Wall clock time and date at job start Tue Mar 31 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36969 * 120.00121 * 2 1 4 4 H 1.08005 * 119.99913 * 185.36448 * 3 2 1 5 5 C 1.38939 * 120.00099 * 5.36091 * 3 2 1 6 6 N 1.31441 * 119.99921 * 5.37389 * 5 3 2 7 7 Si 1.86800 * 120.00269 * 185.37896 * 5 3 2 8 8 H 1.48501 * 109.47261 * 89.99506 * 7 5 3 9 9 H 1.48496 * 109.47016 * 209.99768 * 7 5 3 10 10 H 1.48497 * 109.46738 * 329.99575 * 7 5 3 11 11 C 1.34780 * 120.00064 * 179.97438 * 2 1 3 12 12 O 1.21757 * 120.00022 * 185.72432 * 11 2 1 13 13 C 1.46472 * 119.99922 * 5.73640 * 11 2 1 14 14 C 1.40603 * 126.59323 * 54.25722 * 13 11 2 15 15 N 1.30731 * 108.74015 * 180.02562 * 14 13 11 16 16 N 1.40016 * 109.62720 * 359.97438 * 15 14 13 17 17 C 1.36271 * 131.99930 * 180.02562 * 16 15 14 18 18 C 1.35208 * 120.72355 * 179.97438 * 17 16 15 19 19 C 1.40120 * 120.32981 * 359.73329 * 18 17 16 20 20 C 1.36596 * 119.39638 * 0.54412 * 19 18 17 21 21 Cl 1.73600 * 120.38360 * 179.73729 * 20 19 18 22 22 C 1.36575 * 107.91341 * 0.02562 * 16 15 14 23 23 H 1.08997 * 109.47595 * 175.04969 * 1 2 3 24 24 H 1.09006 * 109.47507 * 295.05194 * 1 2 3 25 25 H 1.08997 * 109.47177 * 55.05187 * 1 2 3 26 26 H 0.96998 * 120.00359 * 180.02562 * 6 5 3 27 27 H 1.08004 * 125.63374 * 0.05621 * 14 13 11 28 28 H 1.07998 * 119.64098 * 0.02918 * 17 16 15 29 29 H 1.08001 * 119.83508 * 179.97438 * 18 17 16 30 30 H 1.08004 * 120.30496 * 180.30262 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1498 1.1862 0.0000 4 1 3.2263 1.1882 -0.0874 5 6 1.4597 2.3868 0.1124 6 7 0.1625 2.3819 0.3247 7 14 2.3752 4.0081 -0.0382 8 1 2.3918 4.4370 -1.4598 9 1 1.6924 5.0402 0.7824 10 1 3.7694 3.8357 0.4431 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1698 0.1057 13 6 1.4120 -2.4326 -0.1257 14 6 0.5057 -2.7808 -1.1427 15 7 0.0618 -3.9890 -0.9142 16 7 0.6484 -4.4926 0.2532 17 6 0.5143 -5.6845 0.9000 18 6 1.2049 -5.9360 2.0349 19 6 2.0759 -4.9729 2.5613 20 6 2.2129 -3.7727 1.9236 21 17 3.2798 -2.5586 2.5571 22 6 1.4864 -3.5349 0.7490 23 1 -0.3634 -1.0238 -0.0887 24 1 -0.3634 0.4352 0.9310 25 1 -0.3633 0.5887 -0.8423 26 1 -0.3194 3.2201 0.4028 27 1 0.2232 -2.1538 -1.9756 28 1 -0.1500 -6.4368 0.5013 29 1 1.0875 -6.8854 2.5361 30 1 2.6310 -5.1761 3.4653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442638947.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:06 Heat of formation + Delta-G solvation = 70.846444 kcal Electronic energy + Delta-G solvation = -19315.088336 eV Core-core repulsion = 16138.733281 eV Total energy + Delta-G solvation = -3176.355056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.17249 -40.02928 -38.41724 -37.34747 -36.54702 -33.86282 -33.29265 -31.88657 -29.97372 -28.13300 -26.40432 -24.87536 -24.19661 -23.18556 -20.83484 -19.02196 -18.62965 -17.86903 -17.55226 -17.04736 -16.78373 -16.34719 -16.00664 -15.81003 -15.47897 -14.54237 -14.37216 -13.79670 -13.65145 -13.49680 -13.45746 -13.10817 -12.84937 -12.73743 -12.47047 -12.16693 -12.13668 -12.04836 -11.72777 -11.05437 -10.93030 -10.49595 -10.34071 -9.79033 -8.60265 -8.19652 -5.83409 -0.46322 -0.07508 0.84919 1.26187 1.41026 1.44209 1.45561 1.54973 2.10245 2.25831 2.35890 3.03447 3.22658 3.37277 3.42344 3.79557 3.83837 4.19557 4.31536 4.45621 4.57790 4.69271 4.79214 4.98832 5.18155 5.19686 5.29313 5.48159 5.52181 5.73839 6.10532 6.35144 6.55809 7.23268 7.55245 8.14106 8.72908 Molecular weight = 279.05amu Principal moments of inertia in cm(-1) A = 0.026509 B = 0.006061 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.989443 B = 4618.697400 C = 5277.183858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.457 5.457 3 C -0.329 4.329 4 H 0.078 0.922 5 C -0.009 4.009 6 N -0.902 5.902 7 Si 0.994 3.006 8 H -0.268 1.268 9 H -0.272 1.272 10 H -0.276 1.276 11 C 0.518 3.482 12 O -0.618 6.618 13 C -0.294 4.294 14 C 0.112 3.888 15 N -0.323 5.323 16 N -0.266 5.266 17 C 0.105 3.895 18 C -0.135 4.135 19 C -0.046 4.046 20 C -0.076 4.076 21 Cl -0.045 7.045 22 C 0.120 3.880 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.270 0.730 27 H 0.210 0.790 28 H 0.216 0.784 29 H 0.223 0.777 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -17.230 4.555 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.175 5.175 3 C -0.457 4.457 4 H 0.096 0.904 5 C -0.209 4.209 6 N -0.542 5.542 7 Si 0.817 3.183 8 H -0.193 1.193 9 H -0.196 1.196 10 H -0.201 1.201 11 C 0.307 3.693 12 O -0.505 6.505 13 C -0.309 4.309 14 C -0.066 4.066 15 N -0.146 5.146 16 N -0.032 5.032 17 C -0.020 4.020 18 C -0.156 4.156 19 C -0.070 4.070 20 C -0.104 4.104 21 Cl -0.016 7.016 22 C -0.001 4.001 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.226 0.774 28 H 0.232 0.768 29 H 0.240 0.760 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.518 -17.800 4.122 18.606 hybrid contribution 0.991 2.124 0.085 2.346 sum -2.527 -15.675 4.207 16.425 Atomic orbital electron populations 1.21539 0.79264 0.97465 1.02452 1.43722 1.06737 1.04476 1.62575 1.19725 0.92853 0.83639 1.49458 0.90362 1.26058 0.96760 1.02182 0.95867 1.70276 1.07667 1.28002 1.48276 0.84925 0.77816 0.76891 0.78648 1.19320 1.19642 1.20114 1.17043 0.86474 0.82678 0.83146 1.90588 1.15209 1.87522 1.57183 1.19918 1.11430 0.97219 1.02346 1.24186 0.91828 0.92646 0.97930 1.77409 1.23980 1.13121 1.00055 1.46275 1.27560 1.11680 1.17676 1.22686 1.00860 0.85107 0.93313 1.21497 0.96464 1.02537 0.95126 1.21810 0.96488 0.88899 0.99823 1.20358 0.99445 0.94821 0.95814 1.98442 1.62857 1.55211 1.85060 1.18994 0.95148 0.90628 0.95304 0.93308 0.93123 0.92999 0.91979 0.77382 0.76756 0.76044 0.79903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.72 8.60 127.77 1.10 7.82 16 2 N -0.46 -25.40 3.02 -663.65 -2.01 -27.41 16 3 C -0.33 -19.49 9.55 84.06 0.80 -18.69 16 4 H 0.08 4.93 7.20 -2.91 -0.02 4.91 16 5 C -0.01 -0.48 5.42 84.92 0.46 -0.02 16 6 N -0.90 -49.02 9.53 21.66 0.21 -48.81 16 7 Si 0.99 44.03 29.56 68.60 2.03 46.06 16 8 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 C 0.52 27.78 6.57 86.39 0.57 28.35 16 12 O -0.62 -36.86 14.81 -4.53 -0.07 -36.93 16 13 C -0.29 -13.02 4.83 -19.90 -0.10 -13.12 16 14 C 0.11 4.19 9.93 85.43 0.85 5.04 16 15 N -0.32 -10.83 12.57 -56.59 -0.71 -11.54 16 16 N -0.27 -8.05 3.86 -187.15 -0.72 -8.77 16 17 C 0.11 1.83 11.18 83.30 0.93 2.76 16 18 C -0.14 -1.65 9.98 22.03 0.22 -1.43 16 19 C -0.05 -0.91 9.87 22.34 0.22 -0.69 16 20 C -0.08 -2.49 6.33 22.35 0.14 -2.34 16 21 Cl -0.04 -1.76 26.12 -2.72 -0.07 -1.83 16 22 C 0.12 4.52 6.74 39.52 0.27 4.79 16 23 H 0.05 2.12 4.89 -2.39 -0.01 2.11 16 24 H 0.05 2.68 6.88 -2.38 -0.02 2.66 16 25 H 0.05 2.60 7.25 -2.39 -0.02 2.58 16 26 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.21 6.87 8.06 -2.91 -0.02 6.84 16 28 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.22 0.11 8.06 -2.91 -0.02 0.09 16 30 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -78.94 276.54 5.31 -73.63 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.19 Total: 3.13 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.46 Total: 12.47 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -3.23 Total: -96.53 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.07 Total: -36.93 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.83 kcal Total: -78.94 5.31 -73.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442638947.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.474 kcal (2) G-P(sol) polarization free energy of solvation -78.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds