Wall clock time and date at job start Tue Mar 31 2020 01:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47273 * 274.73797 * 3 2 1 5 5 H 1.48500 * 109.46978 * 34.74092 * 3 2 1 6 6 H 1.48498 * 109.47120 * 154.74124 * 3 2 1 7 7 C 1.39898 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00317 * 163.49838 * 7 2 1 9 9 C 1.41383 * 119.99694 * 343.50668 * 7 2 1 10 10 C 1.40795 * 120.57182 * 155.72468 * 9 7 2 11 11 N 1.31512 * 120.69940 * 180.02562 * 10 9 7 12 12 C 1.32160 * 122.07341 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.46023 * 179.97438 * 12 11 10 14 14 C 1.40072 * 121.08244 * 359.97438 * 12 11 10 15 15 C 1.48368 * 120.42010 * 179.97438 * 14 12 11 16 16 C 1.39364 * 120.09004 * 129.74680 * 15 14 12 17 17 C 1.37987 * 119.94997 * 179.78971 * 16 15 14 18 18 C 1.38500 * 120.12207 * 0.48501 * 17 16 15 19 19 F 1.35101 * 119.91267 * 179.77092 * 18 17 16 20 20 C 1.38744 * 120.17167 * 359.74299 * 18 17 16 21 21 F 1.35099 * 119.96915 * 180.02562 * 20 18 17 22 22 C 1.38182 * 120.05034 * 0.02562 * 20 18 17 23 23 C 1.39014 * 119.15770 * 0.02562 * 14 12 11 24 24 H 0.97000 * 120.00437 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.65468 * 359.73807 * 10 9 7 26 26 H 1.08004 * 120.02236 * 0.02562 * 16 15 14 27 27 H 1.07995 * 119.93910 * 180.21102 * 17 16 15 28 28 H 1.08006 * 120.05682 * 179.97438 * 22 20 18 29 29 H 1.08001 * 120.93056 * 180.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3899 2.1043 -1.3953 5 1 1.4936 2.6216 0.7979 6 1 3.5866 1.4134 0.5974 7 6 2.0082 -1.2115 -0.0005 8 1 3.0548 -1.2306 -0.2662 9 6 1.3449 -2.4109 0.3465 10 6 1.8238 -3.6527 -0.1127 11 7 1.2085 -4.7699 0.2083 12 6 0.1264 -4.7821 0.9669 13 9 -0.4638 -5.9606 1.2635 14 6 -0.4185 -3.5932 1.4686 15 6 -1.6342 -3.6240 2.3186 16 6 -1.6529 -2.9462 3.5361 17 6 -2.7866 -2.9732 4.3223 18 6 -3.9027 -3.6810 3.9084 19 9 -5.0088 -3.7084 4.6836 20 6 -3.8881 -4.3616 2.6994 21 9 -4.9793 -5.0504 2.2994 22 6 -2.7583 -4.3354 1.9043 23 6 0.1936 -2.3841 1.1591 24 1 -0.4851 0.8400 0.0004 25 1 2.7030 -3.6880 -0.7389 26 1 -0.7819 -2.3970 3.8622 27 1 -2.8020 -2.4450 5.2641 28 1 -2.7466 -4.8655 0.9633 29 1 -0.2021 -1.4504 1.5309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239585669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:19 Heat of formation + Delta-G solvation = -101.656446 kcal Electronic energy + Delta-G solvation = -20467.992614 eV Core-core repulsion = 16712.440630 eV Total energy + Delta-G solvation = -3755.551984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.057 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.55972 -49.63491 -49.45576 -40.62446 -39.43346 -36.01616 -33.95224 -32.28209 -31.86593 -29.82967 -27.39843 -24.90345 -24.49439 -23.41166 -22.42152 -19.57207 -18.90804 -18.50728 -18.24150 -18.06640 -17.58481 -17.34089 -16.82673 -16.50667 -16.05999 -15.90400 -15.56153 -15.13298 -14.99513 -14.40637 -14.18796 -14.08915 -13.90420 -13.63616 -13.31436 -13.23011 -13.03799 -12.78803 -12.41304 -12.28150 -11.84109 -11.23329 -10.64561 -10.33345 -10.10115 -9.79731 -9.26297 -8.78874 -6.50415 -0.37502 -0.05805 0.55670 0.82022 1.45350 1.50447 1.60533 2.18910 2.29402 2.57278 2.69290 3.20373 3.23816 3.43428 3.46472 3.64602 3.97935 4.04967 4.22603 4.61952 4.64008 4.69452 4.75684 4.87564 4.92958 5.10037 5.14902 5.31700 5.54997 5.65916 5.73951 5.89391 6.34858 6.59389 6.64508 7.31537 8.15405 Molecular weight = 279.06amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.005562 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.235821 B = 5032.694867 C = 6097.801624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.455 4.455 8 H 0.098 0.902 9 C 0.035 3.965 10 C 0.000 4.000 11 N -0.503 5.503 12 C 0.137 3.863 13 F -0.145 7.145 14 C -0.097 4.097 15 C -0.015 4.015 16 C -0.082 4.082 17 C -0.104 4.104 18 C 0.056 3.944 19 F -0.132 7.132 20 C 0.059 3.941 21 F -0.136 7.136 22 C -0.119 4.119 23 C -0.106 4.106 24 H 0.298 0.702 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.185 0.815 28 H 0.135 0.865 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 2.533 6.782 7.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.177 1.177 7 C -0.483 4.483 8 H 0.116 0.884 9 C 0.031 3.969 10 C -0.162 4.162 11 N -0.215 5.215 12 C -0.016 4.016 13 F -0.125 7.125 14 C -0.101 4.101 15 C -0.016 4.016 16 C -0.100 4.100 17 C -0.122 4.122 18 C 0.036 3.964 19 F -0.111 7.111 20 C 0.039 3.961 21 F -0.115 7.115 22 C -0.138 4.138 23 C -0.132 4.132 24 H 0.109 0.891 25 H 0.173 0.827 26 H 0.175 0.825 27 H 0.202 0.798 28 H 0.153 0.847 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.308 1.803 6.501 7.514 hybrid contribution -0.644 0.621 -0.135 0.905 sum -3.952 2.424 6.367 7.876 Atomic orbital electron populations 1.69791 1.09144 1.31783 1.32390 1.26844 0.95473 1.04795 0.90764 0.85076 0.79362 0.75348 0.79443 1.18988 1.18986 1.17673 1.19938 0.98608 0.90911 1.38828 0.88364 1.18801 0.92799 0.94495 0.90843 1.22616 1.02671 0.86347 1.04579 1.66271 1.08095 1.34285 1.12863 1.17738 0.96278 0.80240 1.07351 1.91396 1.82378 1.46472 1.92205 1.19156 0.96619 0.92896 1.01385 1.18632 0.91735 0.96548 0.94674 1.21391 0.99123 0.97586 0.91922 1.21272 0.89817 0.98757 1.02364 1.17789 0.85852 1.03035 0.89683 1.91502 1.50841 1.95219 1.73494 1.17558 0.85056 0.98619 0.94853 1.91486 1.51904 1.77430 1.90692 1.21064 0.91322 1.00819 1.00569 1.21754 0.97391 0.95518 0.98487 0.89104 0.82665 0.82503 0.79754 0.84749 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -35.57 10.90 21.82 0.24 -35.33 15 2 C 0.04 1.66 5.19 85.24 0.44 2.10 15 3 Si 0.99 31.57 29.59 68.60 2.03 33.60 15 4 H -0.27 -8.38 7.11 99.48 0.71 -7.68 15 5 H -0.27 -8.15 7.11 99.48 0.71 -7.44 15 6 H -0.25 -7.91 7.11 99.48 0.71 -7.20 15 7 C -0.45 -20.41 9.08 23.45 0.21 -20.20 15 8 H 0.10 4.11 7.90 -2.91 -0.02 4.09 15 9 C 0.04 1.67 5.59 -21.22 -0.12 1.55 15 10 C 0.00 -0.02 10.96 85.37 0.94 0.91 15 11 N -0.50 -24.45 10.34 -193.72 -2.00 -26.45 15 12 C 0.14 6.45 8.30 85.09 0.71 7.16 15 13 F -0.14 -6.56 15.90 44.97 0.72 -5.84 15 14 C -0.10 -4.22 5.48 -19.95 -0.11 -4.33 15 15 C -0.01 -0.54 5.32 -20.05 -0.11 -0.65 15 16 C -0.08 -2.40 9.53 22.48 0.21 -2.18 15 17 C -0.10 -2.53 10.01 22.27 0.22 -2.31 15 18 C 0.06 1.61 7.31 22.45 0.16 1.78 15 19 F -0.13 -3.68 17.18 44.97 0.77 -2.91 15 20 C 0.06 1.92 7.30 22.38 0.16 2.08 15 21 F -0.14 -4.50 17.18 44.97 0.77 -3.73 15 22 C -0.12 -4.21 8.84 22.52 0.20 -4.01 15 23 C -0.11 -4.84 8.28 23.12 0.19 -4.65 15 24 H 0.30 11.76 8.30 -92.71 -0.77 10.99 15 25 H 0.16 6.44 8.06 -2.91 -0.02 6.42 15 26 H 0.16 4.08 8.05 -2.91 -0.02 4.06 15 27 H 0.19 3.01 8.06 -2.91 -0.02 2.99 15 28 H 0.13 4.93 7.79 -2.91 -0.02 4.90 15 29 H 0.14 6.32 6.20 -2.91 -0.02 6.30 15 Total: -1.00 -52.84 277.95 6.86 -45.98 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.22 Total: 17.43 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 3.12 Total: -22.74 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -1.76 Total: -61.79 kcal Atomic # 9 Polarization: -14.74 SS G_CDS: 2.26 Total: -12.48 kcal Atomic # 14 Polarization: 31.57 SS G_CDS: 2.03 Total: 33.60 kcal Total: -52.84 6.86 -45.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239585669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.675 kcal (2) G-P(sol) polarization free energy of solvation -52.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds