Wall clock time and date at job start Tue Mar 31 2020 00:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48719 * 111.00239 * 2 1 4 4 H 1.08998 * 112.74417 * 44.44191 * 3 2 1 5 5 C 1.54611 * 104.22012 * 282.48755 * 3 2 1 6 6 C 1.54286 * 104.84277 * 334.81821 * 5 3 2 7 7 C 1.48719 * 111.00106 * 245.52884 * 2 1 3 8 8 H 1.08994 * 112.23755 * 315.84084 * 7 2 1 9 9 C 1.53714 * 107.23923 * 191.65217 * 7 2 1 10 10 C 1.53131 * 108.89212 * 295.91732 * 9 7 2 11 11 H 1.09003 * 109.38658 * 293.95883 * 10 9 7 12 12 N 1.46905 * 109.42747 * 174.09191 * 10 9 7 13 13 C 1.46901 * 110.99870 * 84.73758 * 12 10 9 14 14 H 1.09007 * 109.41019 * 324.85425 * 13 12 10 15 15 C 1.52957 * 109.41452 * 84.64389 * 13 12 10 16 16 C 1.53225 * 109.40369 * 183.70146 * 15 13 12 17 17 C 1.51267 * 108.53917 * 305.37472 * 16 15 13 18 18 C 1.37875 * 120.85421 * 231.32333 * 17 16 15 19 19 N 1.31510 * 120.00361 * 180.02562 * 18 17 16 20 20 Si 1.86805 * 119.99619 * 0.02633 * 18 17 16 21 21 H 1.48499 * 109.47501 * 89.99738 * 20 18 17 22 22 H 1.48507 * 109.46773 * 209.99835 * 20 18 17 23 23 H 1.48498 * 109.46929 * 329.99255 * 20 18 17 24 24 C 1.51268 * 118.30040 * 51.34791 * 17 16 15 25 25 C 1.52957 * 109.41091 * 205.00009 * 13 12 10 26 26 C 1.53134 * 109.73129 * 54.01219 * 10 9 7 27 27 H 1.09002 * 109.47180 * 60.00472 * 1 2 3 28 28 H 1.09003 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47559 * 300.00176 * 1 2 3 30 30 H 1.08993 * 110.36693 * 93.66502 * 5 3 2 31 31 H 1.09001 * 110.36124 * 215.87447 * 5 3 2 32 32 H 1.09001 * 110.36077 * 118.84125 * 6 5 3 33 33 H 1.09002 * 110.36557 * 241.04745 * 6 5 3 34 34 H 1.08998 * 109.56414 * 176.08605 * 9 7 2 35 35 H 1.09002 * 109.56405 * 55.73797 * 9 7 2 36 36 H 1.00901 * 110.99869 * 320.78469 * 12 10 9 37 37 H 1.08997 * 109.48451 * 303.68698 * 15 13 12 38 38 H 1.09002 * 109.47842 * 63.72555 * 15 13 12 39 39 H 1.09000 * 109.62755 * 185.66137 * 16 15 13 40 40 H 1.09001 * 109.78481 * 65.18162 * 16 15 13 41 41 H 0.97006 * 120.00201 * 180.02562 * 19 18 17 42 42 H 1.08996 * 109.63142 * 188.93755 * 24 17 16 43 43 H 1.09000 * 109.78308 * 68.45743 * 24 17 16 44 44 H 1.08998 * 109.48258 * 296.27642 * 25 13 12 45 45 H 1.08997 * 109.48464 * 56.31552 * 25 13 12 46 46 H 1.09002 * 109.57059 * 65.80803 * 26 10 9 47 47 H 1.08998 * 109.57184 * 186.16074 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4830 2.0390 0.7038 5 6 1.8355 1.8591 -1.4633 6 6 1.8355 0.5617 -2.2982 7 6 2.0019 -0.5751 -1.2637 8 1 1.4740 -1.4818 -1.5591 9 6 3.5075 -0.8077 -1.0589 10 6 4.1937 0.5446 -0.8462 11 1 4.1253 1.1330 -1.7612 12 7 5.6070 0.3277 -0.5092 13 6 6.4194 0.1704 -1.7230 14 1 5.8390 -0.3543 -2.4819 15 6 6.8159 1.5499 -2.2517 16 6 7.5844 1.3891 -3.5676 17 6 8.7493 0.4531 -3.3329 18 6 10.0278 0.8075 -3.7079 19 7 11.0283 -0.0194 -3.4964 20 14 10.3389 2.4625 -4.5166 21 1 10.6310 3.4768 -3.4720 22 1 11.4983 2.3529 -5.4381 23 1 9.1349 2.8732 -5.2826 24 6 8.4755 -0.8821 -2.6767 25 6 7.6747 -0.6390 -1.3931 26 6 3.5075 1.2984 0.2966 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.8912 2.3893 -1.5861 31 1 2.6693 2.4986 -1.7531 32 1 0.8911 0.4539 -2.8316 33 1 2.6691 0.5627 -3.0006 34 1 3.9248 -1.2943 -1.9405 35 1 3.6637 -1.4381 -0.1835 36 1 5.7149 -0.4666 0.1036 37 1 5.9189 2.1444 -2.4249 38 1 7.4491 2.0515 -1.5199 39 1 7.9553 2.3600 -3.8959 40 1 6.9270 0.9713 -4.3301 41 1 11.9279 0.2301 -3.7599 42 1 9.4189 -1.3705 -2.4326 43 1 7.9002 -1.5144 -3.3529 44 1 8.2875 -0.0856 -0.6816 45 1 7.3864 -1.5957 -0.9578 46 1 3.6637 0.7628 1.2330 47 1 3.9249 2.3023 0.3743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169089894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:37 Heat of formation + Delta-G solvation = -26.028201 kcal Electronic energy + Delta-G solvation = -23242.063561 eV Core-core repulsion = 20229.556830 eV Total energy + Delta-G solvation = -3012.506731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84075 -39.11332 -36.24861 -34.03087 -32.47112 -32.20932 -31.51097 -30.82969 -28.21058 -26.32149 -25.14436 -23.79642 -23.26311 -22.36384 -21.38119 -20.79678 -19.62552 -18.06485 -17.37534 -17.08320 -16.40266 -15.89344 -15.41722 -15.21488 -15.07112 -14.85628 -14.44093 -14.32019 -14.01943 -13.94163 -13.68358 -13.52163 -13.41420 -13.13042 -12.90228 -12.70849 -12.58612 -12.49360 -12.37291 -11.94380 -11.85546 -11.81465 -11.73792 -11.49357 -11.33923 -11.24719 -11.11817 -10.72866 -10.53571 -10.45492 -9.44670 -9.14864 -8.16101 -6.09514 1.38385 1.40520 1.49562 2.41486 2.98877 3.08329 3.32275 3.73550 3.77200 3.92704 4.11295 4.18011 4.21287 4.25975 4.32928 4.41213 4.44396 4.47779 4.57491 4.61503 4.70185 4.78644 4.84419 4.85185 4.96418 4.99115 5.02005 5.06194 5.07554 5.12581 5.13099 5.17718 5.25226 5.28500 5.30372 5.31997 5.35945 5.48268 5.63813 5.64619 5.77869 5.90361 5.92659 6.19765 6.34118 6.38066 6.65008 6.96806 7.48172 8.95227 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.033794 B = 0.004172 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.353636 B = 6709.041427 C = 7019.885474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.517 5.517 3 C 0.066 3.934 4 H 0.106 0.894 5 C -0.148 4.148 6 C -0.149 4.149 7 C 0.069 3.931 8 H 0.097 0.903 9 C -0.131 4.131 10 C 0.091 3.909 11 H 0.069 0.931 12 N -0.685 5.685 13 C 0.116 3.884 14 H 0.027 0.973 15 C -0.084 4.084 16 C -0.018 4.018 17 C -0.496 4.496 18 C 0.019 3.981 19 N -0.934 5.934 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.292 1.292 23 H -0.254 1.254 24 C 0.008 3.992 25 C -0.098 4.098 26 C -0.088 4.088 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.339 0.661 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.016 0.984 41 H 0.262 0.738 42 H 0.024 0.976 43 H -0.004 1.004 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.829 2.234 6.112 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.239 5.239 3 C -0.043 4.043 4 H 0.124 0.876 5 C -0.187 4.187 6 C -0.188 4.188 7 C -0.040 4.040 8 H 0.115 0.885 9 C -0.170 4.170 10 C -0.019 4.019 11 H 0.087 0.913 12 N -0.315 5.315 13 C 0.007 3.993 14 H 0.045 0.955 15 C -0.123 4.123 16 C -0.056 4.056 17 C -0.516 4.516 18 C -0.179 4.179 19 N -0.574 5.574 20 Si 0.768 3.232 21 H -0.200 1.200 22 H -0.218 1.218 23 H -0.178 1.178 24 C -0.030 4.030 25 C -0.136 4.136 26 C -0.126 4.126 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.158 0.842 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.015 0.985 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.337 2.567 6.665 22.500 hybrid contribution 0.399 0.036 -1.606 1.655 sum -20.938 2.603 5.059 21.697 Atomic orbital electron populations 1.22494 0.87348 1.02421 1.01279 1.65416 1.08848 1.15648 1.34010 1.23091 0.95464 0.89685 0.96086 0.87637 1.22915 1.02348 0.97599 0.95808 1.22913 1.02055 0.95204 0.98667 1.22964 0.94974 0.97626 0.88461 0.88472 1.22352 0.95074 0.98280 1.01316 1.21721 0.86460 0.95312 0.98408 0.91287 1.60644 1.07540 1.47057 1.16292 1.21099 0.92513 0.95500 0.90190 0.95516 1.21416 0.97811 0.95920 0.97109 1.19780 0.95381 0.95839 0.94604 1.20654 0.91936 1.01899 1.37075 1.25629 0.95743 1.00154 0.96361 1.69978 1.00230 1.37972 1.49222 0.85795 0.77564 0.80850 0.79028 1.19964 1.21841 1.17824 1.19313 0.95318 0.95401 0.92943 1.21604 0.96226 0.97397 0.98373 1.21584 0.92945 1.00118 0.97978 0.94854 0.91082 0.90683 0.90769 0.91433 0.90923 0.91988 0.92865 0.91430 0.84189 0.93320 0.93923 0.95236 0.96563 0.92887 0.95775 0.98517 0.94055 0.93456 0.91697 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.45 127.69 1.21 1.39 16 2 N -0.52 -9.76 5.29 -853.45 -4.51 -14.27 16 3 C 0.07 1.22 3.67 45.35 0.17 1.39 16 4 H 0.11 1.67 8.11 -2.39 -0.02 1.65 16 5 C -0.15 -2.68 5.32 31.58 0.17 -2.51 16 6 C -0.15 -2.85 5.28 31.58 0.17 -2.68 16 7 C 0.07 1.37 3.68 45.35 0.17 1.54 16 8 H 0.10 1.76 8.10 -2.39 -0.02 1.74 16 9 C -0.13 -3.10 4.87 30.88 0.15 -2.95 16 10 C 0.09 2.34 1.91 45.00 0.09 2.43 16 11 H 0.07 1.94 4.44 -2.39 -0.01 1.93 16 12 N -0.69 -21.13 6.05 -469.13 -2.84 -23.96 16 13 C 0.12 4.35 2.20 44.89 0.10 4.45 16 14 H 0.03 1.03 7.15 -2.38 -0.02 1.01 16 15 C -0.08 -3.41 5.43 30.66 0.17 -3.24 16 16 C -0.02 -0.83 5.59 30.10 0.17 -0.67 16 17 C -0.50 -26.71 5.51 -16.17 -0.09 -26.80 16 18 C 0.02 1.06 5.46 84.65 0.46 1.52 16 19 N -0.93 -56.07 12.73 21.45 0.27 -55.80 16 20 Si 0.94 44.16 27.27 68.60 1.87 46.03 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.25 -11.22 6.46 99.48 0.64 -10.57 16 24 C 0.01 0.43 5.97 30.11 0.18 0.60 16 25 C -0.10 -4.16 5.24 30.66 0.16 -4.00 16 26 C -0.09 -1.98 5.23 30.88 0.16 -1.81 16 27 H 0.03 0.45 6.88 -2.39 -0.02 0.44 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.07 1.37 7.04 -2.39 -0.02 1.35 16 32 H 0.07 1.21 8.01 -2.39 -0.02 1.19 16 33 H 0.06 1.37 7.04 -2.39 -0.02 1.35 16 34 H 0.05 1.38 7.50 -2.39 -0.02 1.36 16 35 H 0.07 1.64 8.03 -2.39 -0.02 1.62 16 36 H 0.34 9.94 7.97 -89.69 -0.71 9.22 16 37 H 0.05 1.75 7.35 -2.39 -0.02 1.74 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.03 1.34 4.78 -2.39 -0.01 1.33 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 42 H 0.02 1.37 7.07 -2.39 -0.02 1.35 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 46 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -59.62 335.93 -1.63 -61.25 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.16 Total: 18.09 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.42 Total: -31.34 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -7.08 Total: -94.03 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.87 Total: 46.03 kcal Total: -59.62 -1.63 -61.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169089894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.220 kcal (2) G-P(sol) polarization free energy of solvation -59.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds