Wall clock time and date at job start Tue Mar 31 2020 01:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 N 1.46494 * 109.47488 * 239.99349 * 2 1 3 5 5 C 1.34782 * 120.00052 * 85.00153 * 4 2 1 6 6 O 1.21687 * 119.99794 * 359.97438 * 5 4 2 7 7 C 1.46374 * 120.00057 * 180.02562 * 5 4 2 8 8 H 1.08002 * 119.99815 * 353.93257 * 7 5 4 9 9 C 1.40048 * 119.99769 * 173.93991 * 7 5 4 10 10 N 1.30670 * 120.00098 * 6.14731 * 9 7 5 11 11 Si 1.86800 * 119.99627 * 186.14736 * 9 7 5 12 12 H 1.48504 * 109.47200 * 94.98515 * 11 9 7 13 13 H 1.48507 * 109.47146 * 214.98411 * 11 9 7 14 14 H 1.48502 * 109.47479 * 334.98065 * 11 9 7 15 15 C 1.50698 * 109.46905 * 119.99343 * 2 1 3 16 16 N 1.29949 * 126.28821 * 74.68766 * 15 2 1 17 17 O 1.21302 * 110.24984 * 179.84293 * 16 15 2 18 18 C 1.33635 * 109.81151 * 0.42753 * 17 16 15 19 19 C 1.50711 * 126.54957 * 179.71554 * 18 17 16 20 20 F 1.39903 * 109.46999 * 270.02526 * 19 18 17 21 21 F 1.39904 * 109.46953 * 30.02599 * 19 18 17 22 22 F 1.39896 * 109.46982 * 150.02266 * 19 18 17 23 23 N 1.31122 * 106.89983 * 359.73892 * 18 17 16 24 24 H 1.08998 * 109.47398 * 300.00422 * 1 2 3 25 25 H 1.08997 * 109.46499 * 60.00893 * 1 2 3 26 26 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00593 * 265.00017 * 4 2 1 28 28 H 0.96998 * 119.99856 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3571 6 8 1.8574 1.1621 -2.4120 7 6 2.6347 -0.7087 -3.5523 8 1 2.9836 -1.7284 -3.4823 9 6 2.6488 -0.0468 -4.7864 10 7 2.3414 1.2216 -4.8510 11 14 3.1070 -0.9772 -6.3400 12 1 1.8727 -1.4570 -7.0119 13 1 3.8505 -0.0752 -7.2560 14 1 3.9623 -2.1389 -5.9873 15 6 2.0323 -0.7103 1.2305 16 7 2.0278 -1.9938 1.4334 17 8 2.5027 -2.2488 2.5201 18 6 2.8576 -1.1172 3.1361 19 6 3.4784 -0.9967 4.5041 20 9 2.4690 -0.8759 5.4652 21 9 4.2429 -2.1376 4.7714 22 9 4.2996 0.1351 4.5454 23 7 2.5621 -0.1318 2.3231 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 2.2492 -1.6318 -1.1524 28 1 2.3515 1.6801 -5.7057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910759139.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:28 Heat of formation + Delta-G solvation = -111.301322 kcal Electronic energy + Delta-G solvation = -21363.946056 eV Core-core repulsion = 17197.126575 eV Total energy + Delta-G solvation = -4166.819480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.062 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.79240 -48.31956 -48.28107 -46.11557 -38.02401 -36.40468 -34.53814 -32.79417 -32.26877 -29.81299 -27.85525 -26.27132 -25.13607 -23.68597 -21.80063 -19.92648 -19.41122 -19.07247 -18.97138 -18.25166 -17.71214 -17.03908 -15.49481 -15.19372 -15.10686 -15.04339 -14.66497 -14.38411 -14.37526 -14.36188 -13.75060 -13.55027 -13.51351 -12.86572 -12.53910 -12.32853 -11.83459 -11.79857 -11.62989 -11.21221 -11.11669 -10.92487 -10.60874 -10.47192 -10.28301 -8.94495 -7.85208 -7.78009 -6.30602 -4.75483 0.40753 1.13721 1.78077 2.43377 2.76378 3.09060 3.16666 3.20202 3.59040 3.61921 3.78058 3.95519 4.13111 4.46390 4.74051 5.09714 5.31961 5.45089 5.67445 5.81415 5.98465 6.25940 6.55925 7.34474 7.58338 7.72248 7.85856 8.19358 8.91950 9.30916 10.44889 10.63147 Molecular weight = 279.06amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.003775 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.779582 B = 7416.304999 C = 7610.253878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.238 3.762 3 H 0.114 0.886 4 N -0.759 5.759 5 C 0.557 3.443 6 O -0.575 6.575 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.088 3.912 10 N -0.764 5.764 11 Si 0.910 3.090 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.264 1.264 15 C 0.189 3.811 16 N -0.345 5.345 17 O 0.123 5.877 18 C 0.068 3.932 19 C 0.591 3.409 20 F -0.150 7.150 21 F -0.151 7.151 22 F -0.140 7.140 23 N -0.405 5.405 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.385 0.615 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 -6.166 17.090 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.130 3.870 3 H 0.131 0.869 4 N -0.416 5.416 5 C 0.362 3.638 6 O -0.457 6.457 7 C -0.579 4.579 8 H 0.088 0.912 9 C -0.133 4.133 10 N -0.392 5.392 11 Si 0.735 3.265 12 H -0.197 1.197 13 H -0.203 1.203 14 H -0.188 1.188 15 C -0.084 4.084 16 N -0.043 5.043 17 O 0.056 5.944 18 C -0.156 4.156 19 C 0.534 3.466 20 F -0.131 7.131 21 F -0.132 7.132 22 F -0.121 7.121 23 N -0.140 5.140 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.217 0.783 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.366 -5.241 16.189 17.021 hybrid contribution 0.499 -0.997 -0.324 1.161 sum 0.866 -6.238 15.865 17.069 Atomic orbital electron populations 1.22194 0.93821 1.02244 1.03061 1.18927 0.93864 0.96519 0.77688 0.86872 1.46354 1.73672 1.13138 1.08436 1.18277 0.78033 0.86387 0.81100 1.90615 1.55100 1.16085 1.83896 1.20835 1.45324 1.00211 0.91519 0.91241 1.25706 0.93019 0.94441 1.00088 1.70011 1.34415 1.08831 1.25986 0.86313 0.79110 0.79996 0.81107 1.19692 1.20346 1.18847 1.26670 0.97828 0.86441 0.97456 1.74649 1.14488 1.18230 0.96960 1.85427 1.54605 1.32984 1.21387 1.28286 1.04707 0.83759 0.98864 1.15872 0.76162 0.75298 0.79285 1.93331 1.60013 1.95649 1.64106 1.93325 1.75783 1.50029 1.94067 1.93345 1.72020 1.50579 1.96133 1.71874 1.11808 1.29205 1.01072 0.92511 0.89723 0.92559 0.78280 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.47 37.16 0.35 -2.27 15 2 C 0.24 4.58 3.12 -69.09 -0.22 4.37 15 3 H 0.11 2.38 7.58 -51.93 -0.39 1.99 15 4 N -0.76 -16.83 5.06 -56.35 -0.29 -17.11 15 5 C 0.56 15.36 7.71 -12.99 -0.10 15.26 15 6 O -0.57 -17.81 14.71 5.20 0.08 -17.73 15 7 C -0.54 -15.01 9.53 -35.63 -0.34 -15.35 15 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 15 9 C 0.09 2.40 5.49 -17.37 -0.10 2.30 15 10 N -0.76 -22.34 11.85 55.55 0.66 -21.68 15 11 Si 0.91 19.79 29.56 -169.99 -5.03 14.77 15 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 14 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 15 C 0.19 3.17 7.01 -156.37 -1.10 2.08 15 16 N -0.35 -5.40 11.87 30.90 0.37 -5.03 15 17 O 0.12 1.63 11.30 18.12 0.20 1.83 15 18 C 0.07 0.86 7.69 -13.06 -0.10 0.76 15 19 C 0.59 5.72 3.57 36.01 0.13 5.85 15 20 F -0.15 -1.36 17.30 2.25 0.04 -1.32 15 21 F -0.15 -1.32 17.30 2.25 0.04 -1.28 15 22 F -0.14 -1.44 17.27 2.25 0.04 -1.41 15 23 N -0.40 -6.25 11.51 -9.87 -0.11 -6.36 15 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 25 H 0.08 1.63 8.14 -51.93 -0.42 1.21 15 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 27 H 0.39 7.89 8.34 -40.82 -0.34 7.55 15 28 H 0.27 7.15 8.29 -40.82 -0.34 6.81 15 LS Contribution 279.14 15.07 4.21 4.21 Total: -1.00 -31.60 279.14 -2.81 -34.41 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -1.55 Total: 3.74 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -1.47 Total: 12.99 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.63 Total: -50.19 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.28 Total: -15.90 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.12 Total: -4.01 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.60 -2.81 -34.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910759139.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.896 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds