Wall clock time and date at job start Tue Mar 31 2020 00:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47509 * 346.70107 * 3 2 1 5 5 C 1.36933 * 120.00111 * 275.00305 * 4 3 2 6 6 H 1.07994 * 120.00345 * 186.63057 * 5 4 3 7 7 C 1.38816 * 120.00112 * 6.63123 * 5 4 3 8 8 N 1.31625 * 119.99556 * 26.28321 * 7 5 4 9 9 Si 1.86801 * 120.00376 * 206.28230 * 7 5 4 10 10 H 1.48505 * 109.47020 * 89.99787 * 9 7 5 11 11 H 1.48499 * 109.47169 * 210.00116 * 9 7 5 12 12 H 1.48496 * 109.47084 * 330.00076 * 9 7 5 13 13 S 1.65596 * 120.00048 * 94.99999 * 4 3 2 14 14 O 1.42091 * 104.27784 * 152.56780 * 13 4 3 15 15 O 1.42103 * 104.27743 * 24.71032 * 13 4 3 16 16 C 1.81401 * 104.45062 * 268.63795 * 13 4 3 17 17 C 1.50702 * 109.47104 * 179.97438 * 16 13 4 18 18 C 1.38230 * 120.00090 * 90.00310 * 17 16 13 19 19 C 1.38227 * 120.00333 * 179.97438 * 18 17 16 20 20 C 1.38240 * 120.00038 * 359.97438 * 19 18 17 21 21 C 1.38235 * 119.99782 * 0.26961 * 20 19 18 22 22 C 1.38237 * 119.99946 * 359.51975 * 21 20 19 23 23 H 4.40644 * 5.51456 * 180.02562 * 4 1 2 24 24 H 1.09002 * 109.46396 * 226.69909 * 3 2 1 25 25 H 1.09005 * 109.46805 * 106.70455 * 3 2 1 26 26 H 0.97005 * 119.99587 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.47333 * 59.99939 * 16 13 4 28 28 H 1.09004 * 109.47353 * 300.00104 * 16 13 4 29 29 H 1.08002 * 120.00020 * 359.97363 * 18 17 16 30 30 H 1.08003 * 120.00290 * 179.97438 * 19 18 17 31 31 H 1.07994 * 119.99968 * 180.02562 * 20 19 18 32 32 H 1.07997 * 119.99935 * 179.72873 * 21 20 19 33 33 H 1.07995 * 120.00107 * 180.27199 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 -1.3432 0.3177 5 6 3.2660 -1.7332 1.6238 6 1 3.7259 -2.6811 1.8608 7 6 2.8077 -0.9100 2.6432 8 7 1.8311 -0.0582 2.4124 9 14 3.5768 -1.0111 4.3426 10 1 4.7170 -0.0634 4.4270 11 1 2.5618 -0.6569 5.3671 12 1 4.0629 -2.3932 4.5845 13 16 3.5294 -2.3908 -0.9026 14 8 4.5117 -3.2427 -0.3295 15 8 3.8433 -1.5464 -2.0016 16 6 1.9985 -3.3097 -1.2228 17 6 2.2328 -4.3065 -2.3285 18 6 2.6639 -5.5847 -2.0269 19 6 2.8784 -6.4992 -3.0411 20 6 2.6612 -6.1356 -4.3570 21 6 2.2349 -4.8558 -4.6590 22 6 2.0163 -3.9426 -3.6445 23 1 -1.0498 -0.0005 -0.0001 24 1 3.0090 0.7057 0.7479 25 1 3.0092 0.2962 -0.9844 26 1 1.5106 0.5168 3.1249 27 1 1.2132 -2.6149 -1.5208 28 1 1.6942 -3.8354 -0.3177 29 1 2.8333 -5.8690 -0.9988 30 1 3.2156 -7.4978 -2.8054 31 1 2.8283 -6.8502 -5.1493 32 1 2.0694 -4.5703 -5.6874 33 1 1.6790 -2.9441 -3.8801 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281262900.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:40 Heat of formation + Delta-G solvation = 24.807461 kcal Electronic energy + Delta-G solvation = -19542.228156 eV Core-core repulsion = 16469.460750 eV Total energy + Delta-G solvation = -3072.767406 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.89498 -36.42385 -35.72935 -34.51887 -32.45131 -32.10266 -31.22825 -30.63461 -26.72439 -26.57613 -23.93627 -22.30583 -21.16487 -18.56850 -17.95442 -16.86787 -16.56066 -16.51805 -15.26895 -15.09397 -14.83276 -14.55906 -14.40552 -13.52163 -13.39559 -13.15510 -12.90133 -12.41554 -12.38113 -11.95894 -11.82049 -11.33658 -11.04246 -10.95062 -10.82429 -10.81384 -10.67531 -10.46927 -10.33726 -10.08579 -9.73726 -9.29196 -8.92668 -8.68656 -8.49804 -8.13715 -6.69747 -4.01288 1.25609 1.64310 1.83369 3.04221 3.11195 3.15520 3.61666 3.93338 4.05369 4.10418 4.40246 4.55878 4.97640 5.07426 5.17090 5.27827 5.38031 5.40680 5.52747 5.77130 5.81022 6.01306 6.09662 6.25432 6.32757 6.48039 6.67035 6.70706 6.72009 6.90095 6.92349 7.06451 7.15948 7.25586 8.07161 8.45926 8.83659 8.89694 10.19479 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.006016 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.787686 B = 4653.505605 C = 5140.441788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.111 4.111 3 C 0.231 3.769 4 N -0.792 5.792 5 C -0.236 4.236 6 H 0.125 0.875 7 C 0.027 3.973 8 N -0.810 5.810 9 Si 0.933 3.067 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.262 1.262 13 S 2.463 3.537 14 O -0.978 6.978 15 O -0.995 6.995 16 C -0.624 4.624 17 C -0.057 4.057 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.121 4.121 23 H 0.197 0.803 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.278 0.722 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 -4.055 -4.609 6.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.113 4.113 3 C 0.106 3.894 4 N -0.613 5.613 5 C -0.385 4.385 6 H 0.143 0.857 7 C -0.187 4.187 8 N -0.448 5.448 9 Si 0.757 3.243 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.186 1.186 13 S 2.561 3.439 14 O -0.967 6.967 15 O -0.984 6.984 16 C -0.740 4.740 17 C -0.059 4.059 18 C -0.139 4.139 19 C -0.136 4.136 20 C -0.154 4.154 21 C -0.137 4.137 22 C -0.140 4.140 23 H 0.214 0.786 24 H 0.129 0.871 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.329 -4.129 -5.249 6.810 hybrid contribution -1.060 -0.231 1.001 1.476 sum -2.389 -4.361 -4.249 6.540 Atomic orbital electron populations 1.24213 0.95296 1.01736 1.07450 1.23375 0.94532 0.98833 0.94605 1.18463 0.83896 0.86011 1.01028 1.55364 1.71187 1.17361 1.17340 1.20233 1.30188 1.07704 0.80369 0.85740 1.25681 0.94994 0.97223 1.00786 1.70247 1.19643 1.20591 1.34326 0.85805 0.78998 0.79843 0.79633 1.19567 1.20643 1.18640 1.14973 0.80900 0.73903 0.74112 1.93347 1.58491 1.68594 1.76306 1.93327 1.85044 1.64780 1.55273 1.30346 1.29847 1.10780 1.02992 1.19382 0.98631 0.94178 0.93697 1.21177 0.99830 0.92967 0.99933 1.21101 1.00230 0.99398 0.92901 1.21078 1.01378 0.96551 0.96421 1.21093 0.99927 0.93737 0.98910 1.21160 1.00638 0.99942 0.92235 0.78582 0.87066 0.89577 0.91075 0.86581 0.86201 0.85590 0.86090 0.86335 0.86119 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.37 19.21 29.55 0.57 -4.81 16 2 C -0.11 -2.41 11.07 -37.12 -0.41 -2.83 16 3 C 0.23 5.11 5.45 -6.83 -0.04 5.08 16 4 N -0.79 -18.56 2.82 -62.77 -0.18 -18.74 16 5 C -0.24 -5.63 9.40 -15.06 -0.14 -5.77 16 6 H 0.13 2.96 7.21 -52.49 -0.38 2.58 16 7 C 0.03 0.61 4.90 -17.43 -0.09 0.52 16 8 N -0.81 -18.63 8.90 55.49 0.49 -18.14 16 9 Si 0.93 17.92 29.63 -169.99 -5.04 12.88 16 10 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 12 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 13 S 2.46 57.32 5.37 -107.50 -0.58 56.74 16 14 O -0.98 -25.06 16.81 -57.54 -0.97 -26.03 16 15 O -0.99 -24.65 16.50 -57.54 -0.95 -25.60 16 16 C -0.62 -12.62 6.31 36.01 0.23 -12.40 16 17 C -0.06 -1.10 5.14 -104.62 -0.54 -1.64 16 18 C -0.12 -2.13 9.70 -39.59 -0.38 -2.52 16 19 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 20 C -0.14 -1.91 10.05 -39.58 -0.40 -2.30 16 21 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 22 C -0.12 -2.13 9.70 -39.58 -0.38 -2.52 16 23 H 0.20 3.22 7.80 -54.10 -0.42 2.80 16 24 H 0.11 2.46 6.57 -51.93 -0.34 2.12 16 25 H 0.09 1.80 6.80 -51.93 -0.35 1.45 16 26 H 0.28 6.04 8.31 -40.82 -0.34 5.70 16 27 H 0.12 2.27 8.09 -51.92 -0.42 1.85 16 28 H 0.12 2.34 8.09 -51.92 -0.42 1.92 16 29 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -28.94 305.51 -8.57 -37.51 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -3.58 Total: 10.29 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: -2.38 Total: -33.52 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.32 Total: -36.88 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -1.92 Total: -51.63 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.04 Total: 12.88 kcal Atomic # 16 Polarization: 57.32 SS G_CDS: -0.58 Total: 56.74 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.94 -8.57 -37.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281262900.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.318 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds