Wall clock time and date at job start Tue Mar 31 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30646 * 128.64861 * 2 1 4 4 O 1.20841 * 109.62500 * 180.02562 * 3 2 1 5 5 N 1.20901 * 115.90310 * 359.73827 * 4 3 2 6 6 C 1.31606 * 109.18431 * 0.42573 * 5 4 3 7 7 C 1.48270 * 128.71583 * 179.88475 * 6 5 4 8 8 O 1.21499 * 120.00269 * 179.67953 * 7 6 5 9 9 N 1.34780 * 119.99903 * 359.67509 * 7 6 5 10 10 C 1.46500 * 119.99910 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47129 * 324.99754 * 10 9 7 12 12 C 1.50699 * 109.46939 * 205.00060 * 10 9 7 13 13 H 1.08003 * 120.00271 * 359.97438 * 12 10 9 14 14 C 1.37877 * 120.00384 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99644 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00636 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47208 * 89.99493 * 16 14 12 18 18 H 1.48492 * 109.47321 * 210.00422 * 16 14 12 19 19 H 1.48507 * 109.46867 * 329.99848 * 16 14 12 20 20 C 1.52997 * 109.47473 * 85.00011 * 10 9 7 21 21 F 1.39905 * 109.47157 * 59.99740 * 20 10 9 22 22 F 1.39900 * 109.47010 * 300.00131 * 20 10 9 23 23 F 1.39897 * 109.47422 * 179.97438 * 20 10 9 24 24 H 1.09005 * 109.46879 * 269.97807 * 1 2 3 25 25 H 1.09004 * 109.46765 * 29.97018 * 1 2 3 26 26 H 1.08995 * 109.47689 * 149.97362 * 1 2 3 27 27 H 0.96994 * 120.00115 * 359.97438 * 9 7 6 28 28 H 0.97006 * 120.00331 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3229 1.0203 0.0000 4 8 3.4653 0.6264 -0.0005 5 7 3.6101 -0.5739 0.0041 6 6 2.4279 -1.1521 -0.0007 7 6 2.1032 -2.5988 -0.0002 8 8 0.9435 -2.9612 0.0007 9 7 3.0945 -3.5120 -0.0010 10 6 2.7736 -4.9414 -0.0011 11 1 1.8730 -5.1117 0.5888 12 6 3.9204 -5.7137 0.5985 13 1 4.8004 -5.1919 0.9447 14 6 3.8463 -7.0863 0.7052 15 7 2.7745 -7.7216 0.2842 16 14 5.2674 -8.0435 1.4492 17 1 5.0672 -8.1673 2.9154 18 1 5.3246 -9.3971 0.8413 19 1 6.5405 -7.3269 1.1822 20 6 2.5384 -5.4113 -1.4381 21 9 3.6944 -5.1927 -2.1953 22 9 1.4739 -4.6943 -1.9947 23 9 2.2326 -6.7764 -1.4382 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 4.0203 -3.2228 -0.0022 28 1 2.7224 -8.6874 0.3589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928808076.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:32 Heat of formation + Delta-G solvation = -60.901935 kcal Electronic energy + Delta-G solvation = -22494.266258 eV Core-core repulsion = 18329.632259 eV Total energy + Delta-G solvation = -4164.633999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.062 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.47972 -46.83536 -46.13450 -45.73629 -39.24166 -35.35394 -34.80901 -34.58885 -32.70421 -29.67595 -28.64315 -25.54703 -24.64525 -22.56733 -21.79126 -20.28919 -19.01992 -18.64436 -17.40087 -16.97637 -16.79570 -16.67363 -15.86998 -15.15033 -14.70813 -14.33271 -14.05576 -13.59316 -13.51946 -13.23259 -13.05275 -12.66545 -12.52691 -12.39918 -12.11692 -11.97743 -11.94438 -11.83280 -11.31698 -11.15061 -10.93893 -10.92464 -10.53698 -10.29745 -9.91461 -9.82172 -8.84891 -8.54600 -6.34496 -4.59234 0.87477 1.32294 2.92693 3.13488 3.20491 3.23278 3.25462 3.40685 3.54631 4.05431 4.16139 4.42287 4.72278 4.82483 4.97474 5.18556 5.38257 5.52215 5.67334 5.72180 5.94673 6.04958 6.68508 6.84241 7.28565 7.51532 7.95194 8.29495 8.46960 8.49969 9.09055 10.57287 Molecular weight = 279.06amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.005860 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.681314 B = 4776.891491 C = 5263.382719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.059 3.941 3 N -0.364 5.364 4 O 0.336 5.664 5 N -0.321 5.321 6 C -0.032 4.032 7 C 0.595 3.405 8 O -0.507 6.507 9 N -0.688 5.688 10 C 0.245 3.755 11 H 0.091 0.909 12 C -0.555 4.555 13 H 0.080 0.920 14 C 0.066 3.934 15 N -0.838 5.838 16 Si 0.918 3.082 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.269 1.269 20 C 0.417 3.583 21 F -0.207 7.207 22 F -0.218 7.218 23 F -0.134 7.134 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.407 0.593 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 10.214 -0.253 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 N -0.091 5.091 4 O 0.113 5.887 5 N -0.042 5.042 6 C -0.199 4.199 7 C 0.376 3.624 8 O -0.381 6.381 9 N -0.338 5.338 10 C 0.140 3.860 11 H 0.109 0.891 12 C -0.592 4.592 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.471 5.471 16 Si 0.744 3.256 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.194 1.194 20 C 0.361 3.639 21 F -0.189 7.189 22 F -0.200 7.200 23 F -0.115 7.115 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.242 0.758 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.296 10.385 -0.299 10.470 hybrid contribution 0.504 -1.013 -0.015 1.132 sum -0.792 9.372 -0.314 9.411 Atomic orbital electron populations 1.20337 0.82988 1.05221 1.04674 1.26225 1.00356 0.85263 0.98789 1.75011 0.91292 1.24172 1.18658 1.85040 1.23253 1.16844 1.63610 1.75381 1.23148 0.92583 1.13113 1.26340 0.87804 0.98894 1.06813 1.16581 0.86212 0.81332 0.78295 1.90816 1.18724 1.79175 1.49378 1.46000 1.09130 1.07062 1.71573 1.19915 1.02244 0.75527 0.88332 0.89117 1.20857 1.02328 0.91860 1.44111 0.90198 1.25075 0.97175 0.97498 0.94535 1.70382 1.27030 1.09826 1.39876 0.86160 0.81344 0.78952 0.79143 1.20087 1.20685 1.19401 1.23088 0.72123 0.77480 0.91231 1.93007 1.51517 1.94899 1.79458 1.93070 1.59173 1.79317 1.88411 1.93418 1.92664 1.29268 1.96108 0.88892 0.89678 0.87747 0.75792 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.22 36.00 0.37 -0.43 15 2 C 0.06 0.82 7.79 -79.33 -0.62 0.20 15 3 N -0.36 -4.95 12.22 33.76 0.41 -4.54 15 4 O 0.34 4.63 11.65 27.26 0.32 4.95 15 5 N -0.32 -4.89 12.13 33.50 0.41 -4.49 15 6 C -0.03 -0.53 7.56 -80.07 -0.61 -1.13 15 7 C 0.59 11.49 7.38 -12.13 -0.09 11.40 15 8 O -0.51 -10.78 14.53 5.37 0.08 -10.70 15 9 N -0.69 -13.98 4.98 -55.74 -0.28 -14.26 15 10 C 0.24 5.85 2.21 -69.08 -0.15 5.69 15 11 H 0.09 2.36 7.58 -51.93 -0.39 1.97 15 12 C -0.55 -13.74 8.46 -34.44 -0.29 -14.03 15 13 H 0.08 1.89 7.74 -52.48 -0.41 1.48 15 14 C 0.07 1.68 5.20 -17.82 -0.09 1.58 15 15 N -0.84 -22.18 9.51 55.43 0.53 -21.65 15 16 Si 0.92 19.61 29.54 -169.99 -5.02 14.59 15 17 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 20 C 0.42 10.33 2.81 37.16 0.10 10.43 15 21 F -0.21 -5.00 16.94 2.25 0.04 -4.97 15 22 F -0.22 -5.27 15.68 2.25 0.04 -5.23 15 23 F -0.13 -3.57 12.91 2.25 0.03 -3.54 15 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 26 H 0.10 1.23 7.31 -51.93 -0.38 0.85 15 27 H 0.41 7.55 8.39 -40.82 -0.34 7.21 15 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 LS Contribution 268.66 15.07 4.05 4.05 Total: -1.00 -27.40 268.66 -2.29 -29.69 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -1.50 Total: 2.38 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -1.38 Total: 13.72 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 1.07 Total: -44.94 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: 0.40 Total: -5.75 kcal Atomic # 9 Polarization: -13.84 SS G_CDS: 0.10 Total: -13.73 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.40 -2.29 -29.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808076.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.214 kcal (2) G-P(sol) polarization free energy of solvation -27.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds