Wall clock time and date at job start Tue Mar 31 2020 00:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13611 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47395 * 357.22751 * 3 2 1 5 5 C 1.50704 * 109.47117 * 65.59912 * 4 3 2 6 6 H 1.07994 * 119.99999 * 35.10225 * 5 4 3 7 7 C 1.37882 * 119.99997 * 215.10562 * 5 4 3 8 8 N 1.31518 * 119.99957 * 5.42571 * 7 5 4 9 9 Si 1.86800 * 119.99863 * 185.42289 * 7 5 4 10 10 H 1.48503 * 109.46921 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46731 * 119.99846 * 9 7 5 12 12 H 1.48495 * 109.47496 * 240.00124 * 9 7 5 13 13 C 1.50698 * 109.47651 * 185.59906 * 4 3 2 14 14 C 1.38246 * 119.98733 * 300.25533 * 13 4 3 15 15 C 1.38221 * 120.01002 * 180.20540 * 14 13 4 16 16 C 1.38329 * 119.98763 * 359.51548 * 15 14 13 17 17 Br 1.89097 * 120.00901 * 180.27421 * 16 15 14 18 18 C 1.38323 * 119.98084 * 0.25625 * 16 15 14 19 19 C 1.38224 * 119.98894 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.46865 * 237.23187 * 3 2 1 21 21 H 1.08994 * 109.47229 * 117.23058 * 3 2 1 22 22 H 1.09005 * 109.47188 * 305.59955 * 4 3 2 23 23 H 0.96993 * 119.99719 * 180.02562 * 8 7 5 24 24 H 1.07999 * 119.99317 * 359.97438 * 14 13 4 25 25 H 1.08000 * 120.00220 * 179.79320 * 15 14 13 26 26 H 1.08001 * 120.00728 * 180.02562 * 18 16 15 27 27 H 1.08003 * 119.99130 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4399 0.0698 5 6 2.7331 -2.1711 -1.1903 6 1 2.7165 -1.6477 -2.1348 7 6 2.4015 -3.5084 -1.1372 8 7 2.3177 -4.1196 0.0243 9 14 2.0711 -4.4521 -2.7152 10 1 2.2301 -3.5426 -3.8783 11 1 3.0349 -5.5758 -2.8308 12 1 0.6864 -4.9879 -2.6909 13 6 4.6193 -1.4348 0.2083 14 6 5.4014 -0.8454 -0.7675 15 6 6.7780 -0.8442 -0.6430 16 6 7.3726 -1.4241 0.4632 17 35 9.2555 -1.4160 0.6380 18 6 6.5895 -2.0096 1.4417 19 6 5.2132 -2.0145 1.3139 20 1 2.9711 0.5571 0.8642 21 1 2.9712 0.4710 -0.9137 22 1 2.6761 -1.9410 0.9306 23 1 2.0847 -5.0604 0.0616 24 1 4.9368 -0.3891 -1.6291 25 1 7.3889 -0.3867 -1.4070 26 1 7.0533 -2.4621 2.3057 27 1 4.6017 -2.4712 2.0780 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149138867.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:46 Heat of formation + Delta-G solvation = 35.608427 kcal Electronic energy + Delta-G solvation = -13508.342364 eV Core-core repulsion = 11083.738836 eV Total energy + Delta-G solvation = -2424.603528 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 278.995 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.84310 -36.11212 -34.25040 -32.01177 -30.83948 -30.40489 -28.18750 -25.77389 -22.84404 -22.11375 -20.03489 -17.00289 -16.52740 -15.91458 -14.67030 -14.55045 -14.40040 -13.73188 -13.16419 -12.90297 -12.78740 -12.46767 -11.91288 -11.69143 -11.50591 -11.11343 -10.85123 -10.73811 -10.61303 -10.45347 -10.22816 -9.96176 -9.60233 -9.32016 -8.68799 -8.41297 -7.85209 -6.26655 -4.31022 1.77800 1.94207 2.04008 3.20396 3.29553 3.31563 3.65053 3.67759 4.24452 4.35601 4.93529 5.13328 5.35700 5.41340 5.87867 5.96620 6.03361 6.05967 6.18039 6.39127 6.44040 6.56742 6.77738 7.04898 7.13367 7.48718 7.57414 7.69506 8.01523 8.47218 8.75639 9.34893 10.81593 Molecular weight = 279.00amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.005466 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.730555 B = 5120.935504 C = 5814.903993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.242 3.758 3 C -0.020 4.020 4 C 0.065 3.935 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.074 3.926 8 N -0.879 5.879 9 Si 0.891 3.109 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.283 1.283 13 C -0.007 4.007 14 C -0.111 4.111 15 C -0.098 4.098 16 C -0.115 4.115 17 Br -0.085 7.085 18 C -0.094 4.094 19 C -0.114 4.114 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.079 0.921 23 H 0.265 0.735 24 H 0.127 0.873 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.290 5.832 2.046 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.074 4.074 3 C -0.060 4.060 4 C 0.045 3.955 5 C -0.555 4.555 6 H 0.081 0.919 7 C -0.131 4.131 8 N -0.515 5.515 9 Si 0.718 3.282 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.209 1.209 13 C -0.009 4.009 14 C -0.129 4.129 15 C -0.117 4.117 16 C -0.194 4.194 17 Br 0.000 7.000 18 C -0.114 4.114 19 C -0.133 4.133 20 H 0.103 0.897 21 H 0.112 0.888 22 H 0.097 0.903 23 H 0.075 0.925 24 H 0.145 0.855 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.239 5.657 2.197 13.661 hybrid contribution -0.001 -0.918 -0.953 1.323 sum 12.238 4.739 1.245 13.182 Atomic orbital electron populations 1.81034 1.13493 1.10609 1.10215 1.29053 0.95208 0.91265 0.91888 1.19535 0.81753 1.01764 1.02969 1.18080 0.86671 0.89467 1.01281 1.20980 1.46589 0.94917 0.92983 0.91882 1.24965 0.93960 0.97958 0.96233 1.69878 1.46490 1.11297 1.23830 0.86539 0.77968 0.80113 0.83568 1.19414 1.20706 1.20909 1.20770 0.98582 0.90625 0.90880 1.21004 0.91951 1.00614 0.99376 1.20961 0.95348 0.99335 0.96101 1.21458 0.88253 1.09213 1.00434 1.96559 1.06742 1.98423 1.98267 1.20971 0.93978 0.98765 0.97703 1.21141 0.93194 1.00184 0.98787 0.89735 0.88825 0.90259 0.92492 0.85502 0.86278 0.86311 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.47 18.54 42.16 0.78 -9.69 15 2 C 0.24 4.78 14.87 -20.76 -0.31 4.48 15 3 C -0.02 -0.33 4.90 -29.52 -0.14 -0.47 15 4 C 0.06 1.32 2.09 -92.92 -0.19 1.13 15 5 C -0.52 -12.27 7.38 -34.44 -0.25 -12.53 15 6 H 0.06 1.48 7.82 -52.49 -0.41 1.07 15 7 C 0.07 1.87 5.45 -17.82 -0.10 1.78 15 8 N -0.88 -23.38 12.77 55.43 0.71 -22.67 15 9 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 15 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 13 C -0.01 -0.14 4.77 -104.62 -0.50 -0.64 15 14 C -0.11 -1.84 8.87 -39.58 -0.35 -2.19 15 15 C -0.10 -1.51 9.79 -39.55 -0.39 -1.90 15 16 C -0.11 -1.80 6.22 -39.52 -0.25 -2.05 15 17 Br -0.08 -1.15 33.70 -68.01 -2.29 -3.44 15 18 C -0.09 -1.52 9.79 -39.56 -0.39 -1.91 15 19 C -0.11 -2.03 9.67 -39.59 -0.38 -2.41 15 20 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.09 1.37 7.58 -51.93 -0.39 0.97 15 22 H 0.08 1.84 6.96 -51.93 -0.36 1.48 15 23 H 0.27 6.82 8.31 -40.82 -0.34 6.49 15 24 H 0.13 1.95 7.63 -52.49 -0.40 1.55 15 25 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 26 H 0.12 1.70 8.06 -52.49 -0.42 1.27 15 27 H 0.13 2.25 7.95 -52.48 -0.42 1.83 15 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -27.03 270.17 -7.39 -34.43 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -2.39 Total: -1.28 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -3.25 Total: -16.73 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 1.49 Total: -32.36 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 35 Polarization: -1.15 SS G_CDS: -2.29 Total: -3.44 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.03 -7.39 -34.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149138867.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.034 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds