Wall clock time and date at job start Tue Mar 31 2020 00:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38714 * 119.70040 * 2 1 4 4 C 1.37728 * 119.98154 * 180.02562 * 3 2 1 5 5 C 1.39256 * 120.20547 * 0.02562 * 4 3 2 6 6 S 1.76192 * 131.17135 * 179.97438 * 5 4 3 7 7 C 1.75801 * 90.45531 * 180.02562 * 6 5 4 8 8 S 1.76206 * 124.82043 * 180.02562 * 7 6 5 9 9 C 1.81000 * 99.99840 * 359.97438 * 8 7 6 10 10 C 1.50699 * 109.47139 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99579 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00436 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99565 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00145 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47418 * 59.99558 * 14 12 10 16 16 H 1.48496 * 109.47067 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47040 * 299.99946 * 14 12 10 18 18 N 1.28979 * 110.35624 * 0.02562 * 7 6 5 19 19 C 1.34784 * 117.86457 * 359.97438 * 18 7 6 20 20 C 1.37196 * 119.70640 * 180.02562 * 2 1 3 21 21 C 1.50703 * 119.78252 * 359.97438 * 20 2 1 22 22 H 1.08999 * 109.47018 * 269.97633 * 1 2 3 23 23 H 1.08999 * 109.47117 * 29.98089 * 1 2 3 24 24 H 1.09002 * 109.46938 * 149.97466 * 1 2 3 25 25 H 1.08002 * 120.00714 * 0.02562 * 3 2 1 26 26 H 1.07996 * 119.90057 * 180.02562 * 4 3 2 27 27 H 1.08995 * 109.47500 * 299.99729 * 9 8 7 28 28 H 1.08996 * 109.47285 * 60.00249 * 9 8 7 29 29 H 0.96999 * 119.99935 * 180.02562 * 13 12 10 30 30 H 1.08994 * 109.47338 * 269.98227 * 21 20 2 31 31 H 1.08998 * 109.46981 * 29.98655 * 21 20 2 32 32 H 1.08998 * 109.46992 * 149.98319 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2049 0.0000 4 6 3.5715 1.2117 -0.0005 5 6 4.2780 0.0116 -0.0016 6 16 6.0094 -0.3150 -0.0031 7 6 5.6972 -2.0451 -0.0044 8 16 6.9421 -3.2921 -0.0057 9 6 8.4256 -2.2552 -0.0061 10 6 9.6513 -3.1320 -0.0066 11 1 9.5463 -4.2069 -0.0071 12 6 10.9067 -2.5620 -0.0063 13 7 11.0345 -1.2531 -0.0052 14 14 12.4260 -3.6488 -0.0077 15 1 12.4210 -4.5052 -1.2209 16 1 13.6431 -2.7982 -0.0078 17 1 12.4215 -4.5072 1.2041 18 7 4.4275 -2.2719 -0.0043 19 6 3.5978 -1.2096 -0.0027 20 6 2.1869 -1.1917 -0.0005 21 6 1.4217 -2.4900 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6495 2.1375 0.0004 26 1 4.1053 2.1505 -0.0001 27 1 8.4286 -1.6255 -0.8957 28 1 8.4296 -1.6264 0.8842 29 1 11.9177 -0.8521 -0.0054 30 1 1.2379 -2.8034 1.0271 31 1 0.4702 -2.3510 -0.5137 32 1 2.0037 -3.2547 -0.5150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865871121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:34 Heat of formation + Delta-G solvation = 33.241265 kcal Electronic energy + Delta-G solvation = -16085.746952 eV Core-core repulsion = 13456.098135 eV Total energy + Delta-G solvation = -2629.648818 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 279.045 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16517 -36.93525 -33.37041 -33.26552 -31.02304 -28.90364 -27.44067 -26.48054 -24.75864 -23.24648 -21.51519 -20.56283 -17.92157 -16.93951 -16.37949 -16.00673 -15.31689 -14.89348 -14.77938 -14.34595 -13.75660 -13.36842 -13.28256 -12.80726 -12.68090 -12.56117 -12.51693 -12.26951 -11.72086 -11.56301 -11.43654 -11.02535 -10.96320 -10.61712 -10.57030 -9.83800 -9.62834 -9.58693 -9.03423 -8.95158 -8.67527 -7.79392 -6.95457 -6.35528 -4.43942 0.58677 1.20859 1.40850 1.82282 2.03253 2.48797 3.20084 3.24038 3.26615 3.41974 3.74541 4.22037 4.43128 4.72433 4.84871 5.01817 5.02785 5.28226 5.32335 5.39970 5.46098 5.66398 5.71343 5.81000 5.85530 6.17675 6.25353 6.34610 6.55252 6.74777 6.79735 6.82794 7.53368 7.73467 7.82569 8.56540 9.21279 10.75300 Molecular weight = 279.04amu Principal moments of inertia in cm(-1) A = 0.043545 B = 0.003953 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.859231 B = 7082.199088 C = 7699.310849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.113 4.113 4 C -0.069 4.069 5 C -0.190 4.190 6 S 0.074 5.926 7 C 0.110 3.890 8 S -0.012 6.012 9 C 0.045 3.955 10 C -0.525 4.525 11 H 0.071 0.929 12 C 0.072 3.928 13 N -0.884 5.884 14 Si 0.911 3.089 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.272 1.272 18 N -0.473 5.473 19 C 0.107 3.893 20 C -0.044 4.044 21 C -0.111 4.111 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.270 0.730 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.920 4.269 0.016 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.092 4.092 5 C -0.311 4.311 6 S 0.327 5.673 7 C -0.281 4.281 8 S 0.224 5.776 9 C -0.103 4.103 10 C -0.565 4.565 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.521 5.521 14 Si 0.737 3.263 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.197 1.197 18 N -0.192 5.192 19 C -0.017 4.017 20 C -0.048 4.048 21 C -0.168 4.168 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.996 3.181 0.013 16.309 hybrid contribution 0.213 1.049 0.024 1.071 sum -15.783 4.230 0.037 16.340 Atomic orbital electron populations 1.20837 0.90753 1.02910 1.02397 1.19436 0.96069 0.91982 1.01088 1.20852 0.93143 0.97543 1.01979 1.20243 0.93727 0.95233 1.00012 1.23773 0.97397 0.98540 1.11373 1.85575 1.01269 1.04146 1.76350 1.29761 0.98584 0.98873 1.00855 1.85780 0.95853 1.08865 1.87139 1.21656 0.89797 0.96814 1.02049 1.20449 0.88408 0.93023 1.54579 0.91045 1.24946 0.99037 0.95367 0.94021 1.69934 1.24624 1.09513 1.47986 0.86334 0.80797 0.79988 0.79150 1.19690 1.20865 1.19686 1.66605 1.00624 1.31233 1.20730 1.19087 0.94216 0.86028 1.02395 1.19237 0.89385 0.95700 1.00491 1.20781 0.99220 0.94313 1.02448 0.91094 0.91537 0.90994 0.85248 0.85583 0.92885 0.92885 0.92037 0.91119 0.91284 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.57 36.00 0.34 -0.58 16 2 C -0.08 -1.00 5.86 -104.83 -0.61 -1.61 16 3 C -0.11 -1.33 9.69 -39.59 -0.38 -1.71 16 4 C -0.07 -0.97 10.06 -39.39 -0.40 -1.36 16 5 C -0.19 -3.29 6.52 -38.62 -0.25 -3.54 16 6 S 0.07 1.42 21.77 -107.50 -2.34 -0.92 16 7 C 0.11 2.28 7.73 51.56 0.40 2.68 16 8 S -0.01 -0.25 22.23 -107.50 -2.39 -2.64 16 9 C 0.05 1.11 4.40 36.01 0.16 1.27 16 10 C -0.52 -13.91 9.13 -34.44 -0.31 -14.23 16 11 H 0.07 1.85 7.71 -52.48 -0.40 1.44 16 12 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 13 N -0.88 -24.50 13.29 55.43 0.74 -23.76 16 14 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 N -0.47 -9.50 10.31 -10.59 -0.11 -9.61 16 19 C 0.11 1.92 6.71 -84.90 -0.57 1.35 16 20 C -0.04 -0.64 5.93 -103.91 -0.62 -1.26 16 21 C -0.11 -1.35 9.52 36.01 0.34 -1.01 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 24 H 0.07 0.54 5.87 -51.93 -0.30 0.23 16 25 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 27 H 0.05 1.36 7.98 -51.92 -0.41 0.94 16 28 H 0.05 1.36 7.98 -51.92 -0.41 0.94 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.65 5.87 -51.93 -0.30 0.34 16 32 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -28.70 301.15 -10.09 -38.78 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -3.50 Total: -3.50 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -2.00 Total: -18.19 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.63 Total: -33.37 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -4.73 Total: -3.56 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.70 -10.09 -38.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865871121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.023 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds