Wall clock time and date at job start Tue Mar 31 2020 00:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30583 * 1 3 3 Si 1.86801 * 119.99945 * 2 1 4 4 H 1.48495 * 109.47221 * 85.28085 * 3 2 1 5 5 H 1.48506 * 109.47255 * 325.28147 * 3 2 1 6 6 H 1.48503 * 109.47101 * 205.28264 * 3 2 1 7 7 C 1.40352 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99737 * 33.15598 * 7 2 1 9 9 C 1.40171 * 119.99951 * 213.16160 * 7 2 1 10 10 C 1.39075 * 119.74060 * 198.19254 * 9 7 2 11 11 C 1.42031 * 118.74106 * 179.73944 * 10 9 7 12 12 N 1.32204 * 120.82823 * 180.27595 * 11 10 9 13 13 C 1.46506 * 119.99528 * 187.85080 * 12 11 10 14 14 H 1.08999 * 110.63174 * 3.35114 * 13 12 11 15 15 S 1.82466 * 110.70650 * 126.47000 * 13 12 11 16 16 C 1.77285 * 94.26101 * 118.37659 * 15 13 12 17 17 O 1.21571 * 126.16149 * 179.97438 * 16 15 13 18 18 N 1.33462 * 107.67251 * 0.02562 * 16 15 13 19 19 C 1.32246 * 121.26357 * 359.97438 * 18 16 15 20 20 O 1.21239 * 123.09917 * 180.02562 * 19 18 16 21 21 C 1.46917 * 118.33037 * 0.51783 * 11 10 9 22 22 C 1.34368 * 119.37190 * 359.73682 * 21 11 10 23 23 N 1.36427 * 121.22383 * 0.02562 * 22 21 11 24 24 H 0.97002 * 119.09027 * 180.02562 * 23 22 21 25 25 H 0.96997 * 119.99935 * 185.09814 * 1 2 3 26 26 H 1.08000 * 120.62790 * 359.97438 * 10 9 7 27 27 H 0.97004 * 119.36784 * 180.02562 * 18 16 15 28 28 H 1.08008 * 120.31053 * 179.71726 * 21 11 10 29 29 H 1.08001 * 119.38863 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.3876 2.1040 1.3953 5 1 1.4907 2.6219 -0.7974 6 1 3.5837 1.4135 -0.5980 7 6 2.0076 -1.2155 0.0005 8 1 1.5995 -2.0748 -0.5106 9 6 3.2381 -1.3140 0.6646 10 6 4.1033 -2.3601 0.3625 11 6 5.3470 -2.4363 1.0442 12 7 6.2029 -3.4101 0.7854 13 6 7.3998 -3.5728 1.6146 14 1 7.4023 -2.8509 2.4312 15 16 7.5116 -5.2763 2.2587 16 6 9.0475 -5.6244 1.4444 17 8 9.6662 -6.6696 1.4963 18 7 9.4027 -4.5319 0.7652 19 6 8.6531 -3.4424 0.7770 20 8 8.9433 -2.4325 0.1724 21 6 5.6561 -1.4088 2.0478 22 6 4.7649 -0.4320 2.2870 23 7 3.5785 -0.3772 1.6157 24 1 2.9580 0.3419 1.8127 25 1 -0.4850 -0.8367 0.0746 26 1 3.8362 -3.0984 -0.3791 27 1 10.2261 -4.5372 0.2523 28 1 6.5907 -1.4385 2.5884 29 1 4.9917 0.3232 3.0251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163672860.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:08 Heat of formation + Delta-G solvation = -17.997552 kcal Electronic energy + Delta-G solvation = -18424.596194 eV Core-core repulsion = 15246.432280 eV Total energy + Delta-G solvation = -3178.163914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.046 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97346 -39.21511 -38.55427 -35.47584 -35.14734 -34.08769 -31.20342 -30.25367 -27.27631 -25.65114 -24.56325 -22.00626 -21.89917 -20.33369 -18.86372 -18.14931 -17.92893 -17.74447 -16.61338 -15.90526 -15.47350 -15.08593 -14.86050 -14.73981 -14.28615 -13.82733 -13.65147 -13.39827 -12.78759 -12.72680 -11.81346 -11.52251 -11.47929 -11.20195 -11.00516 -10.72309 -10.56558 -10.42297 -10.11644 -9.71659 -9.56067 -8.75457 -8.53181 -8.07455 -7.95901 -6.63321 -5.14626 1.09325 1.34926 1.80204 2.21721 2.35697 2.60709 2.78430 2.84541 2.99990 3.13692 3.35858 3.78665 3.93966 4.38766 4.97174 5.08031 5.13996 5.52026 5.78953 5.87969 6.14325 6.24290 6.60752 6.81763 6.90168 7.01812 7.03641 7.25239 7.53106 7.66157 7.73791 7.80800 8.11752 8.34542 9.02026 9.22953 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.037681 B = 0.004221 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.908627 B = 6632.549445 C = 6894.006749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.039 3.961 3 Si 1.038 2.962 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.505 4.505 8 H 0.109 0.891 9 C 0.303 3.697 10 C -0.343 4.343 11 C 0.296 3.704 12 N -0.637 5.637 13 C 0.104 3.896 14 H 0.117 0.883 15 S -0.159 6.159 16 C 0.551 3.449 17 O -0.463 6.463 18 N -0.681 5.681 19 C 0.537 3.463 20 O -0.471 6.471 21 C -0.285 4.285 22 C 0.128 3.872 23 N -0.630 5.630 24 H 0.398 0.602 25 H 0.302 0.698 26 H 0.122 0.878 27 H 0.409 0.591 28 H 0.124 0.876 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.846 2.718 5.094 8.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.190 4.190 3 Si 0.860 3.140 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.536 4.536 8 H 0.127 0.873 9 C 0.196 3.804 10 C -0.372 4.372 11 C 0.142 3.858 12 N -0.373 5.373 13 C -0.123 4.123 14 H 0.134 0.866 15 S 0.068 5.932 16 C 0.231 3.769 17 O -0.338 6.338 18 N -0.349 5.349 19 C 0.320 3.680 20 O -0.341 6.341 21 C -0.315 4.315 22 C 0.001 3.999 23 N -0.243 5.243 24 H 0.235 0.765 25 H 0.115 0.885 26 H 0.140 0.860 27 H 0.248 0.752 28 H 0.141 0.859 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.372 2.818 5.044 7.890 hybrid contribution 1.136 -0.221 -0.199 1.174 sum 6.508 2.597 4.844 8.519 Atomic orbital electron populations 1.70395 1.08555 1.34358 1.24184 1.27445 0.95732 1.04588 0.91193 0.84122 0.77408 0.73832 0.78605 1.19817 1.18907 1.17851 1.20580 1.02124 1.00576 1.30317 0.87349 1.17735 0.92006 0.85377 0.85269 1.20088 0.94818 1.07237 1.15105 1.20366 0.91808 0.86824 0.86768 1.74151 1.04476 1.28761 1.29920 1.23839 0.95834 0.93812 0.98819 0.86578 1.87811 1.23446 1.22550 1.59436 1.21923 0.90028 0.84143 0.80842 1.90879 1.57144 1.24709 1.61082 1.44503 1.27112 1.15147 1.48117 1.20732 0.84444 0.81803 0.81001 1.90773 1.72451 1.29376 1.41530 1.22330 1.01148 1.00702 1.07282 1.21278 0.86059 0.98049 0.94485 1.42280 1.17632 1.28386 1.36033 0.76460 0.88548 0.85966 0.75153 0.85854 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -15.86 13.64 55.57 0.76 -15.10 15 2 C 0.04 0.79 5.24 -17.29 -0.09 0.69 15 3 Si 1.04 17.48 25.77 -169.99 -4.38 13.10 15 4 H -0.27 -3.91 6.67 56.52 0.38 -3.54 15 5 H -0.26 -4.43 7.11 56.52 0.40 -4.03 15 6 H -0.25 -4.46 7.11 56.52 0.40 -4.06 15 7 C -0.50 -10.88 9.29 -38.06 -0.35 -11.23 15 8 H 0.11 2.46 8.06 -52.49 -0.42 2.04 15 9 C 0.30 6.37 5.97 -84.16 -0.50 5.87 15 10 C -0.34 -7.72 9.83 -37.82 -0.37 -8.10 15 11 C 0.30 6.39 6.79 -82.74 -0.56 5.83 15 12 N -0.64 -13.89 10.37 -54.68 -0.57 -14.46 15 13 C 0.10 1.89 3.91 -4.89 -0.02 1.87 15 14 H 0.12 1.92 5.41 -51.93 -0.28 1.64 15 15 S -0.16 -2.74 23.14 -107.50 -2.49 -5.23 15 16 C 0.55 9.02 8.91 53.47 0.48 9.50 15 17 O -0.46 -8.23 18.05 5.30 0.10 -8.13 15 18 N -0.68 -10.30 5.05 -14.78 -0.07 -10.37 15 19 C 0.54 9.49 7.86 -11.80 -0.09 9.40 15 20 O -0.47 -9.40 18.02 5.59 0.10 -9.30 15 21 C -0.29 -5.09 9.36 -37.44 -0.35 -5.44 15 22 C 0.13 2.02 11.15 -16.87 -0.19 1.83 15 23 N -0.63 -11.22 4.15 -10.83 -0.04 -11.27 15 24 H 0.40 6.40 4.77 -40.82 -0.19 6.20 15 25 H 0.30 6.17 8.72 -40.82 -0.36 5.82 15 26 H 0.12 2.87 8.06 -52.49 -0.42 2.45 15 27 H 0.41 5.10 8.88 -40.82 -0.36 4.74 15 28 H 0.12 1.92 6.00 -52.48 -0.32 1.60 15 29 H 0.14 1.56 8.06 -52.49 -0.42 1.13 15 LS Contribution 275.33 15.07 4.15 4.15 Total: -1.00 -26.30 275.33 -6.10 -32.41 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -1.60 Total: 13.99 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -2.05 Total: 10.22 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.07 Total: -51.20 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.20 Total: -17.43 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -4.38 Total: 13.10 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.49 Total: -5.23 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.30 -6.10 -32.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163672860.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.408 kcal (2) G-P(sol) polarization free energy of solvation -26.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds