Wall clock time and date at job start Tue Mar 31 2020 00:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.31826 * 126.52163 * 146.20310 * 3 2 1 5 5 N 1.28467 * 110.07468 * 180.29417 * 4 3 2 6 6 C 1.46501 * 124.87461 * 179.68896 * 5 4 3 7 7 C 1.50697 * 109.47528 * 305.02665 * 6 5 4 8 8 O 1.21283 * 120.00069 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99833 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99667 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46873 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99807 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99939 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99753 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47522 * 59.99988 * 15 13 11 17 17 H 1.48503 * 109.46990 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47253 * 299.99741 * 15 13 11 19 19 C 1.35020 * 110.24215 * 359.71697 * 5 4 3 20 20 C 1.35374 * 107.23200 * 359.97438 * 19 5 4 21 21 N 1.48029 * 127.25270 * 180.02562 * 20 19 5 22 22 O 1.21803 * 119.99705 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00092 * 179.72410 * 21 20 19 24 24 H 1.08999 * 109.46659 * 65.03270 * 6 5 4 25 25 H 1.09006 * 109.46650 * 185.02882 * 6 5 4 26 26 H 0.96997 * 120.00068 * 0.02562 * 9 7 6 27 27 H 1.08999 * 109.47537 * 299.99716 * 10 9 7 28 28 H 1.08996 * 109.47153 * 60.00143 * 10 9 7 29 29 H 0.97001 * 120.00169 * 179.97438 * 14 13 11 30 30 H 1.08001 * 126.38022 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3521 0.8814 -0.5893 5 7 4.5843 0.5762 -0.3921 6 6 5.7277 1.3329 -0.9084 7 6 5.6036 1.4728 -2.4038 8 8 4.6534 0.9885 -2.9814 9 7 6.5485 2.1360 -3.0992 10 6 6.4276 2.2724 -4.5528 11 6 7.6038 3.0507 -5.0838 12 1 8.3650 3.4083 -4.4062 13 6 7.7081 3.3063 -6.4348 14 7 6.7815 2.8704 -7.2599 15 14 9.1664 4.2703 -7.0930 16 1 10.4237 3.5511 -6.7658 17 1 9.0438 4.4087 -8.5665 18 1 9.1907 5.6181 -6.4700 19 6 4.6742 -0.5423 0.3588 20 6 3.4108 -0.9419 0.6359 21 7 2.9978 -2.1202 1.4310 22 8 3.8408 -2.8526 1.9173 23 8 1.8150 -2.3548 1.6028 24 1 5.7450 2.3221 -0.4511 25 1 6.6508 0.8053 -0.6682 26 1 7.3086 2.5229 -2.6373 27 1 6.4096 1.2833 -5.0104 28 1 5.5048 2.8006 -4.7926 29 1 6.8546 3.0505 -8.2102 30 1 5.5845 -1.0273 0.6792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189796607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:06 Heat of formation + Delta-G solvation = 82.033357 kcal Electronic energy + Delta-G solvation = -20150.590286 eV Core-core repulsion = 16566.303918 eV Total energy + Delta-G solvation = -3584.286368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.080 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.88853 -42.02367 -39.27463 -36.98674 -36.61892 -34.67654 -34.20423 -32.62660 -32.20975 -29.56843 -27.30888 -26.83492 -24.04609 -22.64412 -22.22871 -20.42776 -19.96090 -18.92991 -18.38273 -18.09636 -17.63401 -17.00679 -16.46811 -15.67378 -15.26718 -15.18811 -14.88365 -14.32080 -13.76066 -13.50496 -13.16604 -13.08525 -13.01150 -12.19456 -12.10708 -11.91781 -11.73960 -11.32913 -11.31519 -11.18883 -11.02562 -10.53580 -10.41907 -10.24872 -9.64896 -9.50798 -8.97461 -8.27758 -6.34571 -4.43868 -0.17519 0.75395 0.89476 1.45913 1.63508 2.26198 2.68932 3.06207 3.10084 3.13037 3.18827 3.20257 3.41660 3.69927 4.00463 4.18120 4.25523 4.48473 4.54361 4.83174 4.89444 5.02088 5.62841 6.07753 6.89245 6.95456 6.97837 7.10597 7.23714 7.38284 7.43899 7.73736 8.16330 8.41414 8.67547 9.23373 10.75240 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.003140 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.920280 B = 8915.647802 C = 9348.701380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C 0.289 3.711 3 C 0.161 3.839 4 N -0.183 5.183 5 N -0.244 5.244 6 C 0.090 3.910 7 C 0.483 3.517 8 O -0.525 6.525 9 N -0.699 5.699 10 C 0.251 3.749 11 C -0.551 4.551 12 H 0.064 0.936 13 C 0.066 3.934 14 N -0.883 5.883 15 Si 0.906 3.094 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.101 3.899 20 C -0.129 4.129 21 N 0.067 4.933 22 O -0.152 6.152 23 O -0.152 6.152 24 H 0.137 0.863 25 H 0.145 0.855 26 H 0.395 0.605 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.269 0.731 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -3.751 16.822 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.032 5.032 2 C -0.029 4.029 3 C -0.003 4.003 4 N -0.016 5.016 5 N -0.028 5.028 6 C -0.033 4.033 7 C 0.264 3.736 8 O -0.402 6.402 9 N -0.348 5.348 10 C 0.131 3.869 11 C -0.589 4.589 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.519 5.519 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.048 4.048 20 C -0.226 4.226 21 N 0.587 4.413 22 O -0.368 6.368 23 O -0.367 6.367 24 H 0.155 0.845 25 H 0.163 0.837 26 H 0.228 0.772 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.016 -2.448 15.034 15.232 hybrid contribution 1.633 -0.250 0.313 1.682 sum 1.649 -2.699 15.346 15.669 Atomic orbital electron populations 1.81258 1.10353 1.05611 1.05985 1.23209 0.89635 0.95068 0.95032 1.16506 0.87877 0.94466 1.01449 1.74166 0.89218 1.21947 1.16233 1.45081 1.05415 1.18488 1.33849 1.22425 0.84802 0.99474 0.96551 1.19980 0.84728 0.81471 0.87385 1.90826 1.31382 1.48014 1.69938 1.46421 1.23542 1.53226 1.11607 1.19233 0.98045 0.97740 0.71893 1.21117 1.07753 1.36933 0.93118 0.91743 1.24955 0.96708 0.95601 0.96619 1.69948 1.33495 1.44392 1.04084 0.86434 0.82034 0.80213 0.78017 1.19966 1.20968 1.19970 1.22654 0.99090 0.88904 0.94125 1.20924 0.94031 0.96007 1.11683 1.42244 1.00791 0.99742 0.98475 1.94557 1.47650 1.44583 1.49981 1.94624 1.00806 1.77236 1.64081 0.84509 0.83717 0.77210 0.95151 0.95073 0.92128 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.35 -5.52 18.54 41.84 0.78 -4.74 16 2 C 0.29 4.18 14.82 -22.47 -0.33 3.84 16 3 C 0.16 2.10 7.00 -84.69 -0.59 1.51 16 4 N -0.18 -2.45 10.89 32.41 0.35 -2.09 16 5 N -0.24 -2.39 3.17 -62.51 -0.20 -2.59 16 6 C 0.09 0.67 6.88 -5.19 -0.04 0.63 16 7 C 0.48 7.15 7.83 -10.99 -0.09 7.06 16 8 O -0.53 -10.69 15.64 5.55 0.09 -10.60 16 9 N -0.70 -11.35 5.55 -61.47 -0.34 -11.69 16 10 C 0.25 5.84 5.43 -5.19 -0.03 5.81 16 11 C -0.55 -13.43 9.28 -34.44 -0.32 -13.75 16 12 H 0.06 1.43 7.60 -52.49 -0.40 1.03 16 13 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.88 -24.50 13.29 55.43 0.74 -23.76 16 15 Si 0.91 19.37 29.54 -169.99 -5.02 14.35 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 C 0.10 0.79 11.15 -17.17 -0.19 0.60 16 20 C -0.13 -1.45 7.25 -79.71 -0.58 -2.02 16 21 N 0.07 0.85 4.45 34.08 0.15 1.00 16 22 O -0.15 -1.84 19.07 -29.46 -0.56 -2.40 16 23 O -0.15 -2.19 18.12 -29.46 -0.53 -2.73 16 24 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.15 0.35 8.04 -51.93 -0.42 -0.07 16 26 H 0.39 4.89 8.32 -40.82 -0.34 4.55 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.22 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -34.16 299.43 -4.28 -38.45 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -1.98 Total: -2.99 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -2.26 Total: 5.28 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 1.48 Total: -43.87 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.01 Total: -15.73 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.16 -4.28 -38.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189796607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.479 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds