Wall clock time and date at job start Tue Mar 31 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35921 * 117.00025 * 2 1 4 4 C 1.39686 * 119.68305 * 0.02562 * 3 2 1 5 5 C 1.36218 * 120.97187 * 180.02562 * 4 3 2 6 6 C 1.40173 * 119.80243 * 359.97438 * 5 4 3 7 7 N 1.34174 * 121.84894 * 179.97438 * 6 5 4 8 8 C 1.31331 * 120.49031 * 180.02562 * 7 6 5 9 9 Cl 1.73602 * 118.52064 * 179.97438 * 8 7 6 10 10 N 1.32431 * 122.95712 * 359.97438 * 8 7 6 11 11 C 1.32674 * 121.45509 * 0.02562 * 10 8 7 12 12 N 1.37868 * 120.90075 * 180.02562 * 11 10 8 13 13 C 1.36838 * 119.99430 * 359.97438 * 12 11 10 14 14 H 1.07997 * 120.00438 * 0.02562 * 13 12 11 15 15 C 1.38915 * 119.99707 * 179.97438 * 13 12 11 16 16 N 1.31480 * 119.99987 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99968 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46845 * 60.00191 * 17 15 13 19 19 H 1.48495 * 109.46825 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47188 * 300.00019 * 17 15 13 21 21 C 1.41639 * 119.47372 * 0.02562 * 6 5 4 22 22 C 1.37855 * 119.69053 * 180.02562 * 3 2 1 23 23 H 1.09005 * 109.46646 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46735 * 299.99375 * 1 2 3 25 25 H 1.08995 * 109.47327 * 59.99759 * 1 2 3 26 26 H 1.08001 * 119.51701 * 0.03451 * 4 3 2 27 27 H 1.08003 * 120.09981 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99926 * 179.97438 * 12 11 10 29 29 H 0.96997 * 119.99834 * 179.97438 * 16 15 13 30 30 H 1.08010 * 120.31199 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2789 2.3783 0.0005 5 6 1.8698 3.6057 0.0000 6 6 3.2680 3.7057 -0.0005 7 7 3.8929 4.8930 -0.0015 8 6 5.2047 4.9556 -0.0025 9 17 5.9600 6.5187 -0.0045 10 7 5.9773 3.8800 -0.0021 11 6 5.4620 2.6574 -0.0011 12 7 6.2771 1.5455 -0.0001 13 6 7.6373 1.6945 -0.0007 14 1 8.0724 2.6830 -0.0015 15 6 8.4587 0.5742 0.0008 16 7 7.9291 -0.6293 0.0023 17 14 10.3156 0.7774 0.0008 18 1 10.7313 1.5287 1.2124 19 1 10.9600 -0.5604 0.0019 20 1 10.7317 1.5256 -1.2126 21 6 4.0511 2.5254 -0.0011 22 6 3.4232 1.2758 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 0.2012 2.3068 0.0015 27 1 1.2629 4.4990 0.0000 28 1 5.8863 0.6577 0.0010 29 1 8.5026 -1.4115 0.0030 30 1 4.0115 0.3699 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:16 Heat of formation + Delta-G solvation = 4.947499 kcal Electronic energy + Delta-G solvation = -18655.886891 eV Core-core repulsion = 15476.674243 eV Total energy + Delta-G solvation = -3179.212648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.052 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.00208 -40.24797 -38.15128 -37.79005 -36.73067 -34.80700 -32.72335 -32.12693 -30.34837 -27.94352 -27.26142 -25.08517 -24.28141 -22.73466 -20.66168 -19.97871 -18.98185 -18.51455 -17.04739 -16.68314 -16.63087 -16.52671 -16.01334 -15.94264 -15.52888 -15.16575 -14.63550 -13.88456 -13.84993 -13.66841 -13.53028 -13.18946 -12.79929 -12.70327 -12.37423 -12.24465 -12.15666 -12.02370 -11.53992 -11.53904 -11.20086 -10.21396 -10.01709 -9.81876 -8.83828 -8.55239 -6.02485 -0.41768 -0.01855 0.70906 1.00295 1.39984 1.50089 1.51710 2.08662 2.12319 2.43246 2.69879 2.81551 3.34162 3.61637 3.68704 3.88652 4.01585 4.22407 4.48575 4.50290 4.60386 4.62132 4.76909 4.86484 5.10037 5.16720 5.28751 5.33493 5.53993 5.78089 6.21171 6.46687 6.55801 6.91870 7.07441 7.63320 8.29689 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.006872 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.253153 B = 4073.665944 C = 6268.774356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.337 6.337 3 C 0.092 3.908 4 C -0.137 4.137 5 C -0.090 4.090 6 C 0.154 3.846 7 N -0.607 5.607 8 C 0.409 3.591 9 Cl 0.001 6.999 10 N -0.628 5.628 11 C 0.355 3.645 12 N -0.474 5.474 13 C -0.306 4.306 14 H 0.114 0.886 15 C -0.005 4.005 16 N -0.887 5.887 17 Si 1.010 2.990 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.263 1.263 21 C -0.172 4.172 22 C -0.127 4.127 23 H 0.117 0.883 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.175 0.825 27 H 0.159 0.841 28 H 0.412 0.588 29 H 0.293 0.707 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 0.965 0.000 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.045 3.955 4 C -0.157 4.157 5 C -0.110 4.110 6 C 0.032 3.968 7 N -0.339 5.339 8 C 0.111 3.889 9 Cl 0.028 6.972 10 N -0.367 5.367 11 C 0.101 3.899 12 N -0.078 5.078 13 C -0.438 4.438 14 H 0.132 0.868 15 C -0.212 4.212 16 N -0.521 5.521 17 Si 0.831 3.169 18 H -0.188 1.188 19 H -0.191 1.191 20 H -0.188 1.188 21 C -0.181 4.181 22 C -0.149 4.149 23 H 0.135 0.865 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.192 0.808 27 H 0.177 0.823 28 H 0.250 0.750 29 H 0.103 0.897 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.123 1.380 0.000 10.217 hybrid contribution 0.507 -0.957 0.001 1.083 sum -9.616 0.423 0.001 9.626 Atomic orbital electron populations 1.23399 0.76234 1.05629 1.02619 1.86067 1.23711 1.26156 1.89207 1.18712 0.91093 0.85391 1.00297 1.21301 1.01733 0.90313 1.02398 1.20570 0.90389 0.99016 1.01036 1.18822 0.95085 0.86249 0.96667 1.68121 1.08285 1.26729 1.30798 1.22338 0.86269 0.87491 0.92851 1.98323 1.81062 1.21387 1.96377 1.66977 1.40171 0.96722 1.32815 1.18192 0.86636 0.86823 0.98262 1.41011 1.06239 1.05169 1.55347 1.20384 0.80455 0.96347 1.46662 0.86799 1.26527 1.06638 0.93587 0.94407 1.69676 1.39953 0.99024 1.43427 0.84711 0.74034 0.78343 0.79822 1.18784 1.19148 1.18791 1.18679 0.92812 0.95875 1.10743 1.20035 0.93116 0.95744 1.06005 0.86496 0.91240 0.91249 0.80762 0.82333 0.74966 0.89662 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.80 113.37 1.11 1.35 16 2 O -0.34 -9.40 10.48 -92.66 -0.97 -10.37 16 3 C 0.09 2.91 6.68 22.53 0.15 3.06 16 4 C -0.14 -3.61 8.94 22.15 0.20 -3.42 16 5 C -0.09 -2.80 9.99 22.27 0.22 -2.57 16 6 C 0.15 6.34 6.61 40.10 0.27 6.60 16 7 N -0.61 -26.61 10.40 -184.61 -1.92 -28.53 16 8 C 0.41 18.72 8.15 180.83 1.47 20.19 16 9 Cl 0.00 0.03 29.24 -2.72 -0.08 -0.05 16 10 N -0.63 -31.35 9.18 -187.38 -1.72 -33.07 16 11 C 0.36 17.44 7.50 134.01 1.01 18.45 16 12 N -0.47 -23.60 5.34 -187.82 -1.00 -24.61 16 13 C -0.31 -15.65 9.71 84.07 0.82 -14.84 16 14 H 0.11 6.00 7.12 -2.91 -0.02 5.97 16 15 C -0.01 -0.26 5.50 84.91 0.47 0.21 16 16 N -0.89 -43.36 13.05 21.66 0.28 -43.07 16 17 Si 1.01 38.02 29.55 68.60 2.03 40.05 16 18 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 21 C -0.17 -7.54 5.75 -21.19 -0.12 -7.66 16 22 C -0.13 -4.95 9.50 22.57 0.21 -4.74 16 23 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.07 0.89 7.64 -2.38 -0.02 0.87 16 25 H 0.07 0.89 7.64 -2.39 -0.02 0.87 16 26 H 0.18 2.91 6.22 -2.91 -0.02 2.90 16 27 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.41 20.00 6.14 -92.71 -0.57 19.43 16 29 H 0.29 13.24 8.31 -92.71 -0.77 12.47 16 30 H 0.12 4.71 6.58 -2.91 -0.02 4.69 16 Total: -1.00 -60.43 282.56 3.06 -57.37 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.64 Total: 25.64 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.80 Total: 16.64 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -4.36 Total: -129.28 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.97 Total: -10.37 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -60.43 3.06 -57.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.313 kcal (2) G-P(sol) polarization free energy of solvation -60.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds