Wall clock time and date at job start Tue Mar 31 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48497 * 109.47126 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47076 * 120.00158 * 3 2 1 6 6 H 1.48500 * 109.47019 * 239.99843 * 3 2 1 7 7 C 1.37873 * 120.00344 * 180.27398 * 2 1 3 8 8 H 1.08007 * 119.99717 * 16.69660 * 7 2 1 9 9 C 1.50702 * 120.00174 * 196.69419 * 7 2 1 10 10 H 1.08998 * 109.46937 * 305.57046 * 9 7 2 11 11 C 1.53001 * 109.47077 * 65.57336 * 9 7 2 12 12 Cl 1.80302 * 109.47022 * 185.76132 * 11 9 7 13 13 O 1.42903 * 109.46890 * 185.56783 * 9 7 2 14 14 C 1.35251 * 116.99491 * 150.00015 * 13 9 7 15 15 N 1.32508 * 120.91281 * 359.71938 * 14 13 9 16 16 C 1.32322 * 121.38158 * 179.76230 * 15 14 13 17 17 N 1.31211 * 123.03986 * 0.53466 * 16 15 14 18 18 C 1.34056 * 120.52484 * 359.74327 * 17 16 15 19 19 N 1.33337 * 121.80677 * 180.02562 * 18 17 16 20 20 C 1.31340 * 121.22622 * 179.97438 * 19 18 17 21 21 C 1.39119 * 121.81199 * 0.02562 * 20 19 18 22 22 C 1.36881 * 119.87461 * 359.95434 * 21 20 19 23 23 C 1.40198 * 117.99812 * 0.03766 * 22 21 20 24 24 H 0.96999 * 119.99885 * 174.63791 * 1 2 3 25 25 H 1.08999 * 109.46596 * 305.75765 * 11 9 7 26 26 H 1.08997 * 109.47336 * 65.75524 * 11 9 7 27 27 H 1.08002 * 118.47835 * 180.25373 * 16 15 14 28 28 H 1.07997 * 119.09130 * 180.02562 * 20 19 18 29 29 H 1.08000 * 120.05937 * 179.97438 * 21 20 19 30 30 H 1.08000 * 120.99554 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0057 8 1 1.4987 -2.1083 -0.2788 9 6 3.4640 -1.2232 0.3691 10 1 4.0128 -0.5153 -0.2520 11 6 3.6202 -0.8380 1.8415 12 17 5.3725 -0.7080 2.2460 13 8 3.9823 -2.5390 0.1634 14 6 5.2912 -2.6393 -0.1619 15 7 6.0465 -1.5577 -0.2867 16 6 7.3291 -1.6454 -0.6001 17 7 7.9361 -2.7882 -0.8169 18 6 7.2645 -3.9446 -0.7224 19 7 7.8558 -5.1203 -0.9369 20 6 7.1869 -6.2465 -0.8406 21 6 5.8351 -6.2708 -0.5125 22 6 5.1689 -5.0980 -0.2795 23 6 5.8893 -3.8998 -0.3839 24 1 -0.4850 -0.8364 -0.0785 25 1 3.1341 0.1212 2.0196 26 1 3.1583 -1.6012 2.4678 27 1 7.9018 -0.7337 -0.6856 28 1 7.7003 -7.1792 -1.0212 29 1 5.3126 -7.2133 -0.4415 30 1 4.1197 -5.0959 -0.0231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226607398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:12 Heat of formation + Delta-G solvation = 35.336615 kcal Electronic energy + Delta-G solvation = -19206.934571 eV Core-core repulsion = 16029.039694 eV Total energy + Delta-G solvation = -3177.894877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41484 -38.98915 -37.76823 -35.25004 -33.95175 -33.13122 -32.03992 -30.94361 -29.99273 -25.35728 -24.91492 -24.64475 -22.60595 -21.32683 -19.26200 -18.31583 -17.93545 -17.22228 -16.21926 -15.82511 -15.35801 -14.76008 -14.33882 -14.07224 -13.68486 -13.49397 -13.39731 -12.87184 -12.75525 -12.58122 -12.52753 -11.68362 -11.12122 -10.88370 -10.74723 -10.55288 -10.17046 -10.03427 -9.80465 -9.60541 -9.46371 -9.18833 -8.80768 -8.66898 -8.30387 -6.95739 -4.61841 0.35730 0.67008 2.01919 2.95350 3.05808 3.12434 3.23547 3.24192 3.37357 3.76984 4.10649 4.26674 4.28074 4.62437 4.71444 4.72290 4.81118 4.99141 5.26357 5.38730 5.72124 5.76843 5.77654 5.93113 6.03044 6.21080 6.50194 6.60315 6.95453 7.20982 7.61665 7.79127 7.96545 8.42299 8.48737 9.07897 10.46606 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.006299 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.496444 B = 4444.216139 C = 4954.938185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 1.030 2.970 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.614 4.614 8 H 0.075 0.925 9 C 0.192 3.808 10 H 0.064 0.936 11 C -0.051 4.051 12 Cl -0.218 7.218 13 O -0.275 6.275 14 C 0.435 3.565 15 N -0.573 5.573 16 C 0.369 3.631 17 N -0.544 5.544 18 C 0.366 3.634 19 N -0.481 5.481 20 C 0.176 3.824 21 C -0.213 4.213 22 C 0.007 3.993 23 C -0.231 4.231 24 H 0.276 0.724 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.199 0.801 28 H 0.166 0.834 29 H 0.143 0.857 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.356 -7.485 0.685 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.165 4.165 3 Si 0.856 3.144 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.651 4.651 8 H 0.093 0.907 9 C 0.136 3.864 10 H 0.082 0.918 11 C -0.113 4.113 12 Cl -0.192 7.192 13 O -0.174 6.174 14 C 0.237 3.763 15 N -0.307 5.307 16 C 0.078 3.922 17 N -0.267 5.267 18 C 0.122 3.878 19 N -0.191 5.191 20 C 0.002 3.998 21 C -0.233 4.233 22 C -0.021 4.021 23 C -0.240 4.240 24 H 0.086 0.914 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.216 0.784 28 H 0.183 0.817 29 H 0.161 0.839 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.446 -5.137 0.523 11.653 hybrid contribution -1.238 -2.220 0.355 2.567 sum 9.208 -7.358 0.878 11.819 Atomic orbital electron populations 1.70872 1.06451 1.31563 1.41811 1.25774 0.96074 1.02081 0.92544 0.84225 0.75818 0.75841 0.78529 1.19925 1.19367 1.19652 1.21865 0.91799 0.97742 1.53727 0.90698 1.20952 0.95986 0.78353 0.91099 0.91836 1.26166 0.79307 1.05186 1.00679 1.98669 1.26365 1.98966 1.95183 1.86281 1.16959 1.36147 1.78021 1.20502 0.85963 0.88253 0.81610 1.68396 1.08299 1.31384 1.22583 1.24695 0.86785 0.95303 0.85412 1.68389 1.38629 0.97140 1.22504 1.19238 0.85478 0.92014 0.91115 1.67706 1.37873 0.96765 1.16773 1.23130 0.91355 0.95988 0.89345 1.21883 0.96330 0.99405 1.05686 1.21474 1.00525 0.90663 0.89421 1.19623 0.97566 0.94213 1.12584 0.91364 0.87538 0.89278 0.78430 0.81660 0.83909 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.23 13.70 55.43 0.76 -23.47 16 2 C 0.04 1.15 5.31 -17.82 -0.09 1.06 16 3 Si 1.03 22.61 26.28 -169.99 -4.47 18.14 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.27 -5.39 5.71 56.52 0.32 -5.07 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.61 -15.73 9.15 -34.44 -0.32 -16.04 16 8 H 0.07 2.07 8.06 -52.48 -0.42 1.65 16 9 C 0.19 4.30 1.83 -27.88 -0.05 4.25 16 10 H 0.06 1.47 5.70 -51.93 -0.30 1.18 16 11 C -0.05 -1.04 6.01 37.16 0.22 -0.81 16 12 Cl -0.22 -4.16 25.99 -51.86 -1.35 -5.51 16 13 O -0.28 -5.82 9.15 -17.45 -0.16 -5.98 16 14 C 0.44 8.46 6.72 -16.11 -0.11 8.35 16 15 N -0.57 -10.82 6.59 -14.28 -0.09 -10.91 16 16 C 0.37 6.13 12.21 -92.20 -1.13 5.00 16 17 N -0.54 -9.75 10.51 -14.27 -0.15 -9.90 16 18 C 0.37 6.53 7.67 -157.84 -1.21 5.32 16 19 N -0.48 -7.69 10.43 -12.61 -0.13 -7.82 16 20 C 0.18 2.05 11.14 -17.43 -0.19 1.86 16 21 C -0.21 -2.34 10.03 -39.75 -0.40 -2.74 16 22 C 0.01 0.10 9.71 -39.34 -0.38 -0.28 16 23 C -0.23 -4.04 5.75 -106.69 -0.61 -4.66 16 24 H 0.28 7.57 8.73 -40.82 -0.36 7.21 16 25 H 0.11 2.21 4.81 -51.93 -0.25 1.96 16 26 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.20 2.51 8.06 -52.49 -0.42 2.08 16 28 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.15 1.98 7.78 -52.49 -0.41 1.57 16 LS Contribution 275.49 15.07 4.15 4.15 Total: -1.00 -29.69 275.49 -8.01 -37.70 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -2.30 Total: 2.31 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -4.27 Total: 1.30 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.38 Total: -52.11 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.16 Total: -5.98 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.47 Total: 18.14 kcal Atomic # 17 Polarization: -4.16 SS G_CDS: -1.35 Total: -5.51 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.69 -8.01 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226607398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.032 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds