Wall clock time and date at job start Tue Mar 31 2020 00:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47057 * 2 1 4 4 C 1.50697 * 109.46961 * 240.00256 * 2 1 3 5 5 H 1.08004 * 119.99920 * 239.99829 * 4 2 1 6 6 C 1.37878 * 120.00423 * 60.00077 * 4 2 1 7 7 N 1.31508 * 119.99847 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99744 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46920 * 90.00038 * 8 6 4 10 10 H 1.48505 * 109.46476 * 209.99796 * 8 6 4 11 11 H 1.48496 * 109.47404 * 329.99535 * 8 6 4 12 12 N 1.46492 * 109.47118 * 120.00005 * 2 1 3 13 13 C 1.46499 * 120.00314 * 59.99875 * 12 2 1 14 14 C 1.34783 * 120.00162 * 240.00098 * 12 2 1 15 15 O 1.21728 * 119.99499 * 353.94719 * 14 12 2 16 16 C 1.46431 * 120.00008 * 174.21902 * 14 12 2 17 17 C 1.35880 * 124.99252 * 171.92240 * 16 14 12 18 18 C 1.38728 * 115.20592 * 179.82817 * 17 16 14 19 19 O 1.36633 * 139.74308 * 180.02562 * 18 17 16 20 20 C 1.34073 * 109.73743 * 180.37254 * 19 18 17 21 21 C 1.34219 * 109.48929 * 0.02562 * 20 19 18 22 22 C 1.38039 * 113.38048 * 0.45548 * 18 17 16 23 23 S 1.75649 * 124.99749 * 352.23055 * 16 14 12 24 24 H 1.08996 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47109 * 300.00134 * 1 2 3 26 26 H 1.08997 * 109.47042 * 60.00088 * 1 2 3 27 27 H 0.96998 * 119.99638 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47568 * 264.45207 * 13 12 2 29 29 H 1.08997 * 109.47054 * 24.44891 * 13 12 2 30 30 H 1.08997 * 109.47450 * 144.44882 * 13 12 2 31 31 H 1.07995 * 122.39311 * 0.02562 * 17 16 14 32 32 H 1.08002 * 125.25497 * 179.97438 * 20 19 18 33 33 H 1.07998 * 126.50903 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9437 0.8303 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.1783 1.0929 1.8384 16 6 3.1767 -0.6837 3.3392 17 6 4.0736 -0.1864 4.2305 18 6 4.2821 -0.9681 5.3575 19 8 5.0202 -0.9641 6.5073 20 6 4.7591 -2.0714 7.2167 21 6 3.8578 -2.8204 6.5624 22 6 3.5370 -2.1301 5.3636 23 16 2.5505 -2.2219 3.9112 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7091 1.1614 -3.4844 28 1 0.7936 -2.1449 2.0816 29 1 1.4334 -2.5717 0.4764 30 1 2.5029 -2.6064 1.8986 31 1 4.5851 0.7518 4.0743 32 1 5.2058 -2.3224 8.1675 33 1 3.4530 -3.7678 6.8863 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609875607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:26 Heat of formation + Delta-G solvation = -2.195926 kcal Electronic energy + Delta-G solvation = -19078.813661 eV Core-core repulsion = 16004.875300 eV Total energy + Delta-G solvation = -3073.938361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.43545 -40.89335 -37.56122 -36.72729 -34.91820 -33.48085 -31.73880 -29.38918 -27.95430 -27.31034 -25.58673 -23.86929 -22.51829 -21.36354 -20.10995 -19.39990 -18.56060 -17.92994 -17.26472 -17.22495 -16.47840 -16.43068 -16.21015 -15.71406 -14.96239 -14.53824 -14.26417 -14.15496 -13.77161 -13.63430 -13.47712 -13.20956 -13.03272 -12.95942 -12.72008 -12.68541 -12.23564 -12.13924 -11.72139 -11.23599 -11.21361 -11.02032 -10.52869 -9.59364 -9.43637 -8.94226 -8.15398 -6.32049 -0.74391 0.23366 0.79563 1.08174 1.41499 1.42769 1.44755 1.54173 1.62206 2.09139 2.26421 2.45889 3.13280 3.52823 3.64933 3.92091 4.14540 4.19451 4.47823 4.52969 4.68257 4.69798 4.79897 4.87277 4.88355 4.91267 5.02234 5.37792 5.43827 5.50922 5.63459 5.90212 5.98844 6.12846 6.60020 6.73962 7.13105 7.39846 8.89425 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.036534 B = 0.004289 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.226755 B = 6526.177890 C = 6639.850716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.589 5.589 13 C 0.061 3.939 14 C 0.569 3.431 15 O -0.589 6.589 16 C -0.256 4.256 17 C -0.032 4.032 18 C -0.034 4.034 19 O -0.182 6.182 20 C 0.033 3.967 21 C -0.192 4.192 22 C -0.250 4.250 23 S 0.277 5.723 24 H 0.052 0.948 25 H 0.021 0.979 26 H 0.071 0.929 27 H 0.266 0.734 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.265 0.735 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 -12.258 18.560 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.580 4.580 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.791 3.209 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.318 5.318 13 C -0.083 4.083 14 C 0.357 3.643 15 O -0.472 6.472 16 C -0.375 4.375 17 C -0.067 4.067 18 C -0.089 4.089 19 O -0.082 6.082 20 C -0.036 4.036 21 C -0.214 4.214 22 C -0.368 4.368 23 S 0.544 5.456 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.164 0.836 32 H 0.281 0.719 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.349 -12.393 17.741 21.768 hybrid contribution 1.270 1.190 -0.514 1.815 sum 3.619 -11.202 17.227 20.865 Atomic orbital electron populations 1.21900 0.96410 1.00597 1.00252 1.18683 0.91992 0.92304 0.80929 0.96904 1.21545 1.32211 1.13285 0.90949 0.91905 1.25714 0.94958 0.95569 1.01955 1.70013 1.37156 1.23723 1.24556 0.85435 0.78847 0.78276 0.78331 1.18974 1.21221 1.19701 1.48088 1.48347 1.12953 1.22428 1.22059 1.01361 0.80980 1.03930 1.17335 0.78862 0.85234 0.82822 1.90758 1.56912 1.21007 1.78538 1.23802 1.08838 1.03978 1.00885 1.19007 0.97699 1.00411 0.89620 1.19118 1.00298 0.98214 0.91237 1.84334 1.55377 1.41472 1.27001 1.25227 0.97334 0.82878 0.98210 1.21440 1.03425 1.04045 0.92511 1.25422 1.06456 1.00393 1.04500 1.84045 1.41316 1.14051 1.06198 0.92931 0.95952 0.90988 0.92526 0.90085 0.88067 0.89860 0.83630 0.71935 0.79376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.97 71.98 0.65 -5.71 16 2 C 0.26 13.78 2.62 44.25 0.12 13.90 16 3 H 0.01 0.81 6.91 -2.39 -0.02 0.80 16 4 C -0.54 -29.38 7.95 25.60 0.20 -29.17 16 5 H 0.06 3.30 7.43 -2.91 -0.02 3.28 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -52.46 11.32 21.45 0.24 -52.21 16 8 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.59 -25.97 2.75 -831.80 -2.29 -28.26 16 13 C 0.06 1.98 7.76 127.77 0.99 2.97 16 14 C 0.57 25.84 7.62 86.38 0.66 26.50 16 15 O -0.59 -32.02 16.14 -4.44 -0.07 -32.09 16 16 C -0.26 -9.11 6.14 23.86 0.15 -8.96 16 17 C -0.03 -1.08 9.88 21.84 0.22 -0.87 16 18 C -0.03 -0.99 7.79 22.34 0.17 -0.81 16 19 O -0.18 -4.32 10.72 -25.43 -0.27 -4.59 16 20 C 0.03 0.46 12.00 66.90 0.80 1.26 16 21 C -0.19 -3.13 10.91 22.28 0.24 -2.89 16 22 C -0.25 -6.18 7.35 23.16 0.17 -6.01 16 23 S 0.28 7.08 18.02 -56.49 -1.02 6.06 16 24 H 0.05 2.23 7.67 -2.39 -0.02 2.21 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 27 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.08 2.19 7.48 -2.39 -0.02 2.17 16 29 H 0.10 3.34 7.11 -2.39 -0.02 3.33 16 30 H 0.08 2.35 5.09 -18.33 -0.09 2.26 16 31 H 0.15 5.01 8.02 -2.91 -0.02 4.99 16 32 H 0.27 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -73.01 292.46 4.50 -68.52 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.06 Total: 6.15 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.82 Total: -8.37 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.05 Total: -80.47 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.34 Total: -36.68 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -1.02 Total: 6.06 kcal Total: -73.01 4.50 -68.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609875607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.320 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds