Wall clock time and date at job start Tue Mar 31 2020 00:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.31826 * 126.52163 * 146.20310 * 3 2 1 5 5 N 1.28467 * 110.07468 * 180.29417 * 4 3 2 6 6 C 1.46501 * 124.87461 * 179.68896 * 5 4 3 7 7 C 1.50697 * 109.47528 * 305.02665 * 6 5 4 8 8 O 1.21283 * 120.00069 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99833 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99667 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46873 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99807 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99939 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99753 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47522 * 59.99988 * 15 13 11 17 17 H 1.48503 * 109.46990 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47253 * 299.99741 * 15 13 11 19 19 C 1.35020 * 110.24215 * 359.71697 * 5 4 3 20 20 C 1.35374 * 107.23200 * 359.97438 * 19 5 4 21 21 N 1.48029 * 127.25270 * 180.02562 * 20 19 5 22 22 O 1.21803 * 119.99705 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00092 * 179.72410 * 21 20 19 24 24 H 1.08999 * 109.46659 * 65.03270 * 6 5 4 25 25 H 1.09006 * 109.46650 * 185.02882 * 6 5 4 26 26 H 0.96997 * 120.00068 * 0.02562 * 9 7 6 27 27 H 1.08999 * 109.47537 * 299.99716 * 10 9 7 28 28 H 1.08996 * 109.47153 * 60.00143 * 10 9 7 29 29 H 0.97001 * 120.00169 * 179.97438 * 14 13 11 30 30 H 1.08001 * 126.38022 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3521 0.8814 -0.5893 5 7 4.5843 0.5762 -0.3921 6 6 5.7277 1.3329 -0.9084 7 6 5.6036 1.4728 -2.4038 8 8 4.6534 0.9885 -2.9814 9 7 6.5485 2.1360 -3.0992 10 6 6.4276 2.2724 -4.5528 11 6 7.6038 3.0507 -5.0838 12 1 8.3650 3.4083 -4.4062 13 6 7.7081 3.3063 -6.4348 14 7 6.7815 2.8704 -7.2599 15 14 9.1664 4.2703 -7.0930 16 1 10.4237 3.5511 -6.7658 17 1 9.0438 4.4087 -8.5665 18 1 9.1907 5.6181 -6.4700 19 6 4.6742 -0.5423 0.3588 20 6 3.4108 -0.9419 0.6359 21 7 2.9978 -2.1202 1.4310 22 8 3.8408 -2.8526 1.9173 23 8 1.8150 -2.3548 1.6028 24 1 5.7450 2.3221 -0.4511 25 1 6.6508 0.8053 -0.6682 26 1 7.3086 2.5229 -2.6373 27 1 6.4096 1.2833 -5.0104 28 1 5.5048 2.8006 -4.7926 29 1 6.8546 3.0505 -8.2102 30 1 5.5845 -1.0273 0.6792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189796607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:05 Heat of formation + Delta-G solvation = 55.527926 kcal Electronic energy + Delta-G solvation = -20151.739648 eV Core-core repulsion = 16566.303918 eV Total energy + Delta-G solvation = -3585.435730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.080 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.71354 -42.95652 -40.55387 -38.08913 -37.61030 -36.25260 -35.13302 -34.38757 -33.05432 -30.67400 -28.80999 -27.81432 -25.35846 -24.04221 -23.12901 -21.64698 -20.88044 -19.90781 -19.41928 -19.04518 -18.73038 -17.99872 -17.78714 -16.92454 -16.74169 -16.41155 -15.81538 -15.61875 -14.96076 -14.68034 -14.45695 -14.25571 -14.11020 -13.99546 -13.37893 -12.95899 -12.93568 -12.69190 -12.65770 -12.31752 -12.26552 -12.24043 -11.51606 -11.37317 -11.17660 -10.79746 -10.67286 -9.90853 -8.29209 -6.45622 -1.07537 -0.09891 0.02107 0.61350 0.81725 1.23040 1.45879 1.48360 1.56637 1.57668 1.98268 2.10714 2.33269 2.48079 2.91767 3.07199 3.29335 3.57374 3.76116 3.95911 4.11352 4.14394 4.93726 5.11216 5.17044 5.23302 5.43266 5.63976 5.83661 5.94860 6.08816 6.46581 6.65477 6.77333 7.23501 7.40936 8.82358 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.003140 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.920280 B = 8915.647802 C = 9348.701380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.297 3.703 3 C 0.142 3.858 4 N -0.217 5.217 5 N -0.247 5.247 6 C 0.104 3.896 7 C 0.478 3.522 8 O -0.589 6.589 9 N -0.693 5.693 10 C 0.267 3.733 11 C -0.553 4.553 12 H 0.092 0.908 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.981 3.019 16 H -0.259 1.259 17 H -0.293 1.293 18 H -0.262 1.262 19 C 0.149 3.851 20 C -0.148 4.148 21 N 0.069 4.931 22 O -0.110 6.110 23 O -0.223 6.223 24 H 0.178 0.822 25 H 0.215 0.785 26 H 0.418 0.582 27 H -0.010 1.010 28 H -0.015 1.015 29 H 0.267 0.733 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -3.279 19.114 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.021 4.021 3 C -0.021 4.021 4 N -0.049 5.049 5 N -0.031 5.031 6 C -0.016 4.016 7 C 0.264 3.736 8 O -0.469 6.469 9 N -0.344 5.344 10 C 0.144 3.856 11 C -0.591 4.591 12 H 0.110 0.890 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.805 3.195 16 H -0.183 1.183 17 H -0.219 1.219 18 H -0.186 1.186 19 C 0.000 4.000 20 C -0.246 4.246 21 N 0.587 4.413 22 O -0.340 6.340 23 O -0.421 6.421 24 H 0.196 0.804 25 H 0.232 0.768 26 H 0.255 0.745 27 H 0.008 0.992 28 H 0.003 0.997 29 H 0.076 0.924 30 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 4.152 -1.933 17.381 17.975 hybrid contribution 0.452 -0.437 -0.368 0.728 sum 4.604 -2.370 17.013 17.784 Atomic orbital electron populations 1.81227 1.11421 1.06878 1.07309 1.23629 0.90362 0.94044 0.94033 1.16547 0.87208 0.95755 1.02623 1.74122 0.91072 1.22834 1.16897 1.45387 1.04660 1.19226 1.33852 1.22776 0.86115 1.02971 0.89722 1.21211 0.82667 0.79034 0.90729 1.90817 1.33665 1.50087 1.72360 1.45979 1.25271 1.54227 1.08930 1.18533 0.96000 0.94760 0.76330 1.21622 1.08047 1.35815 0.93587 0.88971 1.26046 0.99598 0.96741 0.97319 1.70129 1.36164 1.46636 1.04296 0.85257 0.78578 0.79098 0.76613 1.18315 1.21919 1.18629 1.23567 0.99418 0.86438 0.90550 1.21017 0.95083 0.95756 1.12739 1.42372 1.00522 1.00044 0.98366 1.94505 1.47176 1.44080 1.48197 1.94660 1.01540 1.78867 1.67007 0.80433 0.76801 0.74457 0.99245 0.99721 0.92426 0.70357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -13.01 18.54 19.00 0.35 -12.65 16 2 C 0.30 9.08 14.82 88.33 1.31 10.38 16 3 C 0.14 3.69 7.00 41.20 0.29 3.98 16 4 N -0.22 -5.49 10.89 -51.36 -0.56 -6.05 16 5 N -0.25 -3.77 3.17 -351.68 -1.11 -4.89 16 6 C 0.10 0.93 6.88 85.63 0.59 1.52 16 7 C 0.48 13.07 7.83 87.66 0.69 13.76 16 8 O -0.59 -24.21 15.64 -3.04 -0.05 -24.25 16 9 N -0.69 -21.21 5.55 -466.79 -2.59 -23.80 16 10 C 0.27 12.74 5.43 85.63 0.46 13.20 16 11 C -0.55 -26.58 9.28 25.60 0.24 -26.34 16 12 H 0.09 3.81 7.60 -2.91 -0.02 3.78 16 13 C 0.00 0.13 5.46 84.66 0.46 0.60 16 14 N -0.93 -53.59 13.29 21.45 0.28 -53.30 16 15 Si 0.98 39.04 29.54 68.60 2.03 41.07 16 16 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 17 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 19 C 0.15 1.51 11.15 83.54 0.93 2.44 16 20 C -0.15 -2.98 7.25 36.52 0.26 -2.71 16 21 N 0.07 1.66 4.45 -46.09 -0.21 1.45 16 22 O -0.11 -2.30 19.07 18.88 0.36 -1.94 16 23 O -0.22 -6.65 18.12 18.89 0.34 -6.30 16 24 H 0.18 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.22 -0.95 8.04 -2.38 -0.02 -0.96 16 26 H 0.42 8.70 8.32 -92.71 -0.77 7.93 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 28 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.74 16 30 H 0.28 -0.86 8.06 -2.91 -0.02 -0.89 16 Total: -1.00 -85.19 299.43 4.54 -80.66 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: 0.46 Total: -6.81 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.23 Total: 16.82 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -3.83 Total: -99.24 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: 0.65 Total: -32.50 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -85.19 4.54 -80.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189796607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.184 kcal (2) G-P(sol) polarization free energy of solvation -85.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds