Wall clock time and date at job start Tue Mar 31 2020 00:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99741 * 2 1 4 4 H 1.48500 * 109.47205 * 240.00098 * 3 2 1 5 5 H 1.48498 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47029 * 120.00049 * 3 2 1 7 7 C 1.37871 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99950 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47456 * 299.99999 * 9 7 2 11 11 N 1.46503 * 109.46996 * 179.97438 * 9 7 2 12 12 C 1.34770 * 119.99738 * 155.00321 * 11 9 7 13 13 O 1.21634 * 120.00291 * 359.97438 * 12 11 9 14 14 C 1.47191 * 119.99817 * 180.02562 * 12 11 9 15 15 C 1.44425 * 123.46449 * 180.02562 * 14 12 11 16 16 C 1.32766 * 113.08895 * 179.97438 * 15 14 12 17 17 S 1.75505 * 110.57315 * 359.74176 * 16 15 14 18 18 C 1.36014 * 123.46276 * 0.02562 * 14 12 11 19 19 C 1.52998 * 109.46777 * 60.00337 * 9 7 2 20 20 F 1.39907 * 109.47039 * 180.02562 * 19 9 7 21 21 F 1.39896 * 109.47166 * 299.99428 * 19 9 7 22 22 F 1.39894 * 109.47638 * 60.00007 * 19 9 7 23 23 H 0.96999 * 120.00847 * 359.97438 * 1 2 3 24 24 H 0.97004 * 119.99641 * 335.00206 * 11 9 7 25 25 H 1.08006 * 123.45820 * 359.97438 * 15 14 12 26 26 H 1.08001 * 124.71648 * 179.97438 * 16 15 14 27 27 H 1.08002 * 124.58647 * 359.97438 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 2.2031 -3.6126 -0.0018 12 6 1.8373 -4.8124 0.4912 13 8 0.7170 -4.9707 0.9375 14 6 2.7940 -5.9310 0.4905 15 6 2.4818 -7.2463 0.9988 16 6 3.4952 -8.0980 0.8967 17 16 4.8843 -7.3183 0.1600 18 6 4.0630 -5.8322 0.0110 19 6 0.3710 -2.5799 -1.2495 20 9 -0.3290 -3.7913 -1.2493 21 9 -0.5381 -1.5166 -1.2489 22 9 1.1748 -2.5055 -2.3920 23 1 -0.4851 0.8400 0.0004 24 1 3.0967 -3.4863 -0.3574 25 1 1.5224 -7.5101 1.4189 26 1 3.4673 -9.1285 1.2185 27 1 4.4904 -4.9351 -0.4121 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813634.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:20 Heat of formation + Delta-G solvation = -141.892923 kcal Electronic energy + Delta-G solvation = -20011.261353 eV Core-core repulsion = 16253.575441 eV Total energy + Delta-G solvation = -3757.685912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.028 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.35882 -46.01335 -45.62257 -39.30585 -36.61639 -34.67937 -32.64846 -30.12408 -28.06316 -24.83188 -24.49639 -22.03624 -20.53242 -19.07645 -18.15574 -17.22888 -16.76954 -16.66976 -16.47720 -15.72137 -14.94715 -14.50239 -14.20662 -13.75250 -13.03118 -12.98361 -12.88649 -12.63052 -12.46837 -12.41091 -12.34661 -12.27823 -11.97859 -11.82323 -11.19409 -11.10648 -10.89124 -10.81697 -10.42898 -9.70966 -9.33956 -9.02683 -8.74728 -8.45567 -8.23708 -6.25725 -4.50391 0.85815 1.56355 1.92540 2.18798 3.18303 3.23183 3.24751 3.76206 3.82533 4.19570 4.56207 4.81810 4.91091 5.22482 5.38292 5.47374 5.82603 5.85564 5.87438 6.10808 6.21143 6.33157 6.91417 7.12205 7.43634 7.60252 8.27195 8.46594 8.82996 9.17498 10.65856 Molecular weight = 279.03amu Principal moments of inertia in cm(-1) A = 0.025417 B = 0.005721 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.340528 B = 4892.995442 C = 5450.975306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.245 3.755 10 H 0.087 0.913 11 N -0.705 5.705 12 C 0.566 3.434 13 O -0.531 6.531 14 C -0.142 4.142 15 C -0.083 4.083 16 C -0.240 4.240 17 S 0.164 5.836 18 C -0.211 4.211 19 C 0.417 3.583 20 F -0.217 7.217 21 F -0.136 7.136 22 F -0.209 7.209 23 H 0.269 0.731 24 H 0.397 0.603 25 H 0.154 0.846 26 H 0.167 0.833 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.671 -10.606 -0.165 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.140 3.860 10 H 0.105 0.895 11 N -0.354 5.354 12 C 0.350 3.650 13 O -0.409 6.409 14 C -0.160 4.160 15 C -0.112 4.112 16 C -0.374 4.374 17 S 0.428 5.572 18 C -0.349 4.349 19 C 0.361 3.639 20 F -0.199 7.199 21 F -0.117 7.117 22 F -0.191 7.191 23 H 0.080 0.920 24 H 0.231 0.769 25 H 0.172 0.828 26 H 0.185 0.815 27 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.081 -11.060 -0.238 14.313 hybrid contribution -0.784 1.459 -0.182 1.666 sum 8.297 -9.601 -0.421 12.697 Atomic orbital electron populations 1.70385 1.05864 1.27550 1.43398 1.25079 0.95163 1.00122 0.93995 0.86261 0.79339 0.81275 0.78911 1.19814 1.20835 1.19765 1.20819 0.93719 0.88072 1.56437 0.90514 1.19757 0.88720 0.85677 0.91876 0.89525 1.45951 1.17170 1.10403 1.61865 1.17654 0.86678 0.82217 0.78461 1.90787 1.20698 1.82992 1.46408 1.20548 0.94175 0.95877 1.05405 1.21195 1.00188 0.90617 0.99223 1.25441 0.97388 1.04362 1.10236 1.82881 1.15878 1.00552 1.57885 1.25690 0.98667 1.04259 1.06309 1.23114 0.80903 0.72845 0.87074 1.93075 1.81440 1.48411 1.96967 1.93405 1.68361 1.53772 1.96192 1.92986 1.74442 1.96184 1.55496 0.91998 0.76891 0.82847 0.81537 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.95 9.50 55.43 0.53 -22.42 15 2 C 0.07 1.70 5.20 -17.82 -0.09 1.60 15 3 Si 0.92 19.96 29.54 -169.99 -5.02 14.94 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 7 C -0.55 -14.06 8.46 -34.44 -0.29 -14.35 15 8 H 0.08 1.82 7.74 -52.49 -0.41 1.42 15 9 C 0.25 6.13 2.21 -69.08 -0.15 5.97 15 10 H 0.09 2.41 7.58 -51.93 -0.39 2.02 15 11 N -0.70 -14.67 4.95 -56.08 -0.28 -14.95 15 12 C 0.57 11.65 7.32 -12.63 -0.09 11.56 15 13 O -0.53 -12.81 15.37 5.25 0.08 -12.73 15 14 C -0.14 -2.29 5.98 -104.63 -0.63 -2.92 15 15 C -0.08 -1.16 10.10 -39.02 -0.39 -1.56 15 16 C -0.24 -2.61 11.12 28.86 0.32 -2.29 15 17 S 0.16 1.65 23.02 -107.50 -2.48 -0.82 15 18 C -0.21 -2.73 10.38 29.93 0.31 -2.42 15 19 C 0.42 10.79 2.80 37.16 0.10 10.89 15 20 F -0.22 -5.60 15.68 2.25 0.04 -5.57 15 21 F -0.14 -3.78 12.91 2.25 0.03 -3.75 15 22 F -0.21 -5.19 16.94 2.25 0.04 -5.16 15 23 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 24 H 0.40 7.06 7.04 -40.82 -0.29 6.78 15 25 H 0.15 2.12 8.06 -52.48 -0.42 1.70 15 26 H 0.17 1.32 8.06 -52.49 -0.42 0.89 15 27 H 0.17 1.91 7.01 -52.49 -0.37 1.54 15 LS Contribution 266.61 15.07 4.02 4.02 Total: -1.00 -30.21 266.61 -5.39 -35.60 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -1.43 Total: 4.35 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.91 Total: 6.49 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.25 Total: -37.37 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 0.10 Total: -14.48 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.82 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.21 -5.39 -35.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813634.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.291 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds