Wall clock time and date at job start Tue Mar 31 2020 01:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46833 * 299.99987 * 3 2 1 6 6 H 1.48503 * 109.47269 * 59.99727 * 3 2 1 7 7 C 1.38808 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00042 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00156 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47066 * 180.02562 * 10 9 7 12 12 O 1.21294 * 120.00235 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99339 * 180.02562 * 11 10 9 14 14 C 1.40126 * 119.99726 * 185.52884 * 13 11 10 15 15 C 1.38534 * 119.94115 * 24.84922 * 14 13 11 16 16 C 1.38190 * 120.27179 * 180.27362 * 15 14 13 17 17 C 1.38380 * 119.82392 * 359.64242 * 16 15 14 18 18 C 1.37836 * 120.11112 * 0.02562 * 17 16 15 19 19 C 1.38719 * 120.83477 * 0.29610 * 18 17 16 20 20 O 1.36200 * 111.28396 * 179.50243 * 19 18 17 21 21 C 1.43770 * 109.26193 * 18.60633 * 20 19 18 22 22 C 1.51657 * 132.11967 * 180.47077 * 18 17 16 23 23 H 0.96992 * 119.99940 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46617 * 60.00261 * 10 9 7 25 25 H 1.09002 * 109.46972 * 300.00603 * 10 9 7 26 26 H 0.96996 * 120.00443 * 5.52814 * 13 11 10 27 27 H 1.07997 * 119.86167 * 0.06754 * 15 14 13 28 28 H 1.07998 * 120.08933 * 179.61887 * 16 15 14 29 29 H 1.08004 * 119.94072 * 180.02562 * 17 16 15 30 30 H 1.08993 * 110.75044 * 90.79348 * 21 20 19 31 31 H 1.08998 * 110.74904 * 213.96677 * 21 20 19 32 32 H 1.09003 * 110.94203 * 46.01197 * 22 18 17 33 33 H 1.09007 * 110.97069 * 282.33889 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5159 -3.8915 0.0013 11 6 1.9874 -5.3028 0.0018 12 8 0.7910 -5.5024 0.0019 13 7 2.8442 -6.3431 0.0020 14 6 2.3572 -7.6518 -0.1146 15 6 1.1362 -7.8833 -0.7267 16 6 0.6467 -9.1706 -0.8403 17 6 1.3835 -10.2330 -0.3469 18 6 2.6020 -10.0083 0.2569 19 6 3.1054 -8.7221 0.3854 20 8 4.3115 -8.7241 1.0181 21 6 4.8745 -10.0458 0.9616 22 6 3.6210 -10.9480 0.8722 23 1 -0.4850 0.8400 -0.0004 24 1 3.1252 -3.7310 0.8909 25 1 3.1239 -3.7318 -0.8891 26 1 3.7979 -6.1860 0.0828 27 1 0.5629 -7.0539 -1.1138 28 1 -0.3083 -9.3471 -1.3126 29 1 1.0029 -11.2399 -0.4350 30 1 5.4982 -10.1623 0.0754 31 1 5.4453 -10.2613 1.8648 32 1 3.8029 -11.8045 0.2230 33 1 3.3035 -11.2731 1.8630 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600261725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:53 Heat of formation + Delta-G solvation = -59.840822 kcal Electronic energy + Delta-G solvation = -18403.848520 eV Core-core repulsion = 15327.410489 eV Total energy + Delta-G solvation = -3076.438031 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.28170 -40.91480 -38.24145 -35.99824 -34.60109 -33.14721 -31.50752 -30.32546 -29.24926 -27.67167 -24.55291 -23.40990 -23.18863 -21.32830 -19.96462 -18.83711 -18.38336 -17.85837 -16.95732 -16.92818 -16.88573 -16.47936 -16.20375 -15.76019 -15.03971 -14.55879 -14.45502 -14.33027 -13.91101 -13.82878 -13.51734 -13.18105 -12.92355 -12.76760 -12.71916 -12.60430 -12.31583 -11.86786 -11.73192 -11.51096 -11.17026 -10.85422 -10.32286 -9.39518 -8.88777 -8.68521 -8.36555 -6.14961 0.19897 0.29885 1.20560 1.41099 1.43393 1.48849 1.56510 2.08229 2.24940 2.26949 2.72193 2.97962 3.25055 3.49718 3.70309 3.73638 4.05295 4.20847 4.21979 4.26967 4.39278 4.42509 4.45054 4.62253 4.79247 4.91681 4.95352 5.09655 5.27182 5.41075 5.46286 5.52853 5.67218 6.18569 6.18629 6.28446 7.00412 7.05052 8.72947 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.039639 B = 0.003433 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.202098 B = 8153.335889 C = 8768.847736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.141 6.141 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.536 6.536 13 N -0.656 5.656 14 C 0.116 3.884 15 C -0.127 4.127 16 C -0.126 4.126 17 C -0.087 4.087 18 C -0.159 4.159 19 C 0.057 3.943 20 O -0.324 6.324 21 C 0.043 3.957 22 C -0.101 4.101 23 H 0.272 0.728 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.424 0.576 27 H 0.129 0.871 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.225 -23.653 -0.067 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.086 5.914 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.412 6.412 13 N -0.302 5.302 14 C 0.021 3.979 15 C -0.147 4.147 16 C -0.145 4.145 17 C -0.106 4.106 18 C -0.160 4.160 19 C 0.010 3.990 20 O -0.239 6.239 21 C -0.031 4.031 22 C -0.137 4.137 23 H 0.081 0.919 24 H 0.130 0.870 25 H 0.133 0.867 26 H 0.262 0.738 27 H 0.147 0.853 28 H 0.168 0.832 29 H 0.177 0.823 30 H 0.107 0.893 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.258 -23.650 0.039 25.397 hybrid contribution 1.811 1.540 0.013 2.378 sum 11.069 -22.109 0.052 24.725 Atomic orbital electron populations 1.70179 1.07947 1.28630 1.47927 1.26132 0.95985 1.03312 0.93658 0.84888 0.78579 0.76255 0.78109 1.18079 1.19846 1.19916 1.23244 0.95419 0.91926 1.58987 0.89854 1.85536 1.09794 0.98993 1.97067 1.23364 1.04076 0.93388 1.07199 1.20279 0.86186 0.86553 0.74794 1.90655 1.16873 1.85548 1.48167 1.43310 1.11276 1.03390 1.72186 1.17371 0.96493 0.82171 1.01869 1.21254 0.94781 0.99370 0.99304 1.21255 1.01083 0.90840 1.01295 1.20657 0.92471 1.00457 0.97004 1.21074 0.98136 0.93568 1.03267 1.19301 0.88731 0.94035 0.96958 1.86809 1.30552 1.35060 1.71444 1.24182 0.95940 0.77679 1.05292 1.21894 0.91065 0.98035 1.02753 0.91921 0.86957 0.86696 0.73834 0.85333 0.83172 0.82285 0.89275 0.85294 0.86286 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.42 9.50 67.96 0.65 -30.77 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.14 -7.86 20.57 -56.49 -1.16 -9.02 16 10 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 11 C 0.53 20.97 7.65 87.66 0.67 21.64 16 12 O -0.54 -25.09 13.02 -3.07 -0.04 -25.13 16 13 N -0.66 -20.52 5.37 -302.87 -1.63 -22.15 16 14 C 0.12 3.58 6.46 38.27 0.25 3.83 16 15 C -0.13 -4.00 8.69 22.33 0.19 -3.80 16 16 C -0.13 -2.99 10.06 22.29 0.22 -2.77 16 17 C -0.09 -1.66 10.03 22.21 0.22 -1.43 16 18 C -0.16 -3.19 6.27 -19.54 -0.12 -3.31 16 19 C 0.06 1.47 6.93 22.77 0.16 1.63 16 20 O -0.32 -7.36 11.11 -95.84 -1.06 -8.42 16 21 C 0.04 0.53 8.01 72.56 0.58 1.11 16 22 C -0.10 -1.15 7.12 30.73 0.22 -0.93 16 23 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 24 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 25 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 26 H 0.42 10.69 8.79 -92.71 -0.81 9.87 16 27 H 0.13 4.79 5.76 -2.91 -0.02 4.77 16 28 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -77.23 302.17 2.70 -74.53 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.33 Total: 18.44 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.94 Total: -18.36 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -1.34 Total: -77.82 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.10 Total: -33.55 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -77.23 2.70 -74.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600261725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.690 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds