 1.04571 1.48610 1.07149 1.03139 1.57124 1.77245 1.02432 1.08853 1.26292 1.24144 0.95564 0.94718 0.99399 1.19938 0.94430 0.93716 1.16638 1.19837 0.92032 0.95477 0.90515 1.58556 1.46678 1.25185 1.07285 1.20818 0.91339 0.89824 0.99867 1.20539 1.00411 0.88949 0.90468 1.61798 1.44379 1.04600 1.13580 1.22162 0.91713 0.97505 0.94697 1.21537 1.00350 0.96921 0.95715 1.21447 0.97548 0.92963 1.02004 1.18514 0.93848 0.92995 0.90715 0.98542 1.21530 1.48789 0.94312 0.92393 0.92895 1.25691 0.95112 1.02111 0.95486 1.70050 1.50954 1.36850 0.97771 0.85658 0.78128 0.80857 0.77596 1.20278 1.21190 1.19182 1.21938 0.97790 0.85682 0.98480 0.89191 0.88433 0.89002 0.77920 0.93706 0.91494 0.85024 0.84342 0.88311 0.93616 0.94909 0.91221 0.93815 0.91752 0.92639 0.95661 0.93244 0.92177 0.96412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 10.26 127.77 1.31 2.95 16 2 N -0.38 -9.97 3.62 -356.01 -1.29 -11.25 16 3 N -0.33 -9.13 12.58 -57.03 -0.72 -9.85 16 4 C 0.05 1.15 11.96 85.23 1.02 2.17 16 5 C -0.23 -6.08 5.61 -20.14 -0.11 -6.19 16 6 C 0.15 3.45 6.94 85.56 0.59 4.05 16 7 N -0.85 -21.52 9.61 -190.00 -1.83 -23.35 16 8 C 0.11 3.05 5.58 41.40 0.23 3.28 16 9 C 0.13 3.56 4.89 85.56 0.42 3.98 16 10 N -0.52 -18.15 4.65 -900.94 -4.19 -22.34 16 11 C 0.07 2.24 3.92 86.33 0.34 2.58 16 12 C -0.11 -4.23 6.09 30.65 0.19 -4.05 16 13 C -0.10 -4.86 5.03 30.67 0.15 -4.71 16 14 C 0.06 2.94 2.26 -11.49 -0.03 2.91 16 15 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 16 C -0.53 -29.21 8.56 25.60 0.22 -28.99 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 18 C 0.01 0.81 5.30 84.65 0.45 1.26 16 19 N -0.92 -53.57 11.36 21.45 0.24 -53.33 16 20 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C 0.09 3.62 4.68 86.33 0.40 4.03 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 1.82 4.59 -2.39 -0.01 1.81 16 28 H 0.20 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.55 7.49 -2.39 -0.02 1.53 16 31 H 0.34 8.34 8.98 -89.70 -0.81 7.54 16 32 H 0.34 7.61 9.08 -89.69 -0.81 6.79 16 33 H 0.10 2.73 7.22 -2.39 -0.02 2.72 16 34 H 0.05 1.17 7.71 -2.38 -0.02 1.15 16 35 H 0.03 1.02 7.43 -2.39 -0.02 1.01 16 36 H 0.07 2.18 5.27 -2.39 -0.01 2.17 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 3.04 6.16 -2.39 -0.01 3.03 16 40 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.06 2.46 8.02 -2.39 -0.02 2.44 16 43 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -65.41 334.96 -1.16 -66.57 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.60 Total: 24.65 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 5.19 Total: -16.74 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -7.78 Total: -120.11 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -65.41 -1.16 -66.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580002299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.093 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds