Wall clock time and date at job start Tue Mar 31 2020 01:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47077 * 2 1 4 4 N 1.46903 * 109.47317 * 239.99805 * 2 1 3 5 5 C 1.46894 * 110.99861 * 85.00138 * 4 2 1 6 6 C 1.53006 * 109.46771 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47326 * 55.00254 * 6 5 4 8 8 C 1.47200 * 109.46995 * 294.99844 * 6 5 4 9 9 N 4.90935 * 135.91565 * 247.76630 * 2 1 3 10 10 C 1.53006 * 109.46818 * 175.00127 * 6 5 4 11 11 C 1.50695 * 109.46839 * 184.99923 * 10 6 5 12 12 H 1.08001 * 120.00072 * 359.97438 * 11 10 6 13 13 C 1.37881 * 119.99876 * 180.02562 * 11 10 6 14 14 N 1.31503 * 120.00047 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99769 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46995 * 90.00030 * 15 13 11 17 17 H 1.48498 * 109.46735 * 209.99689 * 15 13 11 18 18 H 1.48496 * 109.47144 * 330.00118 * 15 13 11 19 19 C 1.52999 * 109.46595 * 119.99970 * 2 1 3 20 20 C 1.54245 * 109.63036 * 299.99849 * 19 2 1 21 21 C 1.45532 * 112.40824 * 160.11168 * 20 19 2 22 22 C 1.54241 * 112.40753 * 61.93924 * 21 20 19 23 23 C 1.50474 * 108.68067 * 279.91350 * 22 21 20 24 24 C 1.54268 * 112.38918 * 93.93390 * 23 22 21 25 25 C 1.50471 * 109.78547 * 180.87475 * 19 2 1 26 26 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.08988 * 109.47336 * 300.00414 * 1 2 3 28 28 H 1.09005 * 109.46448 * 60.00454 * 1 2 3 29 29 H 1.00896 * 110.99594 * 321.04444 * 4 2 1 30 30 H 1.08999 * 109.47344 * 300.00045 * 5 4 2 31 31 H 1.09004 * 109.47086 * 60.00323 * 5 4 2 32 32 H 1.08995 * 109.47153 * 304.99582 * 10 6 5 33 33 H 1.09004 * 109.46915 * 65.00112 * 10 6 5 34 34 H 0.97004 * 120.00022 * 180.02562 * 14 13 11 35 35 H 1.08992 * 109.62856 * 60.38400 * 19 2 1 36 36 H 1.09002 * 108.89218 * 39.35447 * 20 19 2 37 37 H 1.09000 * 108.89510 * 280.87350 * 20 19 2 38 38 H 1.09005 * 108.89581 * 301.18197 * 21 20 19 39 39 H 1.09000 * 108.81888 * 182.63775 * 21 20 19 40 40 H 1.09002 * 109.62887 * 39.72076 * 22 21 20 41 41 H 1.09005 * 109.63035 * 160.10789 * 22 21 20 42 42 H 1.08996 * 108.87961 * 215.02971 * 23 22 21 43 43 H 1.08995 * 108.87705 * 333.46943 * 23 22 21 44 44 H 1.09001 * 108.83427 * 197.61629 * 24 23 22 45 45 H 1.08996 * 108.65089 * 79.41336 * 24 23 22 46 46 H 1.08996 * 108.87764 * 334.72557 * 25 19 2 47 47 H 1.08998 * 108.88359 * 93.17486 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3468 6 6 2.5953 -0.5334 -3.5744 7 1 1.9693 -1.4082 -3.7500 8 6 3.9841 -0.9623 -3.3418 9 7 5.0566 -1.2924 -3.1616 10 6 2.5430 0.3848 -4.7972 11 6 2.9309 -0.3944 -6.0273 12 1 3.1892 -1.4398 -5.9452 13 6 2.9569 0.2276 -7.2576 14 7 2.6429 1.5006 -7.3576 15 14 3.4384 -0.7382 -8.7824 16 1 2.2250 -1.3410 -9.3902 17 1 4.0825 0.1728 -9.7624 18 1 4.3904 -1.8142 -8.4067 19 6 2.0400 -0.7213 1.2493 20 6 1.5278 0.0031 2.5111 21 6 1.5673 -0.8458 3.6926 22 6 3.0001 -1.2936 4.0471 23 6 3.3802 -2.4440 3.1547 24 6 4.1389 -1.9832 1.8930 25 6 3.5445 -0.7068 1.2674 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 1.4497 -1.4980 -1.4099 30 1 1.0873 0.6162 -2.5525 31 1 2.7591 1.0461 -2.1181 32 1 1.5317 0.7732 -4.9170 33 1 3.2368 1.2141 -4.6587 34 1 2.6609 1.9381 -8.2232 35 1 1.6836 -1.7513 1.2484 36 1 0.5000 0.3239 2.3412 37 1 2.1457 0.8834 2.6880 38 1 0.9555 -1.7298 3.5127 39 1 1.1511 -0.2945 4.5357 40 1 3.6916 -0.4655 3.8916 41 1 3.0373 -1.6109 5.0893 42 1 4.0078 -3.1347 3.7177 43 1 2.4741 -2.9654 2.8463 44 1 4.1104 -2.7833 1.1533 45 1 5.1779 -1.7922 2.1613 46 1 3.9086 -0.6131 0.2443 47 1 3.8821 0.1569 1.8403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653243507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:57 Heat of formation + Delta-G solvation = -15.973667 kcal Electronic energy + Delta-G solvation = -22078.021780 eV Core-core repulsion = 19065.951046 eV Total energy + Delta-G solvation = -3012.070734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59300 -37.33662 -35.68335 -33.79455 -32.74933 -32.37521 -30.99116 -29.03340 -26.35231 -25.16196 -24.29052 -22.89249 -21.78282 -21.15167 -20.38552 -19.19499 -16.91373 -16.39474 -15.92682 -15.17087 -14.89279 -14.73624 -14.50142 -14.33055 -14.08747 -13.63554 -13.23669 -13.12377 -12.96138 -12.68381 -12.30049 -12.15321 -12.09779 -11.92029 -11.75741 -11.55968 -11.28205 -11.16564 -11.05203 -10.77562 -10.69862 -10.63655 -10.55507 -10.51948 -10.29824 -10.25163 -10.17935 -10.00928 -9.50166 -9.20578 -8.45592 -8.19100 -6.09337 -4.12366 3.29230 3.36261 3.41174 3.77037 3.86690 4.18355 4.42003 4.49467 4.70628 4.76074 4.93928 4.94316 5.05073 5.15284 5.21865 5.28875 5.29261 5.31573 5.36541 5.48912 5.54033 5.63635 5.67704 5.68232 5.79228 5.87807 5.95748 5.99821 6.01747 6.04782 6.08512 6.12895 6.15279 6.26211 6.28875 6.40858 6.41623 6.48483 6.55983 6.64622 7.20795 7.43055 7.53167 7.57928 7.86084 8.23853 8.61981 8.92548 9.53111 11.01565 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.003348 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.859550 B = 8361.085925 C = 8959.015934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.076 0.924 4 N -0.686 5.686 5 C 0.067 3.933 6 C 0.009 3.991 7 H 0.098 0.902 8 C 0.256 3.744 9 N -0.480 5.480 10 C 0.032 3.968 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.067 4.067 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.110 4.110 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.340 0.660 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 -3.042 21.225 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.023 4.023 3 H 0.094 0.906 4 N -0.316 5.316 5 C -0.063 4.063 6 C -0.013 4.013 7 H 0.116 0.884 8 C -0.061 4.061 9 N -0.156 5.156 10 C -0.007 4.007 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.087 4.087 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.148 4.148 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.750 -3.313 21.522 22.096 hybrid contribution -1.117 -0.234 -1.274 1.711 sum -4.867 -3.547 20.248 21.125 Atomic orbital electron populations 1.22583 0.97549 1.02057 1.02167 1.21562 0.92162 0.98058 0.90473 0.90575 1.60560 1.57291 1.09889 1.03846 1.22082 1.00182 0.95204 0.88815 1.19213 0.84492 1.00717 0.96857 0.88435 1.28875 0.94734 0.92020 0.90498 1.81004 1.12788 1.10385 1.11470 1.19160 0.98721 0.93895 0.88905 1.21152 1.46603 0.96670 0.91975 0.92514 1.24953 0.95051 0.94859 0.99121 1.69935 1.48388 1.09906 1.24832 0.86597 0.78791 0.79957 0.82784 1.20496 1.21154 1.19833 1.20835 0.95940 0.99415 0.92463 1.20664 1.01526 0.98852 0.94700 1.20446 0.96877 0.99985 0.97803 1.21334 0.96779 0.98811 0.98541 1.21373 1.00325 0.97663 0.96192 1.21891 0.98712 0.98230 0.96307 1.21296 0.94765 0.96638 1.02065 0.92554 0.91942 0.92466 0.84145 0.93382 0.90663 0.94532 0.95606 0.92813 0.91153 0.91890 0.92378 0.92388 0.92773 0.91681 0.92573 0.92912 0.92339 0.92296 0.92955 0.90009 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.88 37.16 0.33 -1.35 16 2 C 0.09 0.92 2.10 -67.71 -0.14 0.77 16 3 H 0.08 0.86 7.80 -51.93 -0.40 0.45 16 4 N -0.69 -8.48 4.94 -106.72 -0.53 -9.00 16 5 C 0.07 0.96 4.85 -3.82 -0.02 0.95 16 6 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 7 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 8 C 0.26 5.31 13.67 -20.74 -0.28 5.03 16 9 N -0.48 -10.88 18.54 42.17 0.78 -10.10 16 10 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 11 C -0.53 -14.01 8.60 -34.44 -0.30 -14.31 16 12 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 15 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.07 -0.67 1.63 -91.23 -0.15 -0.81 16 20 C -0.12 -1.02 4.62 -29.60 -0.14 -1.16 16 21 C -0.11 -0.90 5.26 -29.60 -0.16 -1.06 16 22 C -0.12 -0.98 5.59 -27.34 -0.15 -1.13 16 23 C -0.12 -1.08 5.34 -27.33 -0.15 -1.22 16 24 C -0.11 -1.23 5.85 -25.51 -0.15 -1.38 16 25 C -0.11 -1.25 4.82 -27.43 -0.13 -1.38 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.06 0.51 6.06 -51.94 -0.31 0.20 16 28 H 0.06 0.55 7.45 -51.93 -0.39 0.17 16 29 H 0.34 3.91 8.47 -39.29 -0.33 3.57 16 30 H 0.05 0.64 7.44 -51.93 -0.39 0.26 16 31 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.07 0.73 6.99 -51.93 -0.36 0.37 16 36 H 0.06 0.50 5.64 -51.93 -0.29 0.21 16 37 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 38 H 0.06 0.46 7.48 -51.93 -0.39 0.07 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.58 6.98 -51.93 -0.36 0.22 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.54 6.65 -51.93 -0.35 0.19 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 1.15 6.93 -51.93 -0.36 0.79 16 47 H 0.05 0.54 6.63 -51.93 -0.34 0.19 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -29.06 360.28 -8.90 -37.96 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -8.43 Total: -0.91 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.87 Total: -14.88 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.99 Total: -43.94 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.06 -8.90 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653243507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.982 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds