Wall clock time and date at job start Tue Mar 31 2020 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47177 * 274.98488 * 3 2 1 5 5 H 1.48502 * 109.47127 * 34.97954 * 3 2 1 6 6 H 1.48493 * 109.47253 * 154.98126 * 3 2 1 7 7 C 1.40042 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00096 * 186.15113 * 7 2 1 9 9 C 1.46375 * 120.00170 * 6.15206 * 7 2 1 10 10 O 1.21695 * 119.99693 * 353.93877 * 9 7 2 11 11 N 1.34772 * 120.00131 * 173.94085 * 9 7 2 12 12 C 1.46501 * 119.99823 * 180.27515 * 11 9 7 13 13 C 1.50700 * 109.47206 * 179.72209 * 12 11 9 14 14 C 1.38531 * 122.55347 * 104.99773 * 13 12 11 15 15 C 1.33459 * 114.89191 * 179.97438 * 14 13 12 16 16 Cl 1.73593 * 125.19292 * 180.02562 * 15 14 13 17 17 S 1.75876 * 109.61133 * 0.02562 * 15 14 13 18 18 C 1.33452 * 122.55306 * 284.70909 * 13 12 11 19 19 Cl 1.73596 * 125.19680 * 359.97438 * 18 13 12 20 20 H 0.97000 * 120.00488 * 0.02562 * 1 2 3 21 21 H 0.96992 * 120.00439 * 359.97438 * 11 9 7 22 22 H 1.09002 * 109.47294 * 299.72437 * 12 11 9 23 23 H 1.09008 * 109.47412 * 59.72371 * 12 11 9 24 24 H 1.08000 * 122.55543 * 0.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4946 2.6200 0.8026 6 1 3.5868 1.4123 0.5921 7 6 2.0070 -1.2127 0.0005 8 1 3.0824 -1.2153 0.1008 9 6 1.2816 -2.4769 -0.1347 10 8 0.0646 -2.4828 -0.1367 11 7 1.9613 -3.6342 -0.2571 12 6 1.2353 -4.8987 -0.3985 13 6 2.2203 -6.0323 -0.5236 14 6 2.4777 -6.9140 0.5135 15 6 3.3769 -7.8604 0.2361 16 17 3.8975 -9.0988 1.3355 17 16 3.9538 -7.6612 -1.4134 18 6 2.9070 -6.2667 -1.6436 19 17 2.7873 -5.3358 -3.1040 20 1 -0.4851 0.8400 -0.0004 21 1 2.9313 -3.6294 -0.2558 22 1 0.6079 -5.0576 0.4786 23 1 0.6098 -4.8608 -1.2905 24 1 1.9874 -6.8416 1.4730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306216122.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:26 Heat of formation + Delta-G solvation = -20.018673 kcal Electronic energy + Delta-G solvation = -14513.812329 eV Core-core repulsion = 11605.711242 eV Total energy + Delta-G solvation = -2908.101087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 278.963 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.87268 -37.17403 -36.85807 -36.37001 -33.11044 -32.21033 -29.43604 -27.13932 -25.41767 -22.82376 -19.75475 -19.35915 -18.38377 -17.15656 -15.86980 -15.32412 -14.69349 -14.43259 -14.06941 -13.84196 -13.71295 -12.91371 -12.64672 -12.54993 -12.17175 -11.59656 -11.42782 -11.19206 -11.02922 -11.00033 -10.86159 -10.65543 -10.43846 -10.21688 -8.84624 -8.75271 -8.64666 -7.60349 -7.53586 -6.19364 -4.63164 0.48870 0.62016 1.41935 1.84724 2.26039 2.30998 3.14525 3.21945 3.25425 4.12059 4.58993 4.86155 5.06668 5.16747 5.49982 5.57865 5.81137 5.94350 6.36189 6.45174 7.44374 7.90477 8.04931 8.32966 9.03102 9.51270 10.59312 10.77532 Molecular weight = 278.96amu Principal moments of inertia in cm(-1) A = 0.026142 B = 0.004470 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.828065 B = 6262.204251 C = 6681.554704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.558 3.442 10 O -0.580 6.580 11 N -0.759 5.759 12 C 0.189 3.811 13 C -0.086 4.086 14 C -0.092 4.092 15 C -0.150 4.150 16 Cl -0.011 7.011 17 S 0.181 5.819 18 C -0.132 4.132 19 Cl 0.010 6.990 20 H 0.268 0.732 21 H 0.381 0.619 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 -15.611 -1.893 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.362 3.638 10 O -0.463 6.463 11 N -0.415 5.415 12 C 0.062 3.938 13 C -0.100 4.100 14 C -0.124 4.124 15 C -0.294 4.294 16 Cl 0.018 6.982 17 S 0.442 5.558 18 C -0.277 4.277 19 Cl 0.038 6.962 20 H 0.079 0.921 21 H 0.212 0.788 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.835 -16.318 -2.832 18.771 hybrid contribution 0.017 1.415 0.844 1.648 sum 8.852 -14.903 -1.987 17.447 Atomic orbital electron populations 1.70021 1.07058 1.27257 1.35298 1.25687 0.94580 1.00240 0.92607 0.86378 0.80270 0.81555 0.78676 1.19824 1.20453 1.18877 1.20859 0.94102 0.89437 1.53694 0.91392 1.18215 0.87109 0.82156 0.76352 1.90606 1.14062 1.86231 1.55400 1.46147 1.08586 1.04829 1.81953 1.19546 0.91134 0.81249 1.01904 1.19146 1.00241 0.99472 0.91102 1.20052 0.98030 0.93248 1.01083 1.25099 1.06804 1.00275 0.97218 1.98369 1.89414 1.50324 1.60096 1.84347 1.41357 1.24995 1.05138 1.25204 1.06347 1.01537 0.94631 1.98409 1.96765 1.70116 1.30862 0.92120 0.78758 0.91782 0.91573 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.91 11.85 55.55 0.66 -22.25 14 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 14 3 Si 0.91 20.09 29.56 -169.99 -5.03 15.07 14 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 14 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 14 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 14 7 C -0.54 -15.25 9.53 -35.63 -0.34 -15.59 14 8 H 0.07 1.76 7.85 -52.48 -0.41 1.34 14 9 C 0.56 15.63 7.74 -12.99 -0.10 15.53 14 10 O -0.58 -18.55 15.05 5.19 0.08 -18.47 14 11 N -0.76 -16.67 5.54 -62.90 -0.35 -17.02 14 12 C 0.19 3.54 5.50 -5.19 -0.03 3.51 14 13 C -0.09 -1.27 5.18 -106.19 -0.55 -1.82 14 14 C -0.09 -1.18 9.89 -41.15 -0.41 -1.59 14 15 C -0.15 -1.75 7.09 29.06 0.21 -1.54 14 16 Cl -0.01 -0.11 29.28 -51.86 -1.52 -1.63 14 17 S 0.18 2.02 23.34 -107.50 -2.51 -0.49 14 18 C -0.13 -1.84 7.07 29.06 0.21 -1.63 14 19 Cl 0.01 0.14 28.63 -51.86 -1.48 -1.34 14 20 H 0.27 7.25 8.29 -40.82 -0.34 6.92 14 21 H 0.38 7.61 8.44 -40.82 -0.34 7.27 14 22 H 0.06 1.23 8.07 -51.93 -0.42 0.81 14 23 H 0.07 1.33 7.99 -51.92 -0.41 0.91 14 24 H 0.16 1.85 8.06 -52.49 -0.42 1.43 14 LS Contribution 270.78 15.07 4.08 4.08 Total: -1.00 -32.27 270.78 -8.33 -40.60 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -1.15 Total: 2.22 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.11 Total: -0.78 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.31 Total: -39.27 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.08 Total: -18.47 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.07 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.49 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -3.00 Total: -2.97 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.27 -8.33 -40.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306216122.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.581 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds