Wall clock time and date at job start Tue Mar 31 2020 00:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46965 * 115.27624 * 3 2 1 5 5 C 1.36691 * 120.00169 * 97.02352 * 4 3 2 6 6 H 1.07997 * 120.00514 * 154.51916 * 5 4 3 7 7 C 1.39174 * 119.99824 * 334.52341 * 5 4 3 8 8 N 1.31283 * 119.99891 * 351.79245 * 7 5 4 9 9 Si 1.86802 * 119.99898 * 171.78895 * 7 5 4 10 10 H 1.48501 * 109.46993 * 90.00192 * 9 7 5 11 11 H 1.48503 * 109.47229 * 210.00220 * 9 7 5 12 12 H 1.48495 * 109.47187 * 330.00063 * 9 7 5 13 13 C 1.34778 * 120.00088 * 277.02371 * 4 3 2 14 14 O 1.21550 * 120.00082 * 184.86107 * 13 4 3 15 15 C 1.48161 * 119.99662 * 4.85868 * 13 4 3 16 16 N 1.33228 * 120.57776 * 6.96962 * 15 13 4 17 17 C 1.31510 * 120.73606 * 179.97438 * 16 15 13 18 18 C 1.50710 * 119.01248 * 179.97438 * 17 16 15 19 19 N 1.31931 * 121.97053 * 0.02562 * 17 16 15 20 20 C 1.32184 * 121.08222 * 359.97438 * 19 17 16 21 21 C 1.38907 * 119.13494 * 359.74687 * 20 19 17 22 22 Cl 1.73597 * 120.88913 * 180.27515 * 21 20 19 23 23 H 4.40648 * 5.51399 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.46783 * 355.28045 * 3 2 1 25 25 H 1.09000 * 109.47084 * 235.27479 * 3 2 1 26 26 H 0.97008 * 119.99511 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.46905 * 90.00223 * 18 17 16 28 28 H 1.08996 * 109.46847 * 210.00362 * 18 17 16 29 29 H 1.09004 * 109.46936 * 330.00779 * 18 17 16 30 30 H 1.07994 * 120.43346 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5906 -1.2490 5 6 3.4977 1.9078 -1.2864 6 1 4.2130 2.2499 -2.0197 7 6 2.9463 2.8079 -0.3795 8 7 1.9621 2.4311 0.4033 9 14 3.6067 4.5523 -0.2761 10 1 2.8557 5.4224 -1.2165 11 1 3.4424 5.0625 1.1088 12 1 5.0467 4.5587 -0.6384 13 6 3.2244 -0.1652 -2.3612 14 8 3.7115 0.2989 -3.3735 15 6 2.7301 -1.5619 -2.3498 16 7 2.0708 -2.0389 -1.2949 17 6 1.6302 -3.2779 -1.2817 18 6 0.8896 -3.7774 -0.0678 19 7 1.8180 -4.0970 -2.2987 20 6 2.4624 -3.7020 -3.3831 21 6 2.9423 -2.4000 -3.4480 22 17 3.7886 -1.8311 -4.8529 23 1 -1.0502 0.0001 0.0003 24 1 3.0098 -1.0234 0.0846 25 1 3.0091 0.5862 0.8446 26 1 1.5780 3.0585 1.0357 27 1 -0.1767 -3.5866 -0.1889 28 1 1.0566 -4.8486 0.0443 29 1 1.2533 -3.2581 0.8189 30 1 2.6106 -4.3814 -4.2094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490986490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:14 Heat of formation + Delta-G solvation = 85.225699 kcal Electronic energy + Delta-G solvation = -19495.694480 eV Core-core repulsion = 16319.962956 eV Total energy + Delta-G solvation = -3175.731524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32799 -40.20105 -37.75240 -37.06405 -35.13486 -33.93952 -33.70906 -32.95829 -29.26888 -28.39585 -27.52260 -25.73926 -24.06017 -21.59005 -19.67528 -19.39154 -18.43742 -18.08258 -17.32546 -16.83375 -16.63716 -15.94373 -15.79723 -15.57505 -14.78882 -14.53585 -14.28615 -13.89315 -13.74111 -13.38444 -13.20731 -12.86103 -12.76077 -12.66479 -12.31196 -12.22191 -12.09244 -11.90663 -11.23989 -11.09060 -10.65720 -10.40975 -10.19134 -9.93643 -9.78204 -8.36562 -6.04860 -0.67253 -0.24193 1.00044 1.38832 1.42521 1.54730 1.87024 2.10457 2.35196 2.50893 2.66089 2.76755 2.93820 3.07481 3.08923 3.58594 3.68609 4.04683 4.10003 4.40126 4.75381 4.76521 4.87756 4.95866 5.03969 5.34664 5.36870 5.55651 5.64512 5.97145 6.35285 6.86076 7.02056 7.22857 7.36350 7.84156 8.57233 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.007532 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.155486 B = 3716.742856 C = 4962.133573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.093 4.093 3 C 0.245 3.755 4 N -0.412 5.412 5 C -0.344 4.344 6 H 0.085 0.915 7 C 0.005 3.995 8 N -0.859 5.859 9 Si 0.996 3.004 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.267 1.267 13 C 0.458 3.542 14 O -0.589 6.589 15 C 0.145 3.855 16 N -0.486 5.486 17 C 0.304 3.696 18 C -0.078 4.078 19 N -0.506 5.506 20 C 0.176 3.824 21 C -0.131 4.131 22 Cl -0.017 7.017 23 H 0.222 0.778 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.278 0.722 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -11.461 0.492 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.095 4.095 3 C 0.123 3.877 4 N -0.128 5.128 5 C -0.472 4.472 6 H 0.103 0.897 7 C -0.201 4.201 8 N -0.494 5.494 9 Si 0.819 3.181 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.191 1.191 13 C 0.247 3.753 14 O -0.474 6.474 15 C -0.002 4.002 16 N -0.205 5.205 17 C 0.038 3.962 18 C -0.136 4.136 19 N -0.221 5.221 20 C 0.008 3.992 21 C -0.164 4.164 22 Cl 0.012 6.988 23 H 0.239 0.761 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.191 -11.379 0.890 11.622 hybrid contribution 0.526 1.515 -0.932 1.855 sum -1.666 -9.863 -0.042 10.003 Atomic orbital electron populations 1.24747 0.95972 1.07273 1.01878 1.22708 0.93999 0.94240 0.98542 1.18474 0.85610 0.96861 0.86772 1.43803 1.51919 1.09443 1.07595 1.19789 1.24631 0.83501 1.19274 0.89667 1.26269 0.94755 1.03656 0.95396 1.70041 1.21015 1.37298 1.21096 0.84897 0.78755 0.76438 0.78029 1.20411 1.19007 1.19092 1.18017 0.87494 0.85546 0.84221 1.90657 1.50725 1.73541 1.32473 1.21822 0.93477 0.94982 0.89951 1.69064 1.10418 1.15749 1.25224 1.24200 0.91558 0.85040 0.95446 1.20707 0.99561 1.02929 0.90413 1.68396 1.15341 1.37388 1.00960 1.23835 0.88146 0.90787 0.96471 1.22923 1.03666 0.97169 0.92676 1.98387 1.74870 1.89310 1.36249 0.76116 0.88904 0.89682 0.91155 0.88336 0.87361 0.89239 0.76567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.47 19.25 74.32 1.43 -10.04 16 2 C -0.09 -4.19 9.27 31.13 0.29 -3.90 16 3 C 0.24 11.34 4.75 84.57 0.40 11.74 16 4 N -0.41 -21.66 2.59 -648.39 -1.68 -23.34 16 5 C -0.34 -19.01 9.26 84.16 0.78 -18.23 16 6 H 0.09 4.95 7.41 -2.91 -0.02 4.93 16 7 C 0.01 0.25 5.13 85.00 0.44 0.69 16 8 N -0.86 -43.59 9.11 21.70 0.20 -43.39 16 9 Si 1.00 40.84 29.56 68.60 2.03 42.87 16 10 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 12 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 13 C 0.46 23.60 7.53 86.88 0.65 24.26 16 14 O -0.59 -32.79 13.90 -3.87 -0.05 -32.84 16 15 C 0.14 6.14 6.56 41.94 0.28 6.42 16 16 N -0.49 -18.40 4.81 -177.07 -0.85 -19.25 16 17 C 0.30 9.27 7.64 138.80 1.06 10.33 16 18 C -0.08 -1.68 10.31 71.24 0.73 -0.95 16 19 N -0.51 -14.34 10.31 -187.80 -1.94 -16.28 16 20 C 0.18 4.83 11.14 84.80 0.94 5.77 16 21 C -0.13 -4.68 6.40 22.80 0.15 -4.54 16 22 Cl -0.02 -0.61 26.27 -2.72 -0.07 -0.68 16 23 H 0.22 7.30 7.80 -4.41 -0.03 7.26 16 24 H 0.09 3.93 5.90 -2.39 -0.01 3.92 16 25 H 0.09 4.12 6.54 -2.39 -0.02 4.11 16 26 H 0.28 13.26 8.31 -92.70 -0.77 12.49 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.22 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -65.53 283.54 5.97 -59.56 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.18 Total: 11.81 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 7.15 Total: 21.54 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -4.27 Total: -102.26 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.05 Total: -32.84 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.07 Total: -0.68 kcal Total: -65.53 5.97 -59.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.789 kcal (2) G-P(sol) polarization free energy of solvation -65.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds