Wall clock time and date at job start Tue Mar 31 2020 00:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36897 * 120.00434 * 2 1 4 4 H 1.07991 * 120.00226 * 207.70978 * 3 2 1 5 5 C 1.39000 * 119.99367 * 27.43215 * 3 2 1 6 6 N 1.31410 * 119.99572 * 214.89662 * 5 3 2 7 7 Si 1.86792 * 120.00245 * 34.90096 * 5 3 2 8 8 H 1.48502 * 109.47197 * 95.52022 * 7 5 3 9 9 H 1.48501 * 109.47348 * 215.52103 * 7 5 3 10 10 H 1.48500 * 109.47325 * 335.52109 * 7 5 3 11 11 C 1.34774 * 119.99841 * 179.97438 * 2 1 3 12 12 O 1.21767 * 119.99987 * 184.82402 * 11 2 1 13 13 C 1.46325 * 120.00006 * 4.82599 * 11 2 1 14 14 C 1.36854 * 125.44431 * 183.03372 * 13 11 2 15 15 C 1.37423 * 113.28445 * 180.02562 * 14 13 11 16 16 Cl 1.73594 * 122.46816 * 180.02562 * 15 14 13 17 17 C 1.34104 * 115.06219 * 359.97438 * 15 14 13 18 18 Cl 1.73598 * 124.52398 * 179.97438 * 17 15 14 19 19 S 1.70615 * 110.95648 * 359.73369 * 17 15 14 20 20 H 1.09006 * 109.46639 * 355.00073 * 1 2 3 21 21 H 1.08993 * 109.47408 * 114.99913 * 1 2 3 22 22 H 1.08995 * 109.47154 * 235.00571 * 1 2 3 23 23 H 0.96998 * 120.00186 * 180.02562 * 6 5 3 24 24 H 1.07999 * 123.35672 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1855 0.0000 4 1 3.1366 1.2391 -0.4349 5 6 1.5718 2.3216 0.5546 6 7 1.8018 3.5015 0.0239 7 14 0.4684 2.1711 2.0543 8 1 1.2650 2.4224 3.2822 9 1 -0.6289 3.1675 1.9636 10 1 -0.1081 0.8036 2.1095 11 6 2.1388 -1.1672 0.0005 12 8 3.3533 -1.1691 0.0892 13 6 1.4111 -2.4322 -0.1055 14 6 1.9745 -3.6784 -0.0572 15 6 1.0577 -4.6944 -0.1826 16 17 1.5128 -6.3693 -0.1531 17 6 -0.2147 -4.2965 -0.3283 18 17 -1.5669 -5.3703 -0.5073 19 16 -0.3279 -2.5943 -0.3077 20 1 -0.3633 1.0238 0.0896 21 1 -0.3634 -0.4343 -0.9313 22 1 -0.3633 -0.5893 0.8418 23 1 1.3990 4.2944 0.4111 24 1 3.0341 -3.8467 0.0672 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195171840.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:28 Heat of formation + Delta-G solvation = -12.664847 kcal Electronic energy + Delta-G solvation = -14987.588539 eV Core-core repulsion = 12079.806337 eV Total energy + Delta-G solvation = -2907.782201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 278.963 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76925 -39.25610 -37.75649 -37.21065 -36.68143 -34.34430 -30.90633 -28.51391 -27.58856 -25.47708 -22.46686 -20.38909 -19.48113 -19.12711 -17.74310 -17.32792 -16.93497 -16.44233 -15.65015 -15.26224 -14.82461 -14.80074 -14.47696 -14.22875 -14.20447 -13.59672 -12.98396 -12.74481 -12.71829 -12.47258 -12.31648 -12.14753 -11.73024 -11.57073 -11.17060 -10.72569 -10.12386 -9.77111 -9.54561 -8.69619 -6.08606 -0.83251 -0.13584 0.31950 0.84351 0.91480 1.24279 1.39794 1.43114 1.45788 2.07556 2.16446 2.47679 2.90434 3.64572 3.82505 4.03216 4.28744 4.33287 4.55652 4.66208 4.85791 5.35098 5.93248 6.33749 6.77616 7.10061 7.66136 8.45468 Molecular weight = 278.96amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.005676 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.463449 B = 4931.949498 C = 5512.221338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.448 5.448 3 C -0.351 4.351 4 H 0.057 0.943 5 C 0.030 3.970 6 N -0.868 5.868 7 Si 0.920 3.080 8 H -0.287 1.287 9 H -0.255 1.255 10 H -0.221 1.221 11 C 0.502 3.498 12 O -0.609 6.609 13 C -0.241 4.241 14 C -0.072 4.072 15 C -0.051 4.051 16 Cl -0.032 7.032 17 C -0.208 4.208 18 Cl 0.015 6.985 19 S 0.355 5.645 20 H 0.096 0.904 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.288 0.712 24 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.216 -14.435 0.691 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.166 5.166 3 C -0.479 4.479 4 H 0.075 0.925 5 C -0.178 4.178 6 N -0.501 5.501 7 Si 0.740 3.260 8 H -0.213 1.213 9 H -0.179 1.179 10 H -0.143 1.143 11 C 0.293 3.707 12 O -0.497 6.497 13 C -0.362 4.362 14 C -0.105 4.105 15 C -0.092 4.092 16 Cl -0.003 7.003 17 C -0.355 4.355 18 Cl 0.043 6.957 19 S 0.622 5.378 20 H 0.114 0.886 21 H 0.106 0.894 22 H 0.108 0.892 23 H 0.099 0.901 24 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.983 -13.453 0.556 18.704 hybrid contribution 1.443 -0.904 0.575 1.797 sum -11.539 -14.357 1.131 18.454 Atomic orbital electron populations 1.22498 0.80340 1.04458 1.03005 1.43651 1.05961 1.04659 1.62351 1.18654 1.03458 0.84599 1.41139 0.92517 1.26040 0.98849 0.93531 0.99337 1.69984 1.42687 1.00480 1.36994 0.86377 0.78835 0.81731 0.79019 1.21350 1.17862 1.14317 1.17110 0.86945 0.82507 0.84097 1.90680 1.15013 1.86751 1.57251 1.24593 0.99127 0.97225 1.15281 1.20249 1.01385 0.88621 1.00265 1.19396 0.91776 0.88075 1.09951 1.98355 1.92637 1.12321 1.97021 1.25746 0.92939 1.02293 1.14505 1.98369 1.39525 1.62017 1.95769 1.83559 0.99736 0.90185 1.64291 0.88606 0.89373 0.89153 0.90131 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 6.58 127.77 0.84 2.25 14 2 N -0.45 -20.89 2.72 -663.83 -1.80 -22.70 14 3 C -0.35 -19.50 9.40 84.09 0.79 -18.71 14 4 H 0.06 3.72 7.75 -2.91 -0.02 3.69 14 5 C 0.03 1.55 4.90 84.94 0.42 1.97 14 6 N -0.87 -46.99 13.96 21.67 0.30 -46.69 14 7 Si 0.92 36.60 26.21 68.60 1.80 38.40 14 8 H -0.29 -12.06 7.11 99.48 0.71 -11.36 14 9 H -0.25 -9.22 7.11 99.48 0.71 -8.51 14 10 H -0.22 -7.54 5.07 99.48 0.50 -7.04 14 11 C 0.50 23.63 7.58 86.35 0.65 24.28 14 12 O -0.61 -34.29 16.63 -4.56 -0.08 -34.36 14 13 C -0.24 -8.58 6.31 24.05 0.15 -8.42 14 14 C -0.07 -2.36 9.89 21.75 0.22 -2.14 14 15 C -0.05 -1.40 6.25 21.13 0.13 -1.27 14 16 Cl -0.03 -0.78 28.58 -2.72 -0.08 -0.86 14 17 C -0.21 -5.23 6.82 66.88 0.46 -4.77 14 18 Cl 0.01 0.30 28.72 -2.72 -0.08 0.23 14 19 S 0.36 9.00 17.59 -56.49 -0.99 8.01 14 20 H 0.10 3.27 4.76 -2.38 -0.01 3.25 14 21 H 0.09 2.48 6.29 -9.56 -0.06 2.42 14 22 H 0.09 2.59 5.69 -5.72 -0.03 2.56 14 23 H 0.29 14.06 8.31 -92.71 -0.77 13.29 14 24 H 0.16 5.26 8.06 -2.91 -0.02 5.24 14 Total: -1.00 -64.98 252.27 3.73 -61.25 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.00 Total: 3.54 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 3.66 Total: -6.81 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.50 Total: -69.39 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.08 Total: -34.36 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 1.80 Total: 38.40 kcal Atomic # 16 Polarization: 9.00 SS G_CDS: -0.99 Total: 8.01 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.16 Total: -0.63 kcal Total: -64.98 3.73 -61.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195171840.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.589 kcal (2) G-P(sol) polarization free energy of solvation -64.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds