Wall clock time and date at job start Tue Mar 31 2020 00:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30583 * 1 3 3 Si 1.86801 * 119.99945 * 2 1 4 4 H 1.48495 * 109.47221 * 85.28085 * 3 2 1 5 5 H 1.48506 * 109.47255 * 325.28147 * 3 2 1 6 6 H 1.48503 * 109.47101 * 205.28264 * 3 2 1 7 7 C 1.40352 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99737 * 33.15598 * 7 2 1 9 9 C 1.40171 * 119.99951 * 213.16160 * 7 2 1 10 10 C 1.39075 * 119.74060 * 198.19254 * 9 7 2 11 11 C 1.42031 * 118.74106 * 179.73944 * 10 9 7 12 12 N 1.32204 * 120.82823 * 180.27595 * 11 10 9 13 13 C 1.46506 * 119.99528 * 187.85080 * 12 11 10 14 14 H 1.08999 * 110.63174 * 3.35114 * 13 12 11 15 15 S 1.82466 * 110.70650 * 126.47000 * 13 12 11 16 16 C 1.77285 * 94.26101 * 118.37659 * 15 13 12 17 17 O 1.21571 * 126.16149 * 179.97438 * 16 15 13 18 18 N 1.33462 * 107.67251 * 0.02562 * 16 15 13 19 19 C 1.32246 * 121.26357 * 359.97438 * 18 16 15 20 20 O 1.21239 * 123.09917 * 180.02562 * 19 18 16 21 21 C 1.46917 * 118.33037 * 0.51783 * 11 10 9 22 22 C 1.34368 * 119.37190 * 359.73682 * 21 11 10 23 23 N 1.36427 * 121.22383 * 0.02562 * 22 21 11 24 24 H 0.97002 * 119.09027 * 180.02562 * 23 22 21 25 25 H 0.96997 * 119.99935 * 185.09814 * 1 2 3 26 26 H 1.08000 * 120.62790 * 359.97438 * 10 9 7 27 27 H 0.97004 * 119.36784 * 180.02562 * 18 16 15 28 28 H 1.08008 * 120.31053 * 179.71726 * 21 11 10 29 29 H 1.08001 * 119.38863 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.3876 2.1040 1.3953 5 1 1.4907 2.6219 -0.7974 6 1 3.5837 1.4135 -0.5980 7 6 2.0076 -1.2155 0.0005 8 1 1.5995 -2.0748 -0.5106 9 6 3.2381 -1.3140 0.6646 10 6 4.1033 -2.3601 0.3625 11 6 5.3470 -2.4363 1.0442 12 7 6.2029 -3.4101 0.7854 13 6 7.3998 -3.5728 1.6146 14 1 7.4023 -2.8509 2.4312 15 16 7.5116 -5.2763 2.2587 16 6 9.0475 -5.6244 1.4444 17 8 9.6662 -6.6696 1.4963 18 7 9.4027 -4.5319 0.7652 19 6 8.6531 -3.4424 0.7770 20 8 8.9433 -2.4325 0.1724 21 6 5.6561 -1.4088 2.0478 22 6 4.7649 -0.4320 2.2870 23 7 3.5785 -0.3772 1.6157 24 1 2.9580 0.3419 1.8127 25 1 -0.4850 -0.8367 0.0746 26 1 3.8362 -3.0984 -0.3791 27 1 10.2261 -4.5372 0.2523 28 1 6.5907 -1.4385 2.5884 29 1 4.9917 0.3232 3.0251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163672860.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:07 Heat of formation + Delta-G solvation = -38.926090 kcal Electronic energy + Delta-G solvation = -18425.503723 eV Core-core repulsion = 15246.432280 eV Total energy + Delta-G solvation = -3179.071444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.046 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.37485 -40.68650 -39.98906 -36.93982 -36.65227 -35.62909 -32.71727 -31.72775 -28.75366 -27.23583 -25.94569 -23.43580 -23.35211 -21.82671 -20.41494 -19.57630 -19.34237 -19.13361 -18.03406 -17.36148 -16.91004 -16.52928 -16.30328 -16.15427 -15.75355 -15.24947 -15.10786 -14.82308 -14.32275 -14.13553 -13.21596 -13.01094 -12.91413 -12.72943 -12.49411 -12.16270 -11.95591 -11.80908 -11.56824 -11.18168 -11.01649 -10.25374 -9.99611 -9.68988 -9.42692 -8.14983 -6.85411 -0.29605 -0.05250 0.38043 0.78936 0.93774 1.25702 1.40502 1.47353 1.69377 1.75869 1.98539 2.37496 2.45819 2.91614 3.40751 3.71593 3.91171 4.13255 4.52222 4.61192 4.71169 4.83816 5.19648 5.21940 5.38732 5.42152 5.64742 5.74338 5.81702 6.08869 6.19988 6.37699 6.63340 6.78315 7.46794 7.60730 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.037681 B = 0.004221 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.908627 B = 6632.549445 C = 6894.006749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.019 3.981 3 Si 1.065 2.935 4 H -0.218 1.218 5 H -0.263 1.263 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.308 3.692 10 C -0.383 4.383 11 C 0.286 3.714 12 N -0.673 5.673 13 C 0.098 3.902 14 H 0.139 0.861 15 S -0.153 6.153 16 C 0.560 3.440 17 O -0.471 6.471 18 N -0.666 5.666 19 C 0.544 3.456 20 O -0.493 6.493 21 C -0.309 4.309 22 C 0.151 3.849 23 N -0.626 5.626 24 H 0.409 0.591 25 H 0.296 0.704 26 H 0.089 0.911 27 H 0.425 0.575 28 H 0.149 0.851 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.355 4.718 7.134 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.205 4.205 3 Si 0.881 3.119 4 H -0.142 1.142 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.095 0.905 9 C 0.200 3.800 10 C -0.413 4.413 11 C 0.130 3.870 12 N -0.408 5.408 13 C -0.128 4.128 14 H 0.155 0.845 15 S 0.074 5.926 16 C 0.240 3.760 17 O -0.348 6.348 18 N -0.334 5.334 19 C 0.328 3.672 20 O -0.365 6.365 21 C -0.338 4.338 22 C 0.024 3.976 23 N -0.240 5.240 24 H 0.249 0.751 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.267 0.733 28 H 0.167 0.833 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.876 4.791 7.102 10.985 hybrid contribution 0.718 -0.999 -0.861 1.501 sum 7.594 3.792 6.241 10.535 Atomic orbital electron populations 1.70455 1.09064 1.34035 1.25405 1.28538 0.95655 1.06540 0.89781 0.83830 0.75609 0.70775 0.81656 1.14192 1.18756 1.19065 1.20512 1.03177 1.00692 1.31813 0.90538 1.17497 0.91156 0.85740 0.85560 1.20001 0.96764 1.08204 1.16314 1.20536 0.91030 0.87874 0.87511 1.74027 1.05777 1.29695 1.31337 1.23961 0.94873 0.94762 0.99252 0.84459 1.87797 1.24031 1.21698 1.59051 1.21750 0.89604 0.84051 0.80610 1.90889 1.57376 1.25088 1.61407 1.44201 1.27390 1.14100 1.47738 1.20548 0.84333 0.81849 0.80440 1.90769 1.72972 1.30293 1.42454 1.22460 1.03185 1.00703 1.07455 1.22151 0.83808 0.98080 0.93551 1.42293 1.18783 1.27750 1.35192 0.75135 0.89256 0.89237 0.73346 0.83325 0.77430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -32.67 13.64 21.89 0.30 -32.37 15 2 C 0.02 0.79 5.24 85.39 0.45 1.23 15 3 Si 1.07 32.86 25.77 68.60 1.77 34.63 15 4 H -0.22 -4.95 6.67 99.48 0.66 -4.28 15 5 H -0.26 -8.09 7.11 99.48 0.71 -7.39 15 6 H -0.27 -8.74 7.11 99.48 0.71 -8.03 15 7 C -0.53 -23.87 9.29 23.25 0.22 -23.65 15 8 H 0.08 3.81 8.06 -2.91 -0.02 3.78 15 9 C 0.31 13.13 5.97 38.88 0.23 13.36 15 10 C -0.38 -18.03 9.83 23.41 0.23 -17.80 15 11 C 0.29 12.31 6.79 42.30 0.29 12.60 15 12 N -0.67 -29.37 10.37 -326.91 -3.39 -32.76 15 13 C 0.10 3.44 3.91 85.82 0.34 3.77 15 14 H 0.14 4.19 5.41 -2.39 -0.01 4.18 15 15 S -0.15 -5.04 23.14 -56.49 -1.31 -6.34 15 16 C 0.56 17.33 8.91 130.00 1.16 18.49 15 17 O -0.47 -15.89 18.05 -3.94 -0.07 -15.97 15 18 N -0.67 -18.91 5.05 -439.47 -2.22 -21.12 15 19 C 0.54 18.39 7.86 88.24 0.69 19.08 15 20 O -0.49 -18.98 18.02 -2.90 -0.05 -19.03 15 21 C -0.31 -10.16 9.36 23.66 0.22 -9.94 15 22 C 0.15 4.07 11.15 83.09 0.93 4.99 15 23 N -0.63 -20.61 4.15 -188.19 -0.78 -21.40 15 24 H 0.41 11.56 4.77 -92.71 -0.44 11.12 15 25 H 0.30 12.55 8.72 -92.71 -0.81 11.74 15 26 H 0.09 4.62 8.06 -2.91 -0.02 4.59 15 27 H 0.42 9.71 8.88 -92.71 -0.82 8.89 15 28 H 0.15 4.04 6.00 -2.91 -0.02 4.02 15 29 H 0.21 2.95 8.06 -2.91 -0.02 2.93 15 Total: -1.00 -59.56 275.33 -1.11 -60.66 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.10 Total: 31.55 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 4.75 Total: 22.14 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -6.09 Total: -107.64 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.12 Total: -35.00 kcal Atomic # 14 Polarization: 32.86 SS G_CDS: 1.77 Total: 34.63 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -1.31 Total: -6.34 kcal Total: -59.56 -1.11 -60.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163672860.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.739 kcal (2) G-P(sol) polarization free energy of solvation -59.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds