Wall clock time and date at job start Tue Mar 31 2020 00:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.89088 * 2 1 4 4 N 1.40088 * 108.23564 * 180.26015 * 3 2 1 5 5 C 1.46494 * 126.03566 * 179.75740 * 4 3 2 6 6 C 1.34983 * 107.92306 * 359.71861 * 4 3 2 7 7 Cl 1.73606 * 126.13561 * 179.97438 * 6 4 3 8 8 C 1.35457 * 107.72106 * 0.02562 * 6 4 3 9 9 S 1.76203 * 126.05235 * 179.97438 * 8 6 4 10 10 O 1.42102 * 106.40008 * 336.48842 * 9 8 6 11 11 O 1.42099 * 106.40540 * 203.56305 * 9 8 6 12 12 N 1.65608 * 107.21790 * 90.02284 * 9 8 6 13 13 C 1.36938 * 119.99577 * 64.99816 * 12 9 8 14 14 H 1.07999 * 120.00321 * 0.02562 * 13 12 9 15 15 C 1.38815 * 119.99825 * 179.97438 * 13 12 9 16 16 N 1.31625 * 119.99700 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00119 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47163 * 60.00145 * 17 15 13 19 19 H 1.48505 * 109.47234 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47012 * 299.99961 * 17 15 13 21 21 H 1.09003 * 109.47032 * 270.21458 * 1 2 3 22 22 H 1.09010 * 109.47139 * 30.20862 * 1 2 3 23 23 H 1.08998 * 109.47195 * 150.20907 * 1 2 3 24 24 H 1.09000 * 109.46979 * 269.95776 * 5 4 3 25 25 H 1.09004 * 109.47249 * 29.95532 * 5 4 3 26 26 H 1.09003 * 109.47282 * 149.95748 * 5 4 3 27 27 H 0.96995 * 120.00068 * 244.72731 * 12 9 8 28 28 H 0.97000 * 119.99481 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6089 0.6351 -0.0060 5 6 4.7894 1.5025 -0.0131 6 6 3.6152 -0.7147 -0.0033 7 17 5.0221 -1.7319 -0.0092 8 6 2.3269 -1.1331 0.0036 9 16 1.7806 -2.8083 0.0089 10 8 2.8419 -3.5782 -0.5389 11 8 0.4656 -2.8033 -0.5297 12 7 1.6357 -3.2716 1.5922 13 6 0.7030 -2.6744 2.3977 14 1 0.0617 -1.9016 2.0003 15 6 0.5812 -3.0631 3.7247 16 7 1.3624 -4.0053 4.2088 17 14 -0.6915 -2.2491 4.8233 18 1 -2.0471 -2.4705 4.2587 19 1 -0.6195 -2.8379 6.1847 20 1 -0.4193 -0.7913 4.9001 21 1 -0.3633 0.0038 1.0277 22 1 -0.3634 0.8882 -0.5171 23 1 -0.3633 -0.8918 -0.5106 24 1 5.0775 1.7156 -1.0425 25 1 4.5575 2.4359 0.4999 26 1 5.6115 1.0015 0.4980 27 1 2.2087 -3.9687 1.9479 28 1 1.2770 -4.2772 5.1360 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152454276.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:28 Heat of formation + Delta-G solvation = -24.771046 kcal Electronic energy + Delta-G solvation = -18229.143636 eV Core-core repulsion = 15048.253152 eV Total energy + Delta-G solvation = -3180.890484 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 279.023 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.48118 -38.29538 -37.85081 -36.57714 -36.36070 -35.15618 -32.72371 -31.58348 -30.44911 -26.75414 -26.31494 -23.00199 -21.62372 -20.17051 -19.87025 -18.90096 -18.12001 -17.00745 -16.87561 -16.52795 -16.15436 -15.78840 -15.22016 -14.52816 -14.41306 -13.84036 -13.79483 -13.70044 -13.47454 -13.18777 -12.97867 -12.90488 -12.83136 -12.71184 -12.53354 -12.26054 -12.20025 -11.93479 -11.75514 -11.54844 -10.36805 -10.26899 -10.06235 -8.22447 -5.78808 -0.16870 0.07594 0.18616 1.06820 1.48174 1.52382 1.55720 1.61342 2.39099 2.77534 3.02577 3.11119 3.34697 3.63580 3.81570 4.21291 4.24183 4.33361 4.49687 4.75940 4.82943 4.92884 5.20484 5.36089 5.54578 5.71044 6.19236 6.84305 7.06778 7.42811 8.96115 Molecular weight = 279.02amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.008082 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.473942 B = 3463.769138 C = 3721.560328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.162 3.838 3 N -0.292 5.292 4 N -0.351 5.351 5 C 0.075 3.925 6 C 0.221 3.779 7 Cl 0.037 6.963 8 C -0.804 4.804 9 S 2.697 3.303 10 O -0.998 6.998 11 O -0.983 6.983 12 N -0.974 5.974 13 C -0.307 4.307 14 H 0.111 0.889 15 C -0.018 4.018 16 N -0.932 5.932 17 Si 0.974 3.026 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.405 0.595 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 10.532 -5.956 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.005 4.005 3 N -0.115 5.115 4 N -0.132 5.132 5 C -0.064 4.064 6 C 0.059 3.941 7 Cl 0.065 6.935 8 C -0.901 4.901 9 S 2.785 3.215 10 O -0.988 6.988 11 O -0.974 6.974 12 N -0.728 5.728 13 C -0.441 4.441 14 H 0.129 0.871 15 C -0.219 4.219 16 N -0.575 5.575 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.211 1.211 20 H -0.191 1.191 21 H 0.113 0.887 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.240 0.760 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.851 11.460 -6.676 14.496 hybrid contribution 0.437 -0.483 1.210 1.374 sum 6.288 10.977 -5.466 13.781 Atomic orbital electron populations 1.20893 0.84071 1.06424 1.05310 1.22136 0.97985 0.87722 0.92696 1.77388 0.85493 1.21271 1.27348 1.49411 1.07526 1.02645 1.53570 1.22577 0.82306 0.95275 1.06238 1.21468 0.90027 0.84957 0.97600 1.98461 1.35871 1.63021 1.96167 1.31689 0.98761 1.27002 1.32642 1.02039 0.72987 0.73158 0.73323 1.93455 1.57026 1.69830 1.78511 1.93410 1.38453 1.87081 1.78427 1.51303 1.45555 1.46056 1.29863 1.19489 1.11378 1.20120 0.93064 0.87126 1.25911 1.00177 0.97566 0.98261 1.69797 1.40718 1.30882 1.16091 0.85265 0.79049 0.78572 0.77306 1.18749 1.21110 1.19089 0.88658 0.87694 0.87831 0.87496 0.86623 0.87346 0.76016 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.51 9.74 71.24 0.69 -2.81 15 2 C 0.16 6.01 7.21 43.10 0.31 6.32 15 3 N -0.29 -10.02 12.57 -47.39 -0.60 -10.62 15 4 N -0.35 -10.68 4.01 -359.27 -1.44 -12.12 15 5 C 0.07 1.32 11.31 127.77 1.44 2.77 15 6 C 0.22 7.80 7.43 83.57 0.62 8.42 15 7 Cl 0.04 1.15 27.06 -2.72 -0.07 1.08 15 8 C -0.80 -32.09 6.09 22.02 0.13 -31.95 15 9 S 2.70 119.95 5.76 -56.49 -0.33 119.62 15 10 O -1.00 -45.54 16.31 -128.00 -2.09 -47.63 15 11 O -0.98 -46.00 15.06 -128.00 -1.93 -47.92 15 12 N -0.97 -47.91 5.75 -54.26 -0.31 -48.22 15 13 C -0.31 -15.63 9.63 84.03 0.81 -14.82 15 14 H 0.11 5.25 6.68 -2.91 -0.02 5.23 15 15 C -0.02 -0.95 5.50 84.86 0.47 -0.48 15 16 N -0.93 -51.21 13.06 21.65 0.28 -50.92 15 17 Si 0.97 40.69 29.55 68.60 2.03 42.72 15 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 19 H -0.29 -11.89 7.11 99.48 0.71 -11.19 15 20 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 21 H 0.10 2.96 7.44 -2.39 -0.02 2.95 15 22 H 0.10 2.67 8.14 -2.38 -0.02 2.66 15 23 H 0.10 3.63 5.66 -2.39 -0.01 3.62 15 24 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 25 H 0.12 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.11 1.56 7.81 -2.39 -0.02 1.54 15 27 H 0.41 20.61 8.02 -96.75 -0.78 19.83 15 28 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 Total: -1.00 -65.81 275.71 0.47 -65.34 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.45 Total: 21.25 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 4.48 Total: -32.56 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -2.07 Total: -121.89 kcal Atomic # 8 Polarization: -91.54 SS G_CDS: -4.02 Total: -95.56 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 119.95 SS G_CDS: -0.33 Total: 119.62 kcal Atomic # 17 Polarization: 1.15 SS G_CDS: -0.07 Total: 1.08 kcal Total: -65.81 0.47 -65.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152454276.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.567 kcal (2) G-P(sol) polarization free energy of solvation -65.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds