Wall clock time and date at job start Tue Mar 31 2020 00:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99788 * 2 1 4 4 H 1.48507 * 109.46635 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47379 * 119.99726 * 3 2 1 6 6 H 1.48496 * 109.47292 * 240.00089 * 3 2 1 7 7 C 1.37877 * 120.00735 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00434 * 187.22805 * 7 2 1 9 9 C 1.50700 * 119.99392 * 7.22649 * 7 2 1 10 10 C 1.53000 * 115.55147 * 277.55369 * 9 7 2 11 11 N 1.46894 * 109.47370 * 305.27147 * 10 9 7 12 12 C 1.48795 * 111.00325 * 279.78298 * 11 10 9 13 13 C 1.55586 * 103.55834 * 199.31059 * 12 11 10 14 14 H 1.08997 * 109.53471 * 147.31003 * 13 12 11 15 15 C 1.51567 * 107.52383 * 266.47410 * 13 12 11 16 16 C 1.52230 * 112.85050 * 150.57220 * 15 13 12 17 17 C 1.53444 * 108.04943 * 301.26229 * 16 15 13 18 18 C 1.52531 * 107.61889 * 68.44311 * 17 16 15 19 19 C 1.49414 * 113.28171 * 305.31239 * 18 17 16 20 20 C 1.52995 * 105.70461 * 149.40320 * 19 18 17 21 21 N 1.46899 * 109.47217 * 58.89466 * 20 19 18 22 22 C 1.48734 * 110.99958 * 164.21334 * 11 10 9 23 23 C 1.53000 * 117.49907 * 131.85131 * 9 7 2 24 24 C 1.53001 * 60.00225 * 252.50804 * 23 9 7 25 25 H 0.97006 * 119.99327 * 174.90771 * 1 2 3 26 26 H 1.09006 * 109.47043 * 65.27213 * 10 9 7 27 27 H 1.09002 * 109.47073 * 185.26736 * 10 9 7 28 28 H 1.08995 * 110.60021 * 317.83375 * 12 11 10 29 29 H 1.09003 * 110.60211 * 80.79544 * 12 11 10 30 30 H 1.08997 * 108.80409 * 29.70630 * 15 13 12 31 31 H 1.08993 * 108.71739 * 271.38073 * 15 13 12 32 32 H 1.08995 * 109.75069 * 181.62370 * 16 15 13 33 33 H 1.08996 * 109.74739 * 60.89883 * 16 15 13 34 34 H 1.09004 * 109.82994 * 308.91423 * 17 16 15 35 35 H 1.09002 * 109.88654 * 188.00455 * 17 16 15 36 36 H 1.09003 * 108.71978 * 184.33137 * 18 17 16 37 37 H 1.08996 * 108.62156 * 66.22486 * 18 17 16 38 38 H 1.09001 * 109.47070 * 178.89234 * 20 19 18 39 39 H 1.09002 * 109.47565 * 298.89016 * 20 19 18 40 40 H 1.00903 * 111.00011 * 56.03620 * 21 20 19 41 41 H 1.00898 * 111.00288 * 179.97438 * 21 20 19 42 42 H 1.09001 * 110.39896 * 274.15082 * 22 11 10 43 43 H 1.08998 * 110.39871 * 36.44794 * 22 11 10 44 44 H 1.09008 * 117.49547 * 359.97438 * 23 9 7 45 45 H 1.09000 * 117.50637 * 145.01935 * 23 9 7 46 46 H 1.08992 * 117.49909 * 252.51025 * 24 23 9 47 47 H 1.08996 * 117.49912 * 107.48058 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0782 -1.1976 0.1182 9 6 1.2602 -2.4940 -0.1631 10 6 0.6286 -3.0576 1.1114 11 7 1.6571 -3.1861 2.1522 12 6 2.4656 -4.4194 1.9537 13 6 3.1157 -4.6576 3.3470 14 1 3.2288 -5.7281 3.5182 15 6 4.4789 -3.9952 3.3337 16 6 4.9172 -3.5168 4.7108 17 6 3.8681 -2.5217 5.2245 18 6 2.5871 -3.3024 5.5001 19 6 2.1095 -4.0883 4.3224 20 6 1.3992 -5.3130 4.9023 21 7 0.2933 -4.8751 5.7644 22 6 1.0391 -3.3627 3.4935 23 6 1.8023 -3.4947 -1.1855 24 6 0.5158 -2.7209 -1.4805 25 1 -0.4849 -0.8368 -0.0746 26 1 -0.1557 -2.3840 1.4568 27 1 0.1995 -4.0375 0.9016 28 1 1.8251 -5.2580 1.6807 29 1 3.2318 -4.2579 1.1954 30 1 4.4476 -3.1403 2.6583 31 1 5.2118 -4.7105 2.9606 32 1 5.8870 -3.0248 4.6384 33 1 4.9840 -4.3654 5.3915 34 1 3.6809 -1.7588 4.4687 35 1 4.2204 -2.0529 6.1433 36 1 1.8059 -2.6008 5.7926 37 1 2.7686 -3.9879 6.3278 38 1 1.0064 -5.9239 4.0896 39 1 2.1065 -5.8996 5.4886 40 1 -0.3428 -4.2757 5.2601 41 1 -0.1924 -5.6663 6.1595 42 1 0.8082 -2.3936 3.9360 43 1 0.1371 -3.9701 3.4192 44 1 2.6973 -3.2126 -1.7402 45 1 1.7093 -4.5550 -0.9504 46 1 -0.4236 -3.2720 -1.4392 47 1 0.5646 -1.9299 -2.2287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:42 Heat of formation + Delta-G solvation = 19.286052 kcal Electronic energy + Delta-G solvation = -23810.049340 eV Core-core repulsion = 20799.507582 eV Total energy + Delta-G solvation = -3010.541758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.52557 -37.15649 -35.00438 -34.59905 -31.72849 -31.28968 -30.32932 -26.64573 -26.12621 -24.64875 -24.16000 -22.27160 -21.21601 -20.93131 -20.47590 -19.25251 -18.15868 -16.45276 -16.03687 -15.12675 -14.78023 -14.61257 -14.23768 -14.10230 -13.89962 -13.72932 -13.63458 -13.20318 -12.86985 -12.58025 -12.18460 -11.83288 -11.74478 -11.57515 -11.50607 -11.32224 -10.94848 -10.71364 -10.67257 -10.61304 -10.44839 -10.29879 -10.02007 -9.89921 -9.83233 -9.71765 -9.39706 -8.70263 -8.41042 -8.33585 -8.15519 -7.56782 -6.18248 -3.86463 3.52139 3.53969 3.71874 4.44825 4.52957 4.63859 4.75369 4.85325 4.96585 5.23368 5.24785 5.32889 5.39801 5.48802 5.52797 5.59538 5.63583 5.69756 5.75654 5.77171 5.95128 6.01622 6.05829 6.07383 6.13468 6.23472 6.29537 6.30646 6.33703 6.39873 6.44579 6.49941 6.57369 6.58792 6.60819 6.71210 6.75939 6.83437 6.90428 7.07666 7.29182 7.33856 7.37127 7.59938 7.91430 8.45587 8.61089 9.05143 9.83813 11.21332 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.006361 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.490943 B = 4400.746635 C = 4856.004716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.040 3.960 10 C 0.088 3.912 11 N -0.468 5.468 12 C 0.039 3.961 13 C -0.072 4.072 14 H 0.064 0.936 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.078 4.078 19 C -0.041 4.041 20 C 0.061 3.939 21 N -0.850 5.850 22 C 0.042 3.958 23 C -0.199 4.199 24 C -0.186 4.186 25 H 0.270 0.730 26 H 0.067 0.933 27 H 0.001 0.999 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.067 0.933 40 H 0.342 0.658 41 H 0.335 0.665 42 H 0.079 0.921 43 H 0.027 0.973 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 -10.431 9.608 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.039 3.961 10 C -0.041 4.041 11 N -0.191 5.191 12 C -0.089 4.089 13 C -0.092 4.092 14 H 0.082 0.918 15 C -0.145 4.145 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.115 4.115 19 C -0.042 4.042 20 C -0.070 4.070 21 N -0.380 5.380 22 C -0.087 4.087 23 C -0.236 4.236 24 C -0.225 4.225 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.019 0.981 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.086 0.914 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.097 0.903 43 H 0.045 0.955 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.930 -7.950 10.075 13.748 hybrid contribution -1.163 -3.169 -0.909 3.496 sum 3.767 -11.118 9.166 14.894 Atomic orbital electron populations 1.70748 1.06767 1.31103 1.46498 1.25621 0.96542 1.01952 0.93848 0.83622 0.74938 0.75764 0.76390 1.21134 1.21482 1.21801 1.21051 0.94060 0.89218 1.53207 0.93135 1.19029 0.97086 0.95039 0.84938 1.21916 0.92871 0.95947 0.93327 1.65365 1.20423 1.33245 1.00064 1.23608 0.97605 0.91222 0.96462 1.21170 0.94982 0.98437 0.94567 0.91774 1.21105 0.94736 1.00975 0.97702 1.21406 0.98195 0.98614 0.96846 1.21581 0.95311 0.98278 1.00808 1.20477 0.97214 0.98303 0.95529 1.19881 0.94954 0.94631 0.94747 1.22515 0.93742 0.96335 0.94407 1.58819 1.15608 1.23502 1.40046 1.23277 0.94279 0.99543 0.91556 1.22857 0.97412 0.95261 1.08080 1.22789 0.93353 1.02450 1.03876 0.91883 0.91430 0.98052 0.95722 0.89869 0.90409 0.93052 0.92430 0.92801 0.90882 0.92627 0.91817 0.92369 0.96284 0.91432 0.84425 0.85365 0.90298 0.95484 0.90377 0.92119 0.92022 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.03 13.60 55.43 0.75 -26.27 16 2 C 0.02 0.68 5.40 -17.82 -0.10 0.59 16 3 Si 1.06 25.48 29.91 -169.99 -5.08 20.40 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.54 -14.76 8.50 -34.44 -0.29 -15.05 16 8 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 9 C 0.04 0.97 0.96 -155.66 -0.15 0.82 16 10 C 0.09 1.94 4.67 -3.83 -0.02 1.93 16 11 N -0.47 -9.29 4.99 -229.31 -1.14 -10.43 16 12 C 0.04 0.68 5.34 -1.40 -0.01 0.67 16 13 C -0.07 -1.03 2.70 -90.84 -0.25 -1.27 16 14 H 0.06 0.82 7.38 -51.93 -0.38 0.44 16 15 C -0.11 -1.51 5.10 -27.85 -0.14 -1.65 16 16 C -0.11 -1.42 5.97 -26.89 -0.16 -1.58 16 17 C -0.12 -1.67 6.06 -26.74 -0.16 -1.83 16 18 C -0.08 -1.05 4.24 -28.74 -0.12 -1.17 16 19 C -0.04 -0.58 0.79 -156.84 -0.12 -0.70 16 20 C 0.06 0.74 4.27 -3.83 -0.02 0.72 16 21 N -0.85 -9.48 8.98 -10.37 -0.09 -9.57 16 22 C 0.04 0.71 4.80 -2.49 -0.01 0.69 16 23 C -0.20 -4.34 9.59 -26.73 -0.26 -4.60 16 24 C -0.19 -4.34 8.95 -26.73 -0.24 -4.58 16 25 H 0.27 7.91 6.02 -40.82 -0.25 7.66 16 26 H 0.07 1.64 7.39 -51.93 -0.38 1.26 16 27 H 0.00 0.03 7.62 -51.93 -0.40 -0.37 16 28 H 0.02 0.42 7.73 -51.93 -0.40 0.02 16 29 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 30 H 0.08 1.31 7.59 -51.93 -0.39 0.92 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.91 7.49 -51.93 -0.39 0.52 16 37 H 0.06 0.75 7.42 -51.93 -0.39 0.36 16 38 H 0.02 0.24 7.97 -51.93 -0.41 -0.17 16 39 H 0.07 0.78 7.93 -51.93 -0.41 0.37 16 40 H 0.34 3.96 7.11 -39.29 -0.28 3.68 16 41 H 0.33 3.06 9.08 -39.29 -0.36 2.71 16 42 H 0.08 1.43 7.48 -51.93 -0.39 1.05 16 43 H 0.03 0.44 6.29 -51.93 -0.33 0.11 16 44 H 0.08 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -28.81 349.23 -10.90 -39.71 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.56 Total: 7.94 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.04 Total: -27.03 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.48 Total: -46.28 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.81 -10.90 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.999 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds