Wall clock time and date at job start Tue Mar 31 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47077 * 2 1 4 4 N 1.46903 * 109.47317 * 239.99805 * 2 1 3 5 5 C 1.46894 * 110.99861 * 85.00138 * 4 2 1 6 6 C 1.53006 * 109.46771 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47326 * 55.00254 * 6 5 4 8 8 C 1.47200 * 109.46995 * 294.99844 * 6 5 4 9 9 N 4.90935 * 135.91565 * 247.76630 * 2 1 3 10 10 C 1.53006 * 109.46818 * 175.00127 * 6 5 4 11 11 C 1.50695 * 109.46839 * 184.99923 * 10 6 5 12 12 H 1.08001 * 120.00072 * 359.97438 * 11 10 6 13 13 C 1.37881 * 119.99876 * 180.02562 * 11 10 6 14 14 N 1.31503 * 120.00047 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99769 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46995 * 90.00030 * 15 13 11 17 17 H 1.48498 * 109.46735 * 209.99689 * 15 13 11 18 18 H 1.48496 * 109.47144 * 330.00118 * 15 13 11 19 19 C 1.52999 * 109.46595 * 119.99970 * 2 1 3 20 20 C 1.54245 * 109.63036 * 299.99849 * 19 2 1 21 21 C 1.45532 * 112.40824 * 160.11168 * 20 19 2 22 22 C 1.54241 * 112.40753 * 61.93924 * 21 20 19 23 23 C 1.50474 * 108.68067 * 279.91350 * 22 21 20 24 24 C 1.54268 * 112.38918 * 93.93390 * 23 22 21 25 25 C 1.50471 * 109.78547 * 180.87475 * 19 2 1 26 26 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.08988 * 109.47336 * 300.00414 * 1 2 3 28 28 H 1.09005 * 109.46448 * 60.00454 * 1 2 3 29 29 H 1.00896 * 110.99594 * 321.04444 * 4 2 1 30 30 H 1.08999 * 109.47344 * 300.00045 * 5 4 2 31 31 H 1.09004 * 109.47086 * 60.00323 * 5 4 2 32 32 H 1.08995 * 109.47153 * 304.99582 * 10 6 5 33 33 H 1.09004 * 109.46915 * 65.00112 * 10 6 5 34 34 H 0.97004 * 120.00022 * 180.02562 * 14 13 11 35 35 H 1.08992 * 109.62856 * 60.38400 * 19 2 1 36 36 H 1.09002 * 108.89218 * 39.35447 * 20 19 2 37 37 H 1.09000 * 108.89510 * 280.87350 * 20 19 2 38 38 H 1.09005 * 108.89581 * 301.18197 * 21 20 19 39 39 H 1.09000 * 108.81888 * 182.63775 * 21 20 19 40 40 H 1.09002 * 109.62887 * 39.72076 * 22 21 20 41 41 H 1.09005 * 109.63035 * 160.10789 * 22 21 20 42 42 H 1.08996 * 108.87961 * 215.02971 * 23 22 21 43 43 H 1.08995 * 108.87705 * 333.46943 * 23 22 21 44 44 H 1.09001 * 108.83427 * 197.61629 * 24 23 22 45 45 H 1.08996 * 108.65089 * 79.41336 * 24 23 22 46 46 H 1.08996 * 108.87764 * 334.72557 * 25 19 2 47 47 H 1.08998 * 108.88359 * 93.17486 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3468 6 6 2.5953 -0.5334 -3.5744 7 1 1.9693 -1.4082 -3.7500 8 6 3.9841 -0.9623 -3.3418 9 7 5.0566 -1.2924 -3.1616 10 6 2.5430 0.3848 -4.7972 11 6 2.9309 -0.3944 -6.0273 12 1 3.1892 -1.4398 -5.9452 13 6 2.9569 0.2276 -7.2576 14 7 2.6429 1.5006 -7.3576 15 14 3.4384 -0.7382 -8.7824 16 1 2.2250 -1.3410 -9.3902 17 1 4.0825 0.1728 -9.7624 18 1 4.3904 -1.8142 -8.4067 19 6 2.0400 -0.7213 1.2493 20 6 1.5278 0.0031 2.5111 21 6 1.5673 -0.8458 3.6926 22 6 3.0001 -1.2936 4.0471 23 6 3.3802 -2.4440 3.1547 24 6 4.1389 -1.9832 1.8930 25 6 3.5445 -0.7068 1.2674 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 1.4497 -1.4980 -1.4099 30 1 1.0873 0.6162 -2.5525 31 1 2.7591 1.0461 -2.1181 32 1 1.5317 0.7732 -4.9170 33 1 3.2368 1.2141 -4.6587 34 1 2.6609 1.9381 -8.2232 35 1 1.6836 -1.7513 1.2484 36 1 0.5000 0.3239 2.3412 37 1 2.1457 0.8834 2.6880 38 1 0.9555 -1.7298 3.5127 39 1 1.1511 -0.2945 4.5357 40 1 3.6916 -0.4655 3.8916 41 1 3.0373 -1.6109 5.0893 42 1 4.0078 -3.1347 3.7177 43 1 2.4741 -2.9654 2.8463 44 1 4.1104 -2.7833 1.1533 45 1 5.1779 -1.7922 2.1613 46 1 3.9086 -0.6131 0.2443 47 1 3.8821 0.1569 1.8403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653243507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:56 Heat of formation + Delta-G solvation = -30.614907 kcal Electronic energy + Delta-G solvation = -22078.656672 eV Core-core repulsion = 19065.951046 eV Total energy + Delta-G solvation = -3012.705626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41223 -38.65159 -36.95875 -35.54203 -34.18801 -33.27213 -32.24168 -30.08108 -27.93421 -26.08533 -25.05464 -24.33596 -23.47190 -22.03265 -21.13967 -20.03968 -18.56398 -18.24936 -16.77255 -16.61847 -16.01919 -15.77323 -15.58005 -15.32290 -15.23479 -14.75831 -14.34931 -14.29956 -14.16532 -13.84754 -13.66827 -13.62506 -13.24504 -13.05090 -12.94385 -12.86786 -12.76919 -12.48184 -12.44482 -12.34938 -12.00588 -11.89154 -11.52154 -11.45571 -11.34619 -11.31972 -11.22018 -11.03852 -10.97956 -10.73097 -10.55094 -9.17057 -8.19622 -6.27788 1.39719 1.41880 1.51130 2.09550 2.16429 2.41386 3.15591 3.20908 3.38500 3.74823 3.94192 3.99112 4.15895 4.23431 4.32405 4.36902 4.41080 4.45095 4.52185 4.56640 4.63749 4.72632 4.76393 4.78380 4.85130 4.97054 5.00332 5.06771 5.07584 5.24609 5.26514 5.30612 5.35470 5.39570 5.42686 5.47023 5.47817 5.56904 5.62058 5.63717 5.65679 5.72898 5.79560 6.14757 6.26363 6.63382 6.83876 6.95840 7.40838 8.91305 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.003348 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.859550 B = 8361.085925 C = 8959.015934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.068 0.932 4 N -0.692 5.692 5 C 0.082 3.918 6 C 0.020 3.980 7 H 0.119 0.881 8 C 0.266 3.734 9 N -0.516 5.516 10 C 0.038 3.962 11 C -0.539 4.539 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.061 4.061 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.105 4.105 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.348 0.652 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.035 0.965 33 H -0.002 1.002 34 H 0.264 0.736 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.050 0.950 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 -3.757 22.406 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.020 4.020 3 H 0.086 0.914 4 N -0.324 5.324 5 C -0.049 4.049 6 C -0.002 4.002 7 H 0.137 0.863 8 C -0.050 4.050 9 N -0.193 5.193 10 C 0.000 4.000 11 C -0.577 4.577 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.774 3.226 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.201 1.201 19 C -0.080 4.080 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.143 4.143 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.167 0.833 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.017 0.983 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.227 -4.040 22.715 23.656 hybrid contribution -0.623 -0.006 -1.619 1.735 sum -5.850 -4.046 21.096 22.263 Atomic orbital electron populations 1.22509 0.95923 1.02646 1.02610 1.21571 0.93363 0.97416 0.89682 0.91412 1.60483 1.58264 1.09960 1.03648 1.21840 1.00451 0.94590 0.87982 1.19187 0.83530 1.00807 0.96661 0.86347 1.29389 0.95093 0.91055 0.89470 1.81000 1.13885 1.11712 1.12718 1.18978 0.97570 0.93553 0.89930 1.21562 1.45922 0.96829 0.93384 0.92818 1.25715 0.95306 0.95731 1.02040 1.70029 1.49625 1.11177 1.25526 0.85692 0.78752 0.78536 0.79586 1.19068 1.21038 1.20146 1.20772 0.94668 0.99521 0.93026 1.20624 1.01936 0.98593 0.94075 1.20438 0.96572 1.00144 0.97862 1.21335 0.96968 0.98133 0.98984 1.21335 1.00199 0.98133 0.95387 1.21875 0.98817 0.97490 0.96910 1.21230 0.95988 0.96914 1.00144 0.91867 0.90640 0.92894 0.83302 0.91728 0.91731 0.94681 0.98311 0.92721 0.91223 0.90780 0.92763 0.92029 0.91572 0.92433 0.91396 0.92377 0.92096 0.93743 0.93516 0.93074 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.88 71.99 0.64 -2.15 16 2 C 0.09 1.74 2.10 44.92 0.09 1.83 16 3 H 0.07 1.45 7.80 -2.39 -0.02 1.43 16 4 N -0.69 -16.34 4.94 -491.55 -2.43 -18.77 16 5 C 0.08 2.27 4.85 86.31 0.42 2.69 16 6 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 7 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 8 C 0.27 11.07 13.67 89.44 1.22 12.29 16 9 N -0.52 -23.62 18.54 20.01 0.37 -23.25 16 10 C 0.04 1.78 4.42 29.85 0.13 1.91 16 11 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 12 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 13 C 0.01 0.60 5.46 84.66 0.46 1.07 16 14 N -0.92 -53.25 13.29 21.45 0.28 -52.96 16 15 Si 0.95 43.64 29.54 68.60 2.03 45.66 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 C -0.06 -1.12 1.63 -11.19 -0.02 -1.13 16 20 C -0.11 -1.70 4.62 28.74 0.13 -1.57 16 21 C -0.11 -1.50 5.26 28.73 0.15 -1.35 16 22 C -0.12 -1.72 5.59 30.20 0.17 -1.55 16 23 C -0.11 -1.90 5.34 30.21 0.16 -1.74 16 24 C -0.11 -2.43 5.85 31.39 0.18 -2.25 16 25 C -0.11 -2.37 4.82 30.14 0.15 -2.22 16 26 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 27 H 0.07 1.00 6.06 -2.39 -0.01 0.99 16 28 H 0.05 0.89 7.45 -2.38 -0.02 0.87 16 29 H 0.35 7.35 8.47 -89.70 -0.76 6.59 16 30 H 0.06 1.61 7.44 -2.39 -0.02 1.59 16 31 H 0.06 1.95 8.05 -2.39 -0.02 1.93 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.07 1.31 6.99 -2.39 -0.02 1.30 16 36 H 0.07 0.96 5.64 -2.39 -0.01 0.94 16 37 H 0.05 0.86 7.47 -2.39 -0.02 0.84 16 38 H 0.06 0.80 7.48 -2.38 -0.02 0.79 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.94 6.98 -2.39 -0.02 0.93 16 41 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 1.00 6.65 -2.39 -0.02 0.99 16 44 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.05 1.47 6.93 -2.39 -0.02 1.45 16 47 H 0.05 1.07 6.63 -2.39 -0.02 1.06 16 Total: -1.00 -62.07 360.28 4.51 -57.56 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.17 Total: 13.72 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.08 Total: -21.95 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -1.77 Total: -94.99 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -62.07 4.51 -57.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653243507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.943 kcal (2) G-P(sol) polarization free energy of solvation -62.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds