Wall clock time and date at job start Tue Mar 31 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47098 * 2 1 4 4 C 1.37101 * 120.00499 * 272.16669 * 3 2 1 5 5 H 1.07994 * 119.99881 * 139.56595 * 4 3 2 6 6 C 1.38951 * 119.99502 * 319.56222 * 4 3 2 7 7 N 1.31404 * 120.00154 * 342.40297 * 6 4 3 8 8 Si 1.86797 * 119.99646 * 162.39846 * 6 4 3 9 9 H 1.48501 * 109.47122 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47265 * 120.00206 * 8 6 4 11 11 H 1.48509 * 109.47185 * 240.00499 * 8 6 4 12 12 C 1.34778 * 119.99896 * 92.16872 * 3 2 1 13 13 O 1.21292 * 120.00028 * 179.72586 * 12 3 2 14 14 C 1.50701 * 120.00106 * 359.97438 * 12 3 2 15 15 C 1.52998 * 109.47612 * 174.32114 * 14 12 3 16 16 C 1.53000 * 115.54878 * 294.31371 * 15 14 12 17 17 C 1.53000 * 117.49699 * 79.97850 * 15 14 12 18 18 C 1.52994 * 117.49989 * 148.63668 * 15 14 12 19 19 Cl 1.80297 * 117.50106 * 0.02562 * 18 15 14 20 20 Cl 1.80303 * 117.49826 * 145.02463 * 18 15 14 21 21 H 1.09000 * 109.47370 * 59.99496 * 1 2 3 22 22 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47172 * 299.99718 * 1 2 3 24 24 H 1.09005 * 109.46437 * 240.00360 * 2 1 3 25 25 H 1.08994 * 109.47018 * 120.00263 * 2 1 3 26 26 H 0.97009 * 120.00216 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47369 * 294.32353 * 14 12 3 28 28 H 1.09005 * 109.47316 * 54.32098 * 14 12 3 29 29 H 1.08996 * 109.47428 * 57.77154 * 16 15 14 30 30 H 1.08996 * 109.47023 * 177.77362 * 16 15 14 31 31 H 1.09005 * 109.46792 * 297.76901 * 16 15 14 32 32 H 1.08997 * 117.49880 * 214.98057 * 17 15 14 33 33 H 1.09000 * 117.49886 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2046 2.0425 -1.1864 5 1 1.9246 3.0818 -1.2750 6 6 2.7536 1.3756 -2.2748 7 7 3.4056 0.2490 -2.0944 8 14 2.5647 2.0804 -3.9943 9 1 1.7946 3.3484 -3.9277 10 1 3.9072 2.3468 -4.5704 11 1 1.8423 1.1066 -4.8519 12 6 2.2846 2.0018 1.1664 13 8 2.6936 3.1436 1.1662 14 6 2.0795 1.2751 2.4706 15 6 2.5847 2.1443 3.6238 16 6 4.0921 2.4058 3.6417 17 6 1.6675 3.2645 4.1186 18 6 1.8747 2.0112 4.9725 19 17 0.5071 0.8414 5.0814 20 17 2.8783 2.1750 6.4614 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 3.7886 -0.2168 -2.8542 27 1 1.0180 1.0692 2.6088 28 1 2.6325 0.3359 2.4542 29 1 4.3899 2.8794 2.7063 30 1 4.3369 3.0633 4.4758 31 1 4.6234 1.4609 3.7559 32 1 2.1379 4.1875 4.4572 33 1 0.7043 3.3824 3.6221 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822747686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:48 Heat of formation + Delta-G solvation = -39.068147 kcal Electronic energy + Delta-G solvation = -18204.853219 eV Core-core repulsion = 15124.839403 eV Total energy + Delta-G solvation = -3080.013816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 279.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82410 -39.09713 -37.02982 -36.99459 -36.43860 -33.97377 -31.11597 -30.65615 -29.17242 -26.59830 -23.88420 -23.33386 -21.57839 -19.71409 -18.64121 -17.77478 -17.26609 -16.87523 -16.32241 -15.80003 -15.44837 -14.76429 -14.44702 -14.33085 -13.92914 -13.88900 -13.51673 -13.46098 -13.10592 -12.90058 -12.71509 -12.61739 -12.51829 -12.50433 -12.21022 -12.17438 -12.04101 -11.75003 -11.67799 -11.01962 -10.86450 -10.74328 -10.15204 -9.32869 -8.26882 -6.05130 0.12880 1.19785 1.38412 1.43474 1.56016 2.09157 2.16651 2.35429 3.02746 3.07500 3.31866 3.38549 3.80207 3.99243 4.21882 4.35649 4.57349 4.63480 4.66444 4.70012 4.79469 4.87362 4.91052 4.96532 5.09199 5.33001 5.36495 5.49443 5.62776 6.29395 6.61087 7.25083 7.54171 8.14658 8.74561 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.005045 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.656054 B = 5548.311467 C = 6016.920318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.092 3.908 3 N -0.457 5.457 4 C -0.332 4.332 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.893 5.893 8 Si 0.977 3.023 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.459 3.541 13 O -0.609 6.609 14 C -0.095 4.095 15 C -0.068 4.068 16 C -0.115 4.115 17 C -0.123 4.123 18 C 0.013 3.987 19 Cl -0.097 7.097 20 Cl -0.093 7.093 21 H 0.040 0.960 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.271 0.729 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 -1.464 12.202 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 N -0.177 5.177 4 C -0.460 4.460 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.531 5.531 8 Si 0.801 3.199 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.248 3.752 13 O -0.494 6.494 14 C -0.135 4.135 15 C -0.070 4.070 16 C -0.172 4.172 17 C -0.161 4.161 18 C -0.038 4.038 19 Cl -0.070 7.070 20 Cl -0.066 7.066 21 H 0.059 0.941 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.086 -1.154 12.206 12.924 hybrid contribution 0.032 0.103 -0.845 0.852 sum -4.054 -1.050 11.361 12.109 Atomic orbital electron populations 1.22043 0.95614 1.02155 1.01128 1.21666 0.94063 0.83983 1.03408 1.43712 1.56714 1.12965 1.04276 1.19324 1.41264 0.96712 0.88701 0.91991 1.26073 0.93657 0.96832 1.03315 1.69942 1.32444 1.18258 1.32492 0.85128 0.78001 0.78615 0.78122 1.19536 1.20697 1.19175 1.20869 0.80392 0.87826 0.86083 1.90477 1.50596 1.20410 1.87943 1.21208 1.03506 0.98590 0.90170 1.21894 0.96638 0.99222 0.89237 1.21383 0.90474 1.02496 1.02831 1.24043 1.02478 0.92819 0.96718 1.27184 0.91640 0.99092 0.85910 1.98728 1.47496 1.62800 1.97967 1.98722 1.70341 1.97501 1.40001 0.94086 0.90097 0.92992 0.89838 0.91291 0.91935 0.87933 0.88327 0.92350 0.90437 0.91222 0.85246 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 10.23 71.98 0.74 -4.42 16 2 C 0.09 3.82 5.60 86.38 0.48 4.31 16 3 N -0.46 -22.45 2.50 -635.55 -1.59 -24.04 16 4 C -0.33 -18.26 8.86 84.04 0.74 -17.51 16 5 H 0.06 3.65 7.80 -2.91 -0.02 3.62 16 6 C 0.00 0.17 5.05 84.93 0.43 0.60 16 7 N -0.89 -47.58 11.40 21.66 0.25 -47.34 16 8 Si 0.98 41.93 29.59 68.60 2.03 43.95 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 12 C 0.46 21.15 7.43 87.66 0.65 21.80 16 13 O -0.61 -31.88 14.47 -3.07 -0.04 -31.93 16 14 C -0.09 -3.24 3.92 29.85 0.12 -3.12 16 15 C -0.07 -2.06 1.59 -52.18 -0.08 -2.14 16 16 C -0.11 -3.49 8.98 71.98 0.65 -2.85 16 17 C -0.12 -3.30 9.52 30.62 0.29 -3.01 16 18 C 0.01 0.33 3.61 30.61 0.11 0.44 16 19 Cl -0.10 -2.37 27.55 -2.72 -0.07 -2.45 16 20 Cl -0.09 -2.17 27.73 -2.72 -0.08 -2.24 16 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.05 1.63 7.67 -2.39 -0.02 1.61 16 24 H 0.08 3.93 5.57 -2.38 -0.01 3.92 16 25 H 0.07 2.52 6.20 -2.39 -0.01 2.51 16 26 H 0.27 13.53 8.31 -92.70 -0.77 12.76 16 27 H 0.10 3.17 6.30 -2.39 -0.02 3.16 16 28 H 0.10 3.21 7.10 -2.38 -0.02 3.20 16 29 H 0.06 2.19 6.68 -2.39 -0.02 2.17 16 30 H 0.08 2.02 7.12 -2.39 -0.02 2.00 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -61.12 302.81 5.74 -55.38 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.12 Total: 14.57 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.13 Total: -5.90 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -1.34 Total: -71.38 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.04 Total: -31.93 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 17 Polarization: -4.54 SS G_CDS: -0.15 Total: -4.69 kcal Total: -61.12 5.74 -55.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822747686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.312 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds