Wall clock time and date at job start Tue Mar 31 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34979 * 120.00243 * 2 1 4 4 C 1.47147 * 120.00103 * 172.65652 * 3 2 1 5 5 C 1.39897 * 120.16744 * 326.19869 * 4 3 2 6 6 C 1.37866 * 119.84614 * 180.02562 * 5 4 3 7 7 C 1.38417 * 120.19158 * 359.97438 * 6 5 4 8 8 C 1.38511 * 120.33666 * 0.03985 * 7 6 5 9 9 Cl 1.73593 * 119.92379 * 180.02562 * 8 7 6 10 10 C 1.38020 * 120.14817 * 359.95775 * 8 7 6 11 11 C 1.46230 * 120.00368 * 180.02562 * 2 1 3 12 12 O 1.21751 * 120.00064 * 283.49430 * 11 2 1 13 13 N 1.34784 * 120.00148 * 103.48526 * 11 2 1 14 14 C 1.46501 * 119.99555 * 5.44680 * 13 11 2 15 15 C 1.36714 * 120.00080 * 185.44492 * 13 11 2 16 16 H 1.07999 * 119.99864 * 3.40525 * 15 13 11 17 17 C 1.39120 * 119.99825 * 183.40766 * 15 13 11 18 18 N 1.31319 * 120.00114 * 7.33424 * 17 15 13 19 19 Si 1.86801 * 119.99837 * 187.32957 * 17 15 13 20 20 H 1.48494 * 109.47272 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46876 * 120.00012 * 19 17 15 22 22 H 1.48505 * 109.47216 * 240.00133 * 19 17 15 23 23 H 1.08994 * 109.47017 * 84.94636 * 1 2 3 24 24 H 1.08995 * 109.46758 * 204.95180 * 1 2 3 25 25 H 1.08998 * 109.46798 * 324.94641 * 1 2 3 26 26 H 1.08005 * 119.99858 * 352.66807 * 3 2 1 27 27 H 1.07991 * 120.07469 * 0.02562 * 5 4 3 28 28 H 1.07993 * 119.90308 * 180.02562 * 6 5 4 29 29 H 1.07993 * 119.82869 * 180.02562 * 7 6 5 30 30 H 1.07994 * 120.09408 * 180.29846 * 10 8 7 31 31 H 1.08994 * 109.47635 * 354.66855 * 14 13 11 32 32 H 1.09007 * 109.46911 * 114.67044 * 14 13 11 33 33 H 1.08996 * 109.47129 * 234.66524 * 14 13 11 34 34 H 0.97004 * 120.00268 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1689 0.0000 4 6 3.6443 1.1741 0.1629 5 6 4.2650 0.2166 0.9723 6 6 5.6356 0.2279 1.1206 7 6 6.3982 1.1830 0.4709 8 6 5.7918 2.1349 -0.3321 9 17 6.7586 3.3274 -1.1424 10 6 4.4207 2.1364 -0.4905 11 6 2.2382 -1.2663 -0.0006 12 8 2.3296 -1.9170 1.0244 13 7 2.8109 -1.7134 -1.1358 14 6 2.8041 -0.8765 -2.3383 15 6 3.3982 -2.9476 -1.1652 16 1 3.3553 -3.5868 -0.2957 17 6 4.0511 -3.3801 -2.3150 18 7 4.2294 -2.5530 -3.3193 19 14 4.6743 -5.1373 -2.4302 20 1 4.3499 -5.8609 -1.1747 21 1 4.0223 -5.8195 -3.5768 22 1 6.1457 -5.1285 -2.6310 23 1 -0.3633 0.0905 -1.0236 24 1 -0.3633 -0.9317 0.4335 25 1 -0.3633 0.8413 0.5902 26 1 1.6485 2.1005 -0.1194 27 1 3.6718 -0.5296 1.4797 28 1 6.1157 -0.5110 1.7449 29 1 7.4714 1.1862 0.5909 30 1 3.9492 2.8760 -1.1206 31 1 2.2147 0.0213 -2.1529 32 1 3.8265 -0.5944 -2.5904 33 1 2.3665 -1.4340 -3.1664 34 1 4.6850 -2.8544 -4.1209 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255641521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:25 Heat of formation + Delta-G solvation = 14.001997 kcal Electronic energy + Delta-G solvation = -19743.984840 eV Core-core repulsion = 16668.705168 eV Total energy + Delta-G solvation = -3075.279672 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.50460 -38.13181 -36.20565 -34.84584 -34.15044 -31.47458 -30.80327 -30.25062 -26.61520 -26.16910 -24.77531 -22.58366 -21.99803 -20.92741 -17.93764 -17.06258 -16.66845 -15.62549 -15.20927 -15.18443 -14.39155 -14.27750 -13.94443 -13.33301 -13.24918 -12.99816 -12.82096 -12.70493 -12.06650 -11.88079 -11.71184 -11.52338 -11.26407 -11.15750 -11.05464 -10.84992 -10.55650 -10.47427 -10.36679 -10.26154 -9.30169 -9.07852 -8.52968 -8.38124 -7.89776 -7.66113 -6.30270 -3.83965 1.21882 1.63637 2.36507 2.54557 3.10318 3.21770 3.28557 3.79114 4.07936 4.14484 4.88548 5.00858 5.14078 5.16552 5.41187 5.52552 5.66168 5.71716 5.82542 5.87389 5.92349 6.07040 6.23744 6.26799 6.39704 6.49836 6.69809 6.79394 6.90583 7.06229 7.13539 7.25106 7.40844 7.51819 8.01227 8.43571 9.12963 9.39334 9.92860 10.63352 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.007232 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.920035 B = 3870.599762 C = 4913.752142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.124 4.124 4 C -0.038 4.038 5 C -0.096 4.096 6 C -0.103 4.103 7 C -0.115 4.115 8 C -0.038 4.038 9 Cl -0.087 7.087 10 C -0.103 4.103 11 C 0.462 3.538 12 O -0.602 6.602 13 N -0.422 5.422 14 C 0.114 3.886 15 C -0.301 4.301 16 H 0.106 0.894 17 C 0.029 3.971 18 N -0.877 5.877 19 Si 0.929 3.071 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.281 1.281 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.125 0.875 27 H 0.157 0.843 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 9.494 2.373 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.143 4.143 4 C -0.038 4.038 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.133 4.133 8 C -0.064 4.064 9 Cl -0.059 7.059 10 C -0.122 4.122 11 C 0.251 3.749 12 O -0.491 6.491 13 N -0.137 5.137 14 C -0.030 4.030 15 C -0.429 4.429 16 H 0.124 0.876 17 C -0.174 4.174 18 N -0.517 5.517 19 Si 0.755 3.245 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.207 1.207 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.143 0.857 27 H 0.174 0.826 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.033 9.247 2.533 9.588 hybrid contribution 0.556 -0.627 -0.591 1.025 sum 0.523 8.620 1.942 8.852 Atomic orbital electron populations 1.20701 0.90689 1.02932 1.02031 1.22132 0.96493 0.94204 0.97326 1.21775 0.91585 0.97053 1.03923 1.18903 0.93102 0.94857 0.96938 1.22360 0.95406 0.96837 0.96762 1.21014 0.93963 0.97625 0.99530 1.21039 1.00058 0.94805 0.97442 1.20649 0.91598 0.94280 0.99904 1.98331 1.71775 1.56840 1.78908 1.21052 0.91391 0.99617 1.00100 1.17592 0.85931 0.86750 0.84620 1.90628 1.66710 1.59876 1.31917 1.43593 1.45922 1.15453 1.08713 1.21792 1.02211 0.91624 0.87359 1.19830 1.30892 0.91627 1.00570 0.87614 1.25355 0.96744 0.99925 0.95344 1.70145 1.41178 1.34198 1.06220 0.85814 0.78332 0.81788 0.78548 1.19136 1.20591 1.20652 0.91074 0.91093 0.91506 0.85677 0.82587 0.85430 0.85674 0.85342 0.95576 0.90757 0.91886 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.03 36.00 0.36 -1.23 16 2 C -0.10 -1.85 4.14 -102.57 -0.42 -2.28 16 3 C -0.12 -2.08 8.41 -37.12 -0.31 -2.39 16 4 C -0.04 -0.68 5.23 -105.06 -0.55 -1.23 16 5 C -0.10 -1.90 8.32 -39.10 -0.33 -2.22 16 6 C -0.10 -1.83 10.03 -39.65 -0.40 -2.22 16 7 C -0.11 -1.87 9.82 -39.41 -0.39 -2.25 16 8 C -0.04 -0.62 6.31 -39.56 -0.25 -0.87 16 9 Cl -0.09 -1.24 28.95 -51.86 -1.50 -2.74 16 10 C -0.10 -1.69 9.58 -39.06 -0.37 -2.06 16 11 C 0.46 10.99 4.18 -13.05 -0.05 10.93 16 12 O -0.60 -16.15 14.85 5.14 0.08 -16.07 16 13 N -0.42 -10.64 3.02 -123.86 -0.37 -11.02 16 14 C 0.11 2.62 8.39 59.85 0.50 3.12 16 15 C -0.30 -8.22 9.55 -15.05 -0.14 -8.36 16 16 H 0.11 3.03 7.19 -52.49 -0.38 2.65 16 17 C 0.03 0.76 5.41 -17.44 -0.09 0.67 16 18 N -0.88 -22.84 9.53 55.50 0.53 -22.32 16 19 Si 0.93 20.55 29.56 -169.99 -5.02 15.52 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 25 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 26 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 27 H 0.16 3.49 4.80 -52.49 -0.25 3.24 16 28 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.03 0.52 5.54 -51.93 -0.29 0.23 16 32 H 0.07 1.86 6.97 -51.93 -0.36 1.50 16 33 H 0.06 1.52 7.15 -51.93 -0.37 1.15 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 303.15 15.07 4.57 4.57 Total: -1.00 -29.31 303.15 -7.92 -37.22 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.74 Total: 5.23 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.45 Total: -10.40 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.16 Total: -33.33 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.08 Total: -16.07 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.31 -7.92 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255641521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.227 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds