Wall clock time and date at job start Tue Mar 31 2020 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47177 * 274.98488 * 3 2 1 5 5 H 1.48502 * 109.47127 * 34.97954 * 3 2 1 6 6 H 1.48493 * 109.47253 * 154.98126 * 3 2 1 7 7 C 1.40042 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00096 * 186.15113 * 7 2 1 9 9 C 1.46375 * 120.00170 * 6.15206 * 7 2 1 10 10 O 1.21695 * 119.99693 * 353.93877 * 9 7 2 11 11 N 1.34772 * 120.00131 * 173.94085 * 9 7 2 12 12 C 1.46501 * 119.99823 * 180.27515 * 11 9 7 13 13 C 1.50700 * 109.47206 * 179.72209 * 12 11 9 14 14 C 1.38531 * 122.55347 * 104.99773 * 13 12 11 15 15 C 1.33459 * 114.89191 * 179.97438 * 14 13 12 16 16 Cl 1.73593 * 125.19292 * 180.02562 * 15 14 13 17 17 S 1.75876 * 109.61133 * 0.02562 * 15 14 13 18 18 C 1.33452 * 122.55306 * 284.70909 * 13 12 11 19 19 Cl 1.73596 * 125.19680 * 359.97438 * 18 13 12 20 20 H 0.97000 * 120.00488 * 0.02562 * 1 2 3 21 21 H 0.96992 * 120.00439 * 359.97438 * 11 9 7 22 22 H 1.09002 * 109.47294 * 299.72437 * 12 11 9 23 23 H 1.09008 * 109.47412 * 59.72371 * 12 11 9 24 24 H 1.08000 * 122.55543 * 0.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4946 2.6200 0.8026 6 1 3.5868 1.4123 0.5921 7 6 2.0070 -1.2127 0.0005 8 1 3.0824 -1.2153 0.1008 9 6 1.2816 -2.4769 -0.1347 10 8 0.0646 -2.4828 -0.1367 11 7 1.9613 -3.6342 -0.2571 12 6 1.2353 -4.8987 -0.3985 13 6 2.2203 -6.0323 -0.5236 14 6 2.4777 -6.9140 0.5135 15 6 3.3769 -7.8604 0.2361 16 17 3.8975 -9.0988 1.3355 17 16 3.9538 -7.6612 -1.4134 18 6 2.9070 -6.2667 -1.6436 19 17 2.7873 -5.3358 -3.1040 20 1 -0.4851 0.8400 -0.0004 21 1 2.9313 -3.6294 -0.2558 22 1 0.6079 -5.0576 0.4786 23 1 0.6098 -4.8608 -1.2905 24 1 1.9874 -6.8416 1.4730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306216122.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:26 Heat of formation + Delta-G solvation = -41.762391 kcal Electronic energy + Delta-G solvation = -14514.755208 eV Core-core repulsion = 11605.711242 eV Total energy + Delta-G solvation = -2909.043965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 278.963 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17241 -38.88656 -37.98667 -37.49213 -35.00173 -34.28522 -30.76250 -28.87606 -27.12747 -24.04540 -21.73934 -20.57142 -19.61915 -18.87850 -17.45284 -17.04974 -16.23131 -15.87517 -15.45266 -15.28724 -15.04078 -14.39872 -14.32762 -13.68500 -13.55581 -13.22890 -13.08926 -12.72287 -12.68824 -12.56558 -12.10160 -11.99097 -11.88856 -11.76558 -10.91441 -9.99785 -9.70157 -9.57562 -9.46826 -8.27852 -6.82516 -0.56213 -0.37741 0.39636 0.85716 1.18405 1.21810 1.42107 1.42570 1.58548 2.26977 2.49558 3.25151 3.63222 3.76256 3.99318 4.28526 4.52725 4.69857 4.87100 5.09233 5.34769 5.89170 6.18457 6.27463 6.89386 7.53698 8.50304 8.68859 Molecular weight = 278.96amu Principal moments of inertia in cm(-1) A = 0.026142 B = 0.004470 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.828065 B = 6262.204251 C = 6681.554704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.031 3.969 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.572 4.572 8 H 0.086 0.914 9 C 0.544 3.456 10 O -0.631 6.631 11 N -0.744 5.744 12 C 0.194 3.806 13 C -0.095 4.095 14 C -0.101 4.101 15 C -0.148 4.148 16 Cl 0.008 6.992 17 S 0.250 5.750 18 C -0.146 4.146 19 Cl -0.002 7.002 20 H 0.274 0.726 21 H 0.393 0.607 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.205 -16.151 -1.795 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.814 3.186 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.608 4.608 8 H 0.104 0.896 9 C 0.348 3.652 10 O -0.518 6.518 11 N -0.399 5.399 12 C 0.068 3.932 13 C -0.109 4.109 14 C -0.133 4.133 15 C -0.293 4.293 16 Cl 0.037 6.963 17 S 0.512 5.488 18 C -0.291 4.291 19 Cl 0.027 6.973 20 H 0.084 0.916 21 H 0.226 0.774 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.243 -16.917 -2.735 20.495 hybrid contribution -0.666 1.405 0.815 1.756 sum 10.577 -15.512 -1.920 18.873 Atomic orbital electron populations 1.70180 1.09467 1.28912 1.36454 1.26914 0.95460 1.04782 0.91233 0.85049 0.78996 0.75403 0.79116 1.18921 1.19720 1.17188 1.21390 0.95142 0.90218 1.54095 0.89615 1.18532 0.86694 0.83933 0.76049 1.90561 1.16131 1.87402 1.57682 1.45755 1.09030 1.04801 1.80296 1.19423 0.91863 0.81286 1.00663 1.18759 1.00495 0.99118 0.92557 1.19985 0.98902 0.93428 1.00994 1.25215 1.06005 1.00042 0.98002 1.98384 1.89077 1.49311 1.59570 1.84179 1.38840 1.21994 1.03817 1.25430 1.07065 1.02668 0.93906 1.98407 1.96891 1.70686 1.31353 0.91575 0.77429 0.92593 0.93363 0.81606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.15 11.85 21.83 0.26 -49.89 14 2 C 0.03 1.74 5.49 85.30 0.47 2.21 14 3 Si 0.99 40.91 29.56 68.60 2.03 42.93 14 4 H -0.26 -10.44 7.11 99.48 0.71 -9.74 14 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 14 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 14 7 C -0.57 -32.31 9.53 24.83 0.24 -32.08 14 8 H 0.09 4.37 7.85 -2.91 -0.02 4.35 14 9 C 0.54 31.31 7.74 86.36 0.67 31.98 14 10 O -0.63 -42.01 15.05 -4.33 -0.07 -42.08 14 11 N -0.74 -33.24 5.54 -471.13 -2.61 -35.86 14 12 C 0.19 7.47 5.50 85.63 0.47 7.94 14 13 C -0.09 -2.76 5.18 -20.88 -0.11 -2.87 14 14 C -0.10 -2.46 9.89 21.26 0.21 -2.25 14 15 C -0.15 -3.10 7.09 66.74 0.47 -2.63 14 16 Cl 0.01 0.14 29.28 -2.72 -0.08 0.06 14 17 S 0.25 4.93 23.34 -56.49 -1.32 3.61 14 18 C -0.15 -3.87 7.07 66.74 0.47 -3.40 14 19 Cl 0.00 -0.06 28.63 -2.72 -0.08 -0.14 14 20 H 0.27 15.17 8.29 -92.71 -0.77 14.40 14 21 H 0.39 15.63 8.44 -92.71 -0.78 14.85 14 22 H 0.06 2.23 8.07 -2.39 -0.02 2.21 14 23 H 0.05 2.03 7.99 -2.38 -0.02 2.01 14 24 H 0.17 3.70 8.06 -2.91 -0.02 3.68 14 Total: -1.00 -71.06 270.78 1.51 -69.54 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.48 Total: 12.89 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 2.89 Total: -1.08 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.35 Total: -85.75 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.07 Total: -42.08 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.32 Total: 3.61 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -0.16 Total: -0.07 kcal Total: -71.06 1.51 -69.54 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306216122.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.782 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds