Wall clock time and date at job start Tue Mar 31 2020 00:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36897 * 120.00434 * 2 1 4 4 H 1.07991 * 120.00226 * 207.70978 * 3 2 1 5 5 C 1.39000 * 119.99367 * 27.43215 * 3 2 1 6 6 N 1.31410 * 119.99572 * 214.89662 * 5 3 2 7 7 Si 1.86792 * 120.00245 * 34.90096 * 5 3 2 8 8 H 1.48502 * 109.47197 * 95.52022 * 7 5 3 9 9 H 1.48501 * 109.47348 * 215.52103 * 7 5 3 10 10 H 1.48500 * 109.47325 * 335.52109 * 7 5 3 11 11 C 1.34774 * 119.99841 * 179.97438 * 2 1 3 12 12 O 1.21767 * 119.99987 * 184.82402 * 11 2 1 13 13 C 1.46325 * 120.00006 * 4.82599 * 11 2 1 14 14 C 1.36854 * 125.44431 * 183.03372 * 13 11 2 15 15 C 1.37423 * 113.28445 * 180.02562 * 14 13 11 16 16 Cl 1.73594 * 122.46816 * 180.02562 * 15 14 13 17 17 C 1.34104 * 115.06219 * 359.97438 * 15 14 13 18 18 Cl 1.73598 * 124.52398 * 179.97438 * 17 15 14 19 19 S 1.70615 * 110.95648 * 359.73369 * 17 15 14 20 20 H 1.09006 * 109.46639 * 355.00073 * 1 2 3 21 21 H 1.08993 * 109.47408 * 114.99913 * 1 2 3 22 22 H 1.08995 * 109.47154 * 235.00571 * 1 2 3 23 23 H 0.96998 * 120.00186 * 180.02562 * 6 5 3 24 24 H 1.07999 * 123.35672 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1855 0.0000 4 1 3.1366 1.2391 -0.4349 5 6 1.5718 2.3216 0.5546 6 7 1.8018 3.5015 0.0239 7 14 0.4684 2.1711 2.0543 8 1 1.2650 2.4224 3.2822 9 1 -0.6289 3.1675 1.9636 10 1 -0.1081 0.8036 2.1095 11 6 2.1388 -1.1672 0.0005 12 8 3.3533 -1.1691 0.0892 13 6 1.4111 -2.4322 -0.1055 14 6 1.9745 -3.6784 -0.0572 15 6 1.0577 -4.6944 -0.1826 16 17 1.5128 -6.3693 -0.1531 17 6 -0.2147 -4.2965 -0.3283 18 17 -1.5669 -5.3703 -0.5073 19 16 -0.3279 -2.5943 -0.3077 20 1 -0.3633 1.0238 0.0896 21 1 -0.3634 -0.4343 -0.9313 22 1 -0.3633 -0.5893 0.8418 23 1 1.3990 4.2944 0.4111 24 1 3.0341 -3.8467 0.0672 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195171840.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:28 Heat of formation + Delta-G solvation = 5.027789 kcal Electronic energy + Delta-G solvation = -14986.821328 eV Core-core repulsion = 12079.806337 eV Total energy + Delta-G solvation = -2907.014991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 278.963 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.08127 -37.92463 -36.59681 -35.90015 -34.94379 -32.49478 -29.45411 -26.94447 -25.94757 -23.97630 -20.93448 -19.00347 -17.85036 -17.39770 -16.20035 -15.86375 -15.40557 -14.85432 -14.02948 -13.85724 -13.54995 -13.24319 -12.79821 -12.74261 -12.50027 -12.08578 -11.86331 -11.28447 -11.17140 -11.08594 -10.96411 -10.83873 -10.36061 -10.03623 -9.37393 -8.89230 -8.57327 -8.37831 -8.10594 -6.83861 -4.10091 0.49298 1.14418 1.57700 2.09690 2.27831 2.67112 2.90576 3.04250 3.11290 3.81465 3.86462 4.13249 4.70569 5.11825 5.18074 5.44355 5.68775 5.73324 5.97956 6.02146 6.22560 7.12295 7.91328 8.14062 8.63750 8.95303 9.45874 10.25123 Molecular weight = 278.96amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.005676 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.463449 B = 4931.949498 C = 5512.221338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.435 5.435 3 C -0.314 4.314 4 H 0.118 0.882 5 C 0.066 3.934 6 N -0.819 5.819 7 Si 0.855 3.145 8 H -0.272 1.272 9 H -0.276 1.276 10 H -0.252 1.252 11 C 0.499 3.501 12 O -0.557 6.557 13 C -0.194 4.194 14 C -0.093 4.093 15 C -0.034 4.034 16 Cl -0.049 7.049 17 C -0.224 4.224 18 Cl -0.014 7.014 19 S 0.276 5.724 20 H 0.094 0.906 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.281 0.719 24 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 -11.989 -0.043 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.153 5.153 3 C -0.441 4.441 4 H 0.135 0.865 5 C -0.146 4.146 6 N -0.451 5.451 7 Si 0.679 3.321 8 H -0.198 1.198 9 H -0.201 1.201 10 H -0.176 1.176 11 C 0.290 3.710 12 O -0.442 6.442 13 C -0.317 4.317 14 C -0.124 4.124 15 C -0.076 4.076 16 Cl -0.021 7.021 17 C -0.369 4.369 18 Cl 0.014 6.986 19 S 0.542 5.458 20 H 0.113 0.887 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.451 -11.014 -0.163 14.514 hybrid contribution 0.393 -1.323 0.910 1.653 sum -9.058 -12.337 0.747 15.324 Atomic orbital electron populations 1.22258 0.83331 1.03447 1.00580 1.43686 1.04128 1.05886 1.61559 1.19191 1.04457 0.82301 1.38153 0.86471 1.25357 0.97085 0.94570 0.97539 1.69930 1.40275 0.99468 1.35439 0.87376 0.80425 0.79616 0.84706 1.19798 1.20096 1.17602 1.16519 0.87242 0.81094 0.86171 1.90732 1.12346 1.85387 1.55747 1.25099 0.95967 0.99090 1.11511 1.20155 1.01113 0.88465 1.02713 1.19517 0.91815 0.87381 1.08850 1.98345 1.92677 1.14007 1.97047 1.25457 0.92268 1.01388 1.17827 1.98339 1.41179 1.62889 1.96147 1.83968 1.04325 0.91035 1.66438 0.88731 0.92020 0.91588 0.90801 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 6.58 59.85 0.39 1.30 14 2 N -0.43 -9.99 2.72 -123.81 -0.34 -10.32 14 3 C -0.31 -8.22 9.40 -15.01 -0.14 -8.36 14 4 H 0.12 3.46 7.75 -52.49 -0.41 3.05 14 5 C 0.07 1.64 4.90 -17.45 -0.09 1.55 14 6 N -0.82 -21.23 13.96 55.50 0.77 -20.46 14 7 Si 0.86 17.95 26.21 -169.99 -4.46 13.50 14 8 H -0.27 -5.96 7.11 56.52 0.40 -5.56 14 9 H -0.28 -5.54 7.11 56.52 0.40 -5.14 14 10 H -0.25 -4.87 5.07 56.52 0.29 -4.58 14 11 C 0.50 11.51 7.58 -13.01 -0.10 11.41 14 12 O -0.56 -14.86 16.63 5.13 0.09 -14.77 14 13 C -0.19 -3.61 6.31 -36.83 -0.23 -3.84 14 14 C -0.09 -1.59 9.89 -40.38 -0.40 -1.99 14 15 C -0.03 -0.52 6.25 -41.33 -0.26 -0.78 14 16 Cl -0.05 -0.68 28.58 -51.86 -1.48 -2.16 14 17 C -0.22 -3.27 6.82 29.28 0.20 -3.07 14 18 Cl -0.01 -0.18 28.72 -51.86 -1.49 -1.67 14 19 S 0.28 4.06 17.59 -107.50 -1.89 2.16 14 20 H 0.09 1.73 4.76 -51.93 -0.25 1.48 14 21 H 0.06 0.97 6.29 -40.65 -0.26 0.71 14 22 H 0.07 1.09 5.69 -46.69 -0.27 0.82 14 23 H 0.28 6.65 8.31 -40.82 -0.34 6.31 14 24 H 0.16 2.76 8.06 -52.49 -0.42 2.34 14 LS Contribution 252.27 15.07 3.80 3.80 Total: -1.00 -27.79 252.27 -6.46 -34.26 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -0.85 Total: -0.57 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.62 Total: -3.77 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.44 Total: -30.78 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.09 Total: -14.77 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -4.46 Total: 13.50 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.89 Total: 2.16 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -2.97 Total: -3.83 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.79 -6.46 -34.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195171840.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.284 kcal (2) G-P(sol) polarization free energy of solvation -27.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds