Wall clock time and date at job start Tue Mar 31 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29026 * 124.91788 * 2 1 4 4 C 1.31782 * 117.12507 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.74809 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46950 * 305.01818 * 5 4 3 7 7 C 1.50703 * 109.46841 * 180.02562 * 6 5 4 8 8 O 1.21291 * 120.00388 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99573 * 180.02562 * 7 6 5 10 10 C 1.37104 * 119.99899 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99778 * 20.21816 * 10 9 7 12 12 C 1.38948 * 120.00124 * 200.21293 * 10 9 7 13 13 N 1.31408 * 119.99749 * 21.43686 * 12 10 9 14 14 Si 1.86797 * 119.99981 * 201.43907 * 12 10 9 15 15 H 1.48501 * 109.47087 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47171 * 120.00053 * 14 12 10 17 17 H 1.48496 * 109.46871 * 239.99977 * 14 12 10 18 18 C 1.46502 * 120.00078 * 359.97438 * 9 7 6 19 19 C 1.47192 * 109.47051 * 83.95377 * 18 9 7 20 20 N 6.42421 * 93.41859 * 339.10968 * 2 1 3 21 21 C 1.33644 * 114.49971 * 0.22420 * 4 3 2 22 22 S 1.70982 * 124.91369 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46967 * 90.00766 * 1 2 3 24 24 H 1.08996 * 109.46995 * 210.00016 * 1 2 3 25 25 H 1.08993 * 109.46860 * 330.00323 * 1 2 3 26 26 H 1.09003 * 109.46776 * 185.01904 * 5 4 3 27 27 H 1.09002 * 109.47762 * 65.01628 * 5 4 3 28 28 H 1.09000 * 109.46856 * 299.99917 * 6 5 4 29 29 H 1.08995 * 109.47364 * 60.00059 * 6 5 4 30 30 H 0.97007 * 119.99938 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.46840 * 203.95433 * 18 9 7 32 32 H 1.09001 * 109.47292 * 323.94781 * 18 9 7 33 33 H 1.07999 * 126.03599 * 179.77246 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0245 -0.0012 6 6 4.2326 2.9499 -1.1826 7 6 5.2126 4.0948 -1.1836 8 8 6.0652 4.1641 -0.3237 9 7 5.1409 5.0423 -2.1394 10 6 6.0321 6.0842 -2.1401 11 1 6.9673 5.9951 -1.6075 12 6 5.7320 7.2547 -2.8260 13 7 4.4829 7.5479 -3.1100 14 14 7.1041 8.4112 -3.3447 15 1 8.4105 7.8566 -2.9078 16 1 7.0967 8.5568 -4.8225 17 1 6.8957 9.7400 -2.7154 18 6 4.1107 4.9588 -3.1777 19 6 2.8571 5.5421 -2.6730 20 7 1.8901 5.9912 -2.2867 21 6 3.9354 -0.4007 -0.0058 22 16 2.4856 -1.4021 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 5.5448 1.6351 -0.0914 27 1 4.4375 2.5830 0.9303 28 1 4.3259 2.3914 -2.1140 29 1 3.2186 3.3392 -1.0924 30 1 4.2733 8.3653 -3.5885 31 1 4.4384 5.5093 -4.0597 32 1 3.9451 3.9144 -3.4422 33 1 4.9545 -0.7582 -0.0105 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733146321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:38 Heat of formation + Delta-G solvation = 38.990325 kcal Electronic energy + Delta-G solvation = -18807.414427 eV Core-core repulsion = 15767.554788 eV Total energy + Delta-G solvation = -3039.859640 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96657 -38.74095 -35.80372 -34.38430 -33.56821 -31.89650 -30.91347 -28.33516 -27.40246 -25.78696 -23.93792 -22.22974 -19.68232 -19.03392 -17.86726 -17.41788 -16.50219 -16.18173 -15.22430 -15.14214 -14.59230 -14.36078 -14.16879 -13.66143 -13.30156 -13.00033 -12.91477 -12.62434 -12.46326 -12.26102 -11.93801 -11.59052 -11.47306 -11.37285 -11.14682 -11.09004 -10.68906 -10.50260 -10.35472 -10.25691 -9.59719 -9.42087 -9.23327 -8.72657 -8.49389 -7.99105 -6.47080 -3.97828 0.70483 1.33785 1.70285 2.82816 3.10727 3.24012 3.30207 3.61131 3.86406 4.05303 4.05909 4.16487 4.77525 4.91501 4.96274 5.21583 5.22278 5.27891 5.31156 5.34336 5.54292 5.69241 5.75113 5.79602 5.97273 6.20622 6.22825 6.44302 6.49530 6.54341 7.50205 7.80791 7.95337 8.31476 8.81606 9.03624 9.23269 9.78075 10.59323 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.030443 B = 0.004146 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.542667 B = 6751.174715 C = 7438.549336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 N -0.464 5.464 4 C 0.082 3.918 5 C -0.026 4.026 6 C -0.127 4.127 7 C 0.458 3.542 8 O -0.575 6.575 9 N -0.445 5.445 10 C -0.314 4.314 11 H 0.108 0.892 12 C 0.032 3.968 13 N -0.876 5.876 14 Si 0.925 3.075 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.283 1.283 18 C 0.223 3.777 19 C 0.246 3.754 20 N -0.470 5.470 21 C -0.260 4.260 22 S 0.090 5.910 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.272 0.728 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 -16.973 0.206 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.227 4.227 3 N -0.179 5.179 4 C -0.049 4.049 5 C -0.066 4.066 6 C -0.168 4.168 7 C 0.247 3.753 8 O -0.458 6.458 9 N -0.165 5.165 10 C -0.441 4.441 11 H 0.125 0.875 12 C -0.172 4.172 13 N -0.514 5.514 14 Si 0.752 3.248 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.209 1.209 18 C 0.095 3.905 19 C -0.073 4.073 20 N -0.150 5.150 21 C -0.398 4.398 22 S 0.344 5.656 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.919 -16.678 1.111 17.733 hybrid contribution 1.460 1.356 -0.540 2.065 sum -4.459 -15.322 0.570 15.968 Atomic orbital electron populations 1.20445 0.85311 1.04102 1.03935 1.27073 1.01725 0.90730 1.03190 1.66122 1.04768 1.31328 1.15711 1.20520 0.90054 0.94551 0.99776 1.19934 0.95187 0.91535 0.99963 1.21518 1.00497 0.95982 0.98790 1.20169 0.87300 0.85608 0.82207 1.90534 1.38975 1.78624 1.37652 1.43633 1.27502 1.22573 1.22789 1.19731 0.98999 0.92350 1.33053 0.87471 1.25291 0.96812 0.97175 0.97924 1.69866 1.16632 1.25685 1.39262 0.85881 0.81160 0.79534 0.78258 1.19111 1.20502 1.20926 1.18666 0.80488 0.98103 0.93231 1.29155 0.93354 0.91571 0.93209 1.80797 1.14831 1.10845 1.08566 1.26808 1.02825 0.95507 1.14687 1.83812 0.98683 1.13461 1.69658 0.89547 0.90281 0.89188 0.89494 0.89467 0.90304 0.89432 0.91741 0.85946 0.89874 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.46 36.01 0.38 -0.29 16 2 C 0.05 0.63 7.39 -13.46 -0.10 0.53 16 3 N -0.46 -7.14 10.34 -8.06 -0.08 -7.22 16 4 C 0.08 1.21 6.08 -84.23 -0.51 0.70 16 5 C -0.03 -0.42 5.00 -27.88 -0.14 -0.56 16 6 C -0.13 -2.29 4.21 -27.88 -0.12 -2.40 16 7 C 0.46 10.46 7.56 -10.98 -0.08 10.38 16 8 O -0.57 -14.93 15.65 5.55 0.09 -14.85 16 9 N -0.44 -10.50 2.60 -117.93 -0.31 -10.81 16 10 C -0.31 -8.17 9.27 -14.93 -0.14 -8.30 16 11 H 0.11 2.93 7.43 -52.49 -0.39 2.54 16 12 C 0.03 0.79 4.84 -17.47 -0.08 0.71 16 13 N -0.88 -22.52 9.58 55.50 0.53 -21.99 16 14 Si 0.93 19.76 29.60 -169.99 -5.03 14.73 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 18 C 0.22 4.50 4.91 -6.83 -0.03 4.47 16 19 C 0.25 5.59 12.81 -20.83 -0.27 5.32 16 20 N -0.47 -11.54 18.52 42.08 0.78 -10.76 16 21 C -0.26 -3.13 11.07 29.12 0.32 -2.81 16 22 S 0.09 0.92 23.18 -107.50 -2.49 -1.57 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.33 7.98 -51.93 -0.41 0.92 16 27 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 28 H 0.08 1.22 7.42 -51.93 -0.39 0.83 16 29 H 0.09 1.68 7.42 -51.93 -0.39 1.29 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 31 H 0.12 2.50 6.63 -51.93 -0.34 2.16 16 32 H 0.08 1.31 6.70 -51.93 -0.35 0.96 16 33 H 0.18 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -32.16 306.88 -6.18 -38.34 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.51 Total: 1.76 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -0.78 Total: 7.73 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.92 Total: -50.78 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.57 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.16 -6.18 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733146321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.334 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds