Wall clock time and date at job start Tue Mar 31 2020 01:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.50706 * 109.47123 * 119.99580 * 2 1 3 5 5 H 1.08004 * 119.99669 * 119.99886 * 4 2 1 6 6 C 1.37878 * 120.00195 * 299.99975 * 4 2 1 7 7 N 1.31507 * 119.99913 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99862 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.46781 * 89.99832 * 8 6 4 10 10 H 1.48500 * 109.46841 * 209.99876 * 8 6 4 11 11 H 1.48494 * 109.47148 * 330.00073 * 8 6 4 12 12 N 1.46496 * 109.47265 * 239.99657 * 2 1 3 13 13 C 1.34777 * 119.99867 * 84.99704 * 12 2 1 14 14 O 1.21279 * 120.00166 * 0.02562 * 13 12 2 15 15 C 1.50706 * 120.00142 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.46957 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.46626 * 180.02562 * 16 15 13 18 18 H 1.09000 * 115.55103 * 330.66601 * 17 16 15 19 19 C 1.53000 * 117.49803 * 116.37644 * 17 16 15 20 20 C 1.52999 * 60.00150 * 107.48441 * 19 17 16 21 21 Cl 1.80300 * 117.50166 * 252.51010 * 20 19 17 22 22 Cl 1.80301 * 117.49839 * 107.48446 * 20 19 17 23 23 H 1.09001 * 109.47093 * 60.00104 * 1 2 3 24 24 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47121 * 300.00317 * 1 2 3 26 26 H 0.97005 * 120.00059 * 180.02562 * 7 6 4 27 27 H 0.96999 * 120.00085 * 265.00310 * 12 2 1 28 28 H 1.08993 * 109.46700 * 59.99973 * 15 13 12 29 29 H 1.09000 * 109.46974 * 300.00347 * 15 13 12 30 30 H 1.08993 * 109.47839 * 60.00178 * 16 15 13 31 31 H 1.09000 * 109.47160 * 299.99740 * 16 15 13 32 32 H 1.08999 * 117.49899 * 214.97831 * 19 17 16 33 33 H 1.09000 * 117.49743 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9759 1.9953 3.9068 11 1 0.8469 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.8589 1.1585 -2.4115 15 6 2.6488 -0.7289 -3.5877 16 6 2.7009 0.2544 -4.7587 17 6 3.2098 -0.4673 -6.0083 18 1 3.8887 -1.3005 -5.8263 19 6 2.2533 -0.5814 -7.1970 20 6 3.4457 0.3750 -7.2636 21 17 3.1027 2.1419 -7.1572 22 17 4.8249 -0.0870 -8.3290 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9026 -0.5282 4.4376 27 1 2.2490 -1.6318 -1.1525 28 1 1.9760 -1.5507 -3.8324 29 1 3.6480 -1.1215 -3.3986 30 1 3.3740 1.0759 -4.5138 31 1 1.7020 0.6472 -4.9480 32 1 2.3026 -1.4899 -7.7972 33 1 1.2617 -0.1420 -7.0890 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824688792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:11 Heat of formation + Delta-G solvation = -56.813968 kcal Electronic energy + Delta-G solvation = -17074.021864 eV Core-core repulsion = 13993.238531 eV Total energy + Delta-G solvation = -3080.783333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 279.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68211 -39.11835 -37.00111 -36.92228 -36.52513 -34.38069 -33.22416 -31.43429 -27.23190 -26.18404 -23.27327 -22.77657 -21.50870 -21.12194 -19.03746 -17.69179 -17.52729 -17.17432 -16.43148 -16.20359 -15.70783 -15.07934 -14.79740 -14.44837 -14.12967 -14.06158 -13.80888 -13.41709 -13.24970 -12.93619 -12.81923 -12.74808 -12.36938 -12.14733 -12.13108 -12.08707 -11.86052 -11.61684 -11.26573 -11.14181 -10.87162 -10.80757 -10.54765 -9.81655 -8.38042 -6.43447 0.24279 1.22685 1.26930 1.35585 1.44798 1.85649 2.24516 2.26227 2.55707 2.98518 3.18494 3.42457 3.81873 4.07309 4.26178 4.37492 4.48334 4.51598 4.59649 4.71447 4.72420 4.80377 4.93838 5.03833 5.10936 5.32669 5.35705 5.45780 5.70391 6.15470 6.59078 6.94835 7.20727 7.54131 8.77198 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.039514 B = 0.003221 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.445392 B = 8691.987321 C = 8988.741104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.240 3.760 3 H 0.018 0.982 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.938 3.062 9 H -0.259 1.259 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.703 5.703 13 C 0.496 3.504 14 O -0.600 6.600 15 C -0.124 4.124 16 C -0.074 4.074 17 C -0.105 4.105 18 H 0.152 0.848 19 C -0.122 4.122 20 C -0.018 4.018 21 Cl -0.113 7.113 22 Cl -0.105 7.105 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.270 0.730 27 H 0.409 0.591 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.687 -2.691 -23.985 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.134 3.866 3 H 0.036 0.964 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.171 4.171 7 N -0.573 5.573 8 Si 0.766 3.234 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.353 5.353 13 C 0.285 3.715 14 O -0.482 6.482 15 C -0.164 4.164 16 C -0.112 4.112 17 C -0.124 4.124 18 H 0.170 0.830 19 C -0.160 4.160 20 C -0.069 4.069 21 Cl -0.086 7.086 22 Cl -0.078 7.078 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.244 0.756 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.162 0.838 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.574 -1.772 -23.895 23.968 hybrid contribution -0.055 0.632 0.657 0.913 sum 0.519 -1.140 -23.239 23.273 Atomic orbital electron populations 1.22333 0.97907 1.01694 0.99305 1.18720 0.91171 0.93077 0.83592 0.96376 1.21301 1.32247 1.13563 0.89957 0.92333 1.25552 0.96872 0.99261 0.95443 1.69972 1.46752 1.41926 0.98648 0.86014 0.79869 0.80449 0.77074 1.18502 1.22064 1.18952 1.46067 1.65507 1.14473 1.09220 1.21552 0.77084 0.87132 0.85779 1.90646 1.53120 1.18411 1.86063 1.21644 1.05092 0.99565 0.90054 1.20910 1.01975 0.97076 0.91259 1.23354 1.01609 0.98999 0.88410 0.83019 1.24253 0.94027 0.99056 0.98634 1.27075 0.95475 0.82308 1.02040 1.98762 1.94636 1.17142 1.98107 1.98746 1.48855 1.91227 1.68949 0.93578 0.91482 0.94379 0.92081 0.75552 0.85509 0.86450 0.92027 0.91253 0.83817 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.58 8.96 71.98 0.65 -5.94 16 2 C 0.24 11.17 2.15 44.25 0.10 11.26 16 3 H 0.02 0.97 6.64 -2.39 -0.02 0.95 16 4 C -0.53 -28.64 9.31 25.60 0.24 -28.40 16 5 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 6 C 0.03 1.59 5.45 84.66 0.46 2.06 16 7 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 8 Si 0.94 44.72 24.37 68.60 1.67 46.39 16 9 H -0.26 -11.57 6.87 99.48 0.68 -10.89 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.26 -12.63 6.53 99.48 0.65 -11.98 16 12 N -0.70 -25.80 5.07 -446.10 -2.26 -28.06 16 13 C 0.50 16.66 7.79 87.66 0.68 17.34 16 14 O -0.60 -25.71 15.64 -3.03 -0.05 -25.76 16 15 C -0.12 -2.44 5.66 29.85 0.17 -2.27 16 16 C -0.07 -1.48 3.88 30.60 0.12 -1.37 16 17 C -0.10 -1.40 5.58 -10.79 -0.06 -1.46 16 18 H 0.15 1.42 8.07 -2.39 -0.02 1.40 16 19 C -0.12 -1.29 9.86 30.59 0.30 -0.99 16 20 C -0.02 -0.29 3.62 30.59 0.11 -0.17 16 21 Cl -0.11 -2.40 28.23 -2.72 -0.08 -2.48 16 22 Cl -0.10 -1.74 29.29 -2.72 -0.08 -1.82 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.04 1.68 3.27 -2.39 -0.01 1.67 16 26 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 27 H 0.41 12.66 8.54 -92.71 -0.79 11.87 16 28 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.55 7.98 -2.39 -0.02 1.53 16 31 H 0.07 1.55 7.83 -2.39 -0.02 1.53 16 32 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.13 1.28 8.03 -2.39 -0.02 1.26 16 Total: -1.00 -68.92 306.68 2.53 -66.40 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.26 Total: 10.64 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 2.76 Total: -9.95 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.96 Total: -83.42 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.67 Total: 46.39 kcal Atomic # 17 Polarization: -4.14 SS G_CDS: -0.16 Total: -4.30 kcal Total: -68.92 2.53 -66.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.582 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds