Wall clock time and date at job start Tue Mar 31 2020 01:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00061 * 2 1 4 4 H 1.07999 * 120.00037 * 187.76572 * 3 2 1 5 5 C 1.38996 * 119.99932 * 7.76813 * 3 2 1 6 6 N 1.31401 * 120.00069 * 7.87006 * 5 3 2 7 7 Si 1.86800 * 119.99962 * 187.87513 * 5 3 2 8 8 H 1.48503 * 109.47387 * 59.99844 * 7 5 3 9 9 H 1.48498 * 109.47123 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47223 * 299.99597 * 7 5 3 11 11 C 1.34775 * 119.99932 * 180.02562 * 2 1 3 12 12 O 1.21630 * 120.00049 * 183.73014 * 11 2 1 13 13 C 1.47452 * 120.00198 * 3.72299 * 11 2 1 14 14 C 1.38534 * 119.76716 * 305.28656 * 13 11 2 15 15 N 1.33805 * 122.06769 * 180.25655 * 14 13 11 16 16 H 0.96998 * 119.60023 * 179.75039 * 15 14 13 17 17 C 1.37333 * 120.79510 * 359.48153 * 15 14 13 18 18 N 1.32027 * 134.43411 * 180.13653 * 17 15 14 19 19 C 1.33391 * 110.92293 * 180.35310 * 18 17 15 20 20 C 1.35806 * 110.86052 * 0.02562 * 19 18 17 21 21 C 1.41347 * 106.44881 * 359.97438 * 20 19 18 22 22 C 1.39011 * 135.63410 * 179.97438 * 21 20 19 23 23 Cl 1.73609 * 120.74909 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.46732 * 174.17052 * 1 2 3 25 25 H 1.09006 * 109.47170 * 294.16317 * 1 2 3 26 26 H 1.08993 * 109.47449 * 54.16665 * 1 2 3 27 27 H 0.96994 * 119.99612 * 179.97438 * 6 5 3 28 28 H 1.08005 * 118.96056 * 359.97438 * 14 13 11 29 29 H 1.07996 * 124.57030 * 179.97438 * 19 18 17 30 30 H 1.07995 * 126.77977 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2223 1.1902 -0.1264 5 6 1.4643 2.3842 0.1627 6 7 0.1868 2.3738 0.4702 7 14 2.3592 4.0092 -0.0559 8 1 2.9048 4.0924 -1.4345 9 1 1.4118 5.1303 0.1694 10 1 3.4724 4.0969 0.9232 11 6 2.1389 -1.1672 -0.0005 12 8 3.3532 -1.1684 0.0680 13 6 1.4040 -2.4428 -0.0840 14 6 0.4050 -2.7224 0.8342 15 7 -0.2872 -3.8671 0.8043 16 1 -0.9769 -4.0274 1.4672 17 6 -0.0367 -4.8154 -0.1570 18 7 -0.5399 -6.0035 -0.4365 19 6 0.0676 -6.5410 -1.4955 20 6 1.0270 -5.7089 -1.9766 21 6 1.0136 -4.5623 -1.1501 22 6 1.7231 -3.3682 -1.0955 23 17 2.9746 -3.0259 -2.2490 24 1 -0.3633 -1.0224 -0.1044 25 1 -0.3634 0.4207 0.9377 26 1 -0.3634 0.6016 -0.8331 27 1 -0.2913 3.2100 0.5841 28 1 0.1810 -1.9955 1.6009 29 1 -0.1708 -7.5079 -1.9134 30 1 1.6722 -5.8874 -2.8240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151025600.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:04 Heat of formation + Delta-G solvation = 49.309653 kcal Electronic energy + Delta-G solvation = -19116.154403 eV Core-core repulsion = 15938.865442 eV Total energy + Delta-G solvation = -3177.288961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.58823 -40.54407 -38.92434 -37.93851 -36.70473 -34.59534 -33.53747 -30.93597 -29.90070 -28.21163 -26.61407 -25.20995 -24.24618 -22.43537 -20.79407 -19.08665 -18.79404 -18.67219 -17.72867 -17.53485 -16.74905 -16.38839 -15.95535 -15.73064 -15.58733 -14.63478 -14.44004 -13.78276 -13.72123 -13.67571 -13.56010 -13.29212 -13.05167 -12.81565 -12.63292 -12.27840 -12.15089 -12.11612 -11.17355 -11.05162 -10.67795 -10.52894 -9.87284 -9.22558 -8.84035 -8.27622 -5.90766 -1.04123 0.03733 0.80741 1.24621 1.41432 1.45620 1.53991 1.88713 2.18827 2.28863 2.38526 2.89030 3.09902 3.23209 3.50557 3.65842 3.74467 4.12128 4.30343 4.44195 4.56404 4.87814 4.89711 5.15057 5.19823 5.45191 5.50182 5.52661 5.70244 6.01995 6.09134 6.45202 6.95252 7.14178 7.41364 7.96296 8.63987 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.005481 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.741984 B = 5107.252982 C = 5748.282881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.442 5.442 3 C -0.335 4.335 4 H 0.080 0.920 5 C 0.004 3.996 6 N -0.888 5.888 7 Si 0.987 3.013 8 H -0.276 1.276 9 H -0.269 1.269 10 H -0.273 1.273 11 C 0.484 3.516 12 O -0.614 6.614 13 C -0.216 4.216 14 C 0.216 3.784 15 N -0.464 5.464 16 H 0.450 0.550 17 C 0.244 3.756 18 N -0.543 5.543 19 C 0.049 3.951 20 C -0.232 4.232 21 C -0.189 4.189 22 C 0.129 3.871 23 Cl -0.039 7.039 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.275 0.725 28 H 0.227 0.773 29 H 0.189 0.811 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -8.854 0.613 10.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.158 5.158 3 C -0.463 4.463 4 H 0.098 0.902 5 C -0.198 4.198 6 N -0.527 5.527 7 Si 0.811 3.189 8 H -0.201 1.201 9 H -0.193 1.193 10 H -0.198 1.198 11 C 0.272 3.728 12 O -0.501 6.501 13 C -0.226 4.226 14 C 0.070 3.930 15 N -0.060 5.060 16 H 0.293 0.707 17 C -0.005 4.005 18 N -0.264 5.264 19 C -0.095 4.095 20 C -0.254 4.254 21 C -0.198 4.198 22 C 0.095 3.905 23 Cl -0.009 7.009 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.243 0.757 29 H 0.206 0.794 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.926 -9.249 1.045 11.034 hybrid contribution 1.097 1.301 -0.662 1.826 sum -4.829 -7.948 0.383 9.308 Atomic orbital electron populations 1.21966 0.78699 0.98335 1.04026 1.43775 1.07117 1.04264 1.60688 1.19675 0.93519 0.83504 1.49568 0.90224 1.25938 0.96698 1.01911 0.95252 1.70099 1.08694 1.28740 1.45172 0.85075 0.78033 0.77030 0.78747 1.20140 1.19348 1.19843 1.17518 0.86855 0.82853 0.85598 1.90634 1.14913 1.86938 1.57585 1.19253 1.03943 0.98230 1.01125 1.22683 0.87354 0.86236 0.96712 1.40324 1.30335 1.11180 1.24112 0.70658 1.20430 0.96355 0.92144 0.91551 1.69555 1.31016 1.06025 1.19757 1.22730 0.93987 1.00235 0.92534 1.21537 1.05760 0.94234 1.03858 1.20089 1.01215 0.95966 1.02492 1.21425 0.87889 0.92092 0.89058 1.98399 1.50482 1.94803 1.57195 0.92267 0.89776 0.93937 0.91499 0.75711 0.79423 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.35 7.93 127.77 1.01 5.36 16 2 N -0.44 -20.71 3.02 -662.60 -2.00 -22.72 16 3 C -0.33 -17.59 9.53 84.08 0.80 -16.79 16 4 H 0.08 4.53 7.21 -2.91 -0.02 4.51 16 5 C 0.00 0.21 5.38 84.94 0.46 0.66 16 6 N -0.89 -41.75 9.66 21.67 0.21 -41.54 16 7 Si 0.99 39.75 29.56 68.60 2.03 41.78 16 8 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 9 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 C 0.48 22.02 6.53 86.67 0.57 22.59 16 12 O -0.61 -32.95 15.83 -4.13 -0.07 -33.01 16 13 C -0.22 -7.64 4.84 -20.16 -0.10 -7.74 16 14 C 0.22 5.22 8.46 84.46 0.71 5.94 16 15 N -0.46 -9.62 5.27 -186.76 -0.98 -10.60 16 16 H 0.45 5.28 8.91 -92.71 -0.83 4.45 16 17 C 0.24 7.10 8.64 135.74 1.17 8.27 16 18 N -0.54 -16.40 11.17 -189.01 -2.11 -18.52 16 19 C 0.05 1.36 11.70 83.89 0.98 2.34 16 20 C -0.23 -6.97 10.95 22.47 0.25 -6.72 16 21 C -0.19 -6.25 6.25 -20.11 -0.13 -6.38 16 22 C 0.13 4.69 6.42 23.07 0.15 4.84 16 23 Cl -0.04 -1.46 27.48 -2.72 -0.07 -1.54 16 24 H 0.06 1.80 4.63 -2.39 -0.01 1.79 16 25 H 0.08 3.29 6.74 -2.38 -0.02 3.27 16 26 H 0.04 1.82 7.43 -2.39 -0.02 1.80 16 27 H 0.27 12.20 8.31 -92.71 -0.77 11.43 16 28 H 0.23 3.94 7.32 -2.91 -0.02 3.92 16 29 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 30 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -68.40 276.60 3.27 -65.14 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.39 Total: 8.64 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 5.88 Total: 12.38 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -4.89 Total: -93.37 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.07 Total: -33.01 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.54 kcal Total: -68.40 3.27 -65.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151025600.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.445 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds