Wall clock time and date at job start Tue Mar 31 2020 00:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48499 * 109.47083 * 269.72794 * 3 2 1 5 5 H 1.48507 * 109.47101 * 29.72162 * 3 2 1 6 6 H 1.48495 * 109.47461 * 149.72592 * 3 2 1 7 7 C 1.40026 * 120.00003 * 179.72473 * 2 1 3 8 8 H 1.07990 * 120.00082 * 339.34404 * 7 2 1 9 9 C 1.41322 * 119.99835 * 159.34204 * 7 2 1 10 10 C 1.40592 * 119.78295 * 170.74779 * 9 7 2 11 11 C 1.38342 * 119.14809 * 180.02562 * 10 9 7 12 12 C 1.38636 * 118.68243 * 0.02562 * 11 10 9 13 13 C 1.39758 * 119.48937 * 359.97438 * 12 11 10 14 14 N 1.38825 * 119.58168 * 180.02562 * 13 12 11 15 15 C 1.46500 * 120.00299 * 353.22265 * 14 13 12 16 16 H 1.09002 * 110.62847 * 307.94883 * 15 14 13 17 17 S 1.82474 * 110.70794 * 71.05460 * 15 14 13 18 18 C 1.77282 * 94.25848 * 118.38215 * 17 15 14 19 19 O 1.21577 * 126.16288 * 180.02562 * 18 17 15 20 20 N 1.33468 * 107.67775 * 0.02562 * 18 17 15 21 21 C 1.32251 * 121.25632 * 359.97438 * 20 18 17 22 22 O 1.21235 * 123.10008 * 180.02562 * 21 20 18 23 23 N 1.31978 * 120.82857 * 359.72963 * 13 12 11 24 24 H 0.97000 * 120.00257 * 185.12084 * 1 2 3 25 25 H 1.08003 * 120.42359 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.65930 * 180.02562 * 11 10 9 27 27 H 1.07994 * 120.25376 * 179.97438 * 12 11 10 28 28 H 0.97000 * 119.99569 * 173.22193 * 14 13 12 29 29 H 0.97002 * 119.37582 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4947 2.0430 -1.4000 5 1 1.4360 2.6544 0.6942 6 1 3.5361 1.4419 0.7058 7 6 2.0075 -1.2126 0.0058 8 1 1.5197 -2.1162 0.3401 9 6 3.3526 -1.2540 -0.4258 10 6 4.1108 -2.4229 -0.2375 11 6 5.4264 -2.4488 -0.6645 12 6 5.9534 -1.3160 -1.2653 13 6 5.1490 -0.1842 -1.4242 14 7 5.6746 0.9511 -2.0260 15 6 7.1009 1.0122 -2.3550 16 1 7.7070 0.7640 -1.4837 17 16 7.4897 -0.0991 -3.7491 18 6 8.0444 1.2090 -4.8094 19 8 8.4553 1.0850 -5.9469 20 7 7.9296 2.3544 -4.1340 21 6 7.4679 2.3771 -2.8949 22 8 7.3494 3.3976 -2.2511 23 7 3.8944 -0.1831 -1.0147 24 1 -0.4850 -0.8367 0.0750 25 1 3.6720 -3.2892 0.2352 26 1 6.0309 -3.3340 -0.5325 27 1 6.9775 -1.3081 -1.6077 28 1 5.0974 1.7039 -2.2287 29 1 8.1891 3.1862 -4.5603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163666849.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:35 Heat of formation + Delta-G solvation = -25.109140 kcal Electronic energy + Delta-G solvation = -18792.048389 eV Core-core repulsion = 15613.576093 eV Total energy + Delta-G solvation = -3178.472296 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.046 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71200 -39.31211 -38.80211 -36.15278 -35.49079 -33.64884 -31.28726 -30.10260 -27.40159 -25.54167 -25.13437 -22.33496 -22.01489 -20.55057 -18.96785 -18.55126 -18.33915 -17.31190 -16.77935 -16.21742 -15.79010 -15.38743 -14.92059 -14.76237 -14.49668 -14.19876 -13.87482 -13.05436 -12.90069 -12.36981 -12.09200 -11.96164 -11.41893 -10.98173 -10.97436 -10.83280 -10.26290 -10.23330 -9.94353 -9.69615 -9.07916 -8.81580 -8.60518 -8.02445 -7.40910 -7.24117 -4.86919 0.55693 0.70349 1.20117 2.05742 2.31943 2.54006 2.68932 3.25718 3.35172 3.45559 3.54023 3.83114 4.26665 4.48234 4.62742 5.25789 5.46574 5.65260 5.92524 6.01061 6.25653 6.26738 6.45031 6.47234 6.96252 7.03900 7.20992 7.34200 7.41428 7.55717 7.74981 8.04743 8.27219 8.56380 9.42143 9.86957 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.005896 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.408310 B = 4747.880944 C = 5471.911713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.053 3.947 3 Si 1.138 2.862 4 H -0.284 1.284 5 H -0.322 1.322 6 H -0.282 1.282 7 C -0.475 4.475 8 H 0.086 0.914 9 C 0.284 3.716 10 C -0.291 4.291 11 C -0.016 4.016 12 C -0.355 4.355 13 C 0.427 3.573 14 N -0.695 5.695 15 C 0.171 3.829 16 H 0.160 0.840 17 S -0.127 6.127 18 C 0.536 3.464 19 O -0.441 6.441 20 N -0.677 5.677 21 C 0.532 3.468 22 O -0.446 6.446 23 N -0.606 5.606 24 H 0.286 0.714 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.408 0.592 29 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.241 2.923 -4.439 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.171 4.171 3 Si 0.969 3.031 4 H -0.211 1.211 5 H -0.254 1.254 6 H -0.208 1.208 7 C -0.506 4.506 8 H 0.104 0.896 9 C 0.161 3.839 10 C -0.314 4.314 11 C -0.040 4.040 12 C -0.382 4.382 13 C 0.192 3.808 14 N -0.335 5.335 15 C -0.052 4.052 16 H 0.177 0.823 17 S 0.094 5.906 18 C 0.216 3.784 19 O -0.314 6.314 20 N -0.347 5.347 21 C 0.314 3.686 22 O -0.314 6.314 23 N -0.332 5.332 24 H 0.098 0.902 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.246 0.754 29 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 12.560 4.156 -4.915 14.113 hybrid contribution 0.614 -0.809 -0.094 1.020 sum 13.174 3.348 -5.009 14.486 Atomic orbital electron populations 1.70610 1.08419 1.33304 1.29104 1.27671 0.95112 1.05997 0.88293 0.82243 0.72974 0.70259 0.77589 1.21093 1.25376 1.20837 1.20714 0.95207 0.97608 1.37091 0.89625 1.18145 0.92480 0.86094 0.87176 1.21518 0.95370 1.00564 1.13944 1.20684 0.94549 0.95668 0.93066 1.20412 1.00084 0.95814 1.21925 1.17845 0.89716 0.84294 0.88987 1.43930 1.03906 1.19030 1.66662 1.23579 0.90131 0.91820 0.99622 0.82323 1.88796 1.76110 1.12779 1.12887 1.22354 0.79486 0.87044 0.89501 1.90936 1.43847 1.81429 1.15219 1.44445 1.60727 1.13433 1.16103 1.19753 0.76721 0.91259 0.80900 1.90913 1.47927 1.33868 1.58684 1.66294 1.10953 1.31146 1.24836 0.90214 0.87741 0.87729 0.88184 0.75376 0.73945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.85 13.65 55.55 0.76 -20.09 15 2 C 0.05 1.38 5.50 -17.35 -0.10 1.29 15 3 Si 1.14 26.78 25.88 -169.99 -4.40 22.38 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.32 -7.46 7.11 56.52 0.40 -7.06 15 6 H -0.28 -6.68 6.88 56.52 0.39 -6.29 15 7 C -0.47 -12.39 9.47 -37.74 -0.36 -12.75 15 8 H 0.09 2.22 8.06 -52.49 -0.42 1.80 15 9 C 0.28 7.08 6.22 -85.00 -0.53 6.56 15 10 C -0.29 -6.50 9.83 -38.66 -0.38 -6.88 15 11 C -0.02 -0.31 10.15 -39.40 -0.40 -0.71 15 12 C -0.36 -6.75 8.82 -38.87 -0.34 -7.09 15 13 C 0.43 8.76 7.55 -155.32 -1.17 7.59 15 14 N -0.69 -11.55 5.48 -57.83 -0.32 -11.87 15 15 C 0.17 2.15 3.22 -4.90 -0.02 2.13 15 16 H 0.16 1.71 7.83 -51.93 -0.41 1.30 15 17 S -0.13 -1.62 21.07 -107.50 -2.26 -3.89 15 18 C 0.54 6.28 8.91 53.47 0.48 6.76 15 19 O -0.44 -6.17 18.05 5.30 0.10 -6.07 15 20 N -0.68 -6.51 5.05 -14.78 -0.07 -6.58 15 21 C 0.53 6.01 7.68 -11.80 -0.09 5.92 15 22 O -0.45 -6.02 18.02 5.60 0.10 -5.92 15 23 N -0.61 -14.53 5.57 -10.33 -0.06 -14.58 15 24 H 0.29 7.18 8.73 -40.82 -0.36 6.83 15 25 H 0.10 2.20 8.06 -52.48 -0.42 1.77 15 26 H 0.10 1.72 8.06 -52.49 -0.42 1.29 15 27 H 0.10 1.62 5.61 -52.49 -0.29 1.33 15 28 H 0.41 6.80 8.65 -40.82 -0.35 6.45 15 29 H 0.42 3.05 8.88 -40.82 -0.36 2.69 15 LS Contribution 275.05 15.07 4.15 4.15 Total: -1.00 -28.92 275.05 -6.77 -35.69 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -1.85 Total: 3.97 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -2.91 Total: 2.81 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.31 Total: -53.13 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.20 Total: -11.99 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.40 Total: 22.38 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.26 Total: -3.89 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.92 -6.77 -35.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163666849.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.585 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds