Wall clock time and date at job start Tue Mar 31 2020 00:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.39402 * 119.51567 * 269.73009 * 13 10 9 15 15 C 1.36072 * 120.96643 * 179.70689 * 14 13 10 16 16 C 1.40580 * 119.71328 * 0.56094 * 15 14 13 17 17 N 1.33749 * 121.09930 * 179.67652 * 16 15 14 18 18 C 1.31334 * 119.71178 * 180.02562 * 17 16 15 19 19 C 1.39680 * 120.70569 * 0.02562 * 18 17 16 20 20 N 1.31331 * 120.71206 * 0.02562 * 19 18 17 21 21 C 1.33743 * 119.71156 * 359.97438 * 20 19 18 22 22 C 1.36063 * 119.51236 * 90.00017 * 13 10 9 23 23 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 25 25 H 1.07997 * 119.52126 * 0.02562 * 14 13 10 26 26 H 1.07995 * 120.13961 * 180.25633 * 15 14 13 27 27 H 1.07997 * 119.64977 * 179.97438 * 18 17 16 28 28 H 1.08002 * 119.64109 * 179.97438 * 19 18 17 29 29 H 1.08001 * 120.14570 * 359.97424 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 16 2.1534 -3.8222 -0.0144 11 8 1.1738 -4.8512 0.0150 12 8 3.1357 -3.7130 -1.0354 13 6 3.0303 -3.9263 1.5104 14 6 4.3263 -3.4196 1.5933 15 6 5.0281 -3.4791 2.7575 16 6 4.4460 -4.0698 3.8927 17 7 5.1132 -4.1488 5.0492 18 6 4.5432 -4.7069 6.0926 19 6 3.2468 -5.2199 6.0079 20 7 2.5720 -5.1549 4.8831 21 6 3.1306 -4.5914 3.8065 22 6 2.4344 -4.5050 2.5881 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3880 -0.0068 25 1 4.7781 -2.9686 0.7222 26 1 6.0298 -3.0786 2.8079 27 1 5.0830 -4.7705 7.0259 28 1 2.7949 -5.6755 6.8765 29 1 1.4312 -4.8968 2.5078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198162745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:31 Heat of formation + Delta-G solvation = -2.545986 kcal Electronic energy + Delta-G solvation = -18954.653164 eV Core-core repulsion = 15777.159280 eV Total energy + Delta-G solvation = -3177.493884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.046 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.31302 -37.33294 -36.17654 -34.80157 -34.78549 -34.75536 -31.12168 -30.81481 -30.49418 -25.41628 -24.66783 -24.26361 -22.25206 -19.48024 -18.37651 -18.26266 -17.87644 -16.91612 -16.51967 -15.78067 -15.04335 -14.84118 -14.56193 -14.50203 -14.11682 -13.80459 -13.44072 -12.71228 -12.14034 -11.92632 -11.73420 -11.73002 -11.68887 -11.41444 -11.19842 -11.09439 -10.96572 -10.60976 -10.48217 -10.16562 -10.08821 -9.13913 -9.05172 -8.53329 -8.41181 -6.63716 -4.02868 0.15701 0.51054 1.41612 1.96248 2.71735 3.10266 3.16332 3.19502 3.90277 3.98637 4.03840 4.10766 4.27048 4.36566 4.68861 4.79875 4.84516 5.00193 5.18830 5.27614 5.42047 5.56610 5.70253 6.03323 6.15719 6.18906 6.39707 6.76267 6.89159 7.21315 7.32414 7.68599 8.51057 8.62731 9.06684 10.51139 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.006329 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.128062 B = 4422.776615 C = 5052.635102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.032 3.968 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.268 4.268 8 H 0.108 0.892 9 N -0.938 5.938 10 S 2.595 3.405 11 O -0.998 6.998 12 O -0.965 6.965 13 C -0.636 4.636 14 C -0.013 4.013 15 C -0.111 4.111 16 C 0.105 3.895 17 N -0.433 5.433 18 C 0.080 3.920 19 C 0.059 3.941 20 N -0.413 5.413 21 C 0.056 3.944 22 C 0.023 3.977 23 H 0.277 0.723 24 H 0.412 0.588 25 H 0.150 0.850 26 H 0.141 0.859 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 -4.720 9.608 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.178 4.178 3 Si 0.751 3.249 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.410 4.410 8 H 0.126 0.874 9 N -0.689 5.689 10 S 2.684 3.316 11 O -0.987 6.987 12 O -0.955 6.955 13 C -0.716 4.716 14 C -0.033 4.033 15 C -0.131 4.131 16 C -0.019 4.019 17 N -0.147 5.147 18 C -0.096 4.096 19 C -0.117 4.117 20 N -0.127 5.127 21 C -0.068 4.068 22 C 0.002 3.998 23 H 0.087 0.913 24 H 0.248 0.752 25 H 0.167 0.833 26 H 0.159 0.841 27 H 0.190 0.810 28 H 0.191 0.809 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.616 -5.378 8.782 12.240 hybrid contribution 0.168 1.066 1.142 1.571 sum 6.784 -4.311 9.924 12.771 Atomic orbital electron populations 1.69700 1.06127 1.28674 1.46214 1.25339 0.95715 0.99791 0.96913 0.85879 0.79811 0.81052 0.78176 1.18798 1.20215 1.20478 1.19490 0.92458 0.82948 1.46109 0.87428 1.52006 1.17247 1.19382 1.80259 1.07683 0.73232 0.73952 0.76704 1.93425 1.59552 1.57900 1.87803 1.93473 1.61091 1.86860 1.54096 1.32265 1.07635 1.06360 1.25303 1.20744 0.91793 0.92739 0.98045 1.20817 1.00985 1.00525 0.90805 1.19643 0.91892 0.97067 0.93289 1.68711 1.34898 1.12305 0.98814 1.24062 0.94042 0.93413 0.98048 1.24004 0.93120 0.97816 0.96730 1.68650 1.34625 1.10600 0.98803 1.19688 0.93386 0.99443 0.94320 1.20628 0.99289 0.91286 0.88586 0.91275 0.75243 0.83274 0.84094 0.80985 0.80948 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.98 13.06 55.49 0.72 -21.25 15 2 C 0.03 0.77 5.50 -17.43 -0.10 0.67 15 3 Si 0.92 18.78 29.55 -169.99 -5.02 13.75 15 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 15 6 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 7 C -0.27 -6.40 9.63 -15.06 -0.15 -6.55 15 8 H 0.11 2.41 7.82 -52.49 -0.41 2.00 15 9 N -0.94 -21.57 5.75 31.50 0.18 -21.39 15 10 S 2.59 55.37 5.69 -107.50 -0.61 54.76 15 11 O -1.00 -22.81 17.21 -57.17 -0.98 -23.79 15 12 O -0.97 -22.32 16.93 -57.17 -0.97 -23.29 15 13 C -0.64 -12.21 5.86 -39.93 -0.23 -12.44 15 14 C -0.01 -0.22 9.42 -39.93 -0.38 -0.60 15 15 C -0.11 -1.80 9.99 -39.48 -0.39 -2.19 15 16 C 0.10 1.77 6.59 -84.80 -0.56 1.21 15 17 N -0.43 -6.42 10.46 -10.80 -0.11 -6.53 15 18 C 0.08 0.89 11.21 -17.23 -0.19 0.70 15 19 C 0.06 0.68 11.21 -17.23 -0.19 0.49 15 20 N -0.41 -6.54 10.46 -10.80 -0.11 -6.65 15 21 C 0.06 1.00 6.59 -84.80 -0.56 0.44 15 22 C 0.02 0.43 9.43 -39.48 -0.37 0.05 15 23 H 0.28 6.59 8.31 -40.82 -0.34 6.25 15 24 H 0.41 9.63 8.02 -34.47 -0.28 9.35 15 25 H 0.15 2.40 7.56 -52.49 -0.40 2.00 15 26 H 0.14 1.90 8.06 -52.49 -0.42 1.47 15 27 H 0.17 1.11 8.06 -52.49 -0.42 0.69 15 28 H 0.17 1.20 8.06 -52.49 -0.42 0.78 15 29 H 0.15 2.73 7.54 -52.49 -0.40 2.34 15 LS Contribution 279.29 15.07 4.21 4.21 Total: -1.00 -31.06 279.29 -7.70 -38.77 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -1.88 Total: 9.63 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -3.12 Total: -18.22 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.68 Total: -55.83 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.95 Total: -47.08 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.75 kcal Atomic # 16 Polarization: 55.37 SS G_CDS: -0.61 Total: 54.76 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.06 -7.70 -38.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198162745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.220 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds