Wall clock time and date at job start Tue Mar 31 2020 00:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47076 * 2 1 4 4 C 1.50696 * 109.47011 * 119.99763 * 2 1 3 5 5 N 1.30324 * 126.16323 * 75.02756 * 4 2 1 6 6 N 1.28659 * 109.58916 * 179.97438 * 5 4 2 7 7 C 1.31533 * 109.22951 * 359.97438 * 6 5 4 8 8 C 1.47047 * 126.41294 * 180.02562 * 7 6 5 9 9 C 1.36160 * 125.33509 * 359.97438 * 8 7 6 10 10 C 1.37743 * 114.44412 * 179.97438 * 9 8 7 11 11 C 1.33696 * 115.19391 * 0.02562 * 10 9 8 12 12 S 1.75835 * 109.95847 * 359.73452 * 11 10 9 13 13 O 1.34559 * 126.16161 * 254.71717 * 4 2 1 14 14 N 1.46498 * 109.47496 * 239.99978 * 2 1 3 15 15 C 1.46503 * 119.99510 * 300.00269 * 14 2 1 16 16 C 1.36933 * 120.00210 * 119.99548 * 14 2 1 17 17 H 1.08004 * 119.99884 * 21.72902 * 16 14 2 18 18 C 1.38808 * 119.99989 * 201.72405 * 16 14 2 19 19 N 1.31610 * 120.00486 * 11.57091 * 18 16 14 20 20 Si 1.86806 * 119.99737 * 191.57236 * 18 16 14 21 21 H 1.48500 * 109.47291 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46910 * 120.00029 * 20 18 16 23 23 H 1.48497 * 109.47057 * 240.00018 * 20 18 16 24 24 H 1.09007 * 109.46993 * 60.00038 * 1 2 3 25 25 H 1.09002 * 109.47076 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47526 * 300.00099 * 1 2 3 27 27 H 1.07996 * 122.77395 * 0.02562 * 9 8 7 28 28 H 1.08002 * 122.39954 * 179.97438 * 10 9 8 29 29 H 1.07999 * 125.02556 * 179.97438 * 11 10 9 30 30 H 1.09001 * 109.47207 * 95.31333 * 15 14 2 31 31 H 1.09004 * 109.46716 * 215.30642 * 15 14 2 32 32 H 1.08994 * 109.47078 * 335.30545 * 15 14 2 33 33 H 0.96998 * 120.00784 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.0323 -1.9984 1.4287 6 7 2.5332 -2.2569 2.5852 7 6 2.8744 -1.1298 3.1712 8 6 3.4822 -0.9873 4.5026 9 6 3.7879 -2.0144 5.3427 10 6 4.3521 -1.6249 6.5374 11 6 4.5117 -0.3061 6.6882 12 16 3.9349 0.5360 5.2564 13 8 2.5669 -0.1293 2.3200 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.8056 -0.0251 -2.0975 17 1 3.3527 0.8542 -1.7909 18 6 2.9005 -0.4806 -3.4053 19 7 2.0705 -1.4037 -3.8426 20 14 4.2065 0.2165 -4.5446 21 1 5.0075 1.2329 -3.8163 22 1 5.0977 -0.8787 -5.0046 23 1 3.5528 0.8488 -5.7185 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.6039 -3.0487 5.0926 28 1 4.6438 -2.3339 7.2980 29 1 4.9360 0.1714 7.5591 30 1 0.7911 -2.1449 -2.0781 31 1 2.5014 -2.6055 -1.9024 32 1 1.4375 -2.5727 -0.4758 33 1 2.1371 -1.7223 -4.7563 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:38 Heat of formation + Delta-G solvation = 105.973346 kcal Electronic energy + Delta-G solvation = -18985.751593 eV Core-core repulsion = 15948.796555 eV Total energy + Delta-G solvation = -3036.955038 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.60434 -37.94644 -36.51855 -35.64862 -32.83495 -31.49127 -29.41323 -28.20435 -26.08458 -25.08049 -24.27776 -22.75192 -22.52074 -20.17236 -19.22699 -18.34204 -16.95842 -16.87437 -16.14198 -15.84840 -15.13316 -14.47610 -14.14839 -13.75049 -13.40390 -12.98903 -12.95217 -12.60592 -12.49493 -11.95163 -11.72199 -11.60472 -11.46397 -11.16132 -10.98396 -10.91384 -10.85477 -10.51521 -10.18067 -10.13324 -9.87394 -9.79342 -8.78190 -8.69128 -8.33727 -7.02768 -5.84346 -3.34255 0.24315 1.19229 1.65808 1.76086 2.47159 2.52567 3.00726 3.32463 3.39593 3.41544 4.16229 4.39557 4.76246 4.91120 4.98902 5.28984 5.34394 5.35985 5.50248 5.67661 5.76555 5.82979 5.89853 6.00698 6.07026 6.13748 6.27845 6.48715 6.77651 7.08026 7.49984 7.68139 7.80232 8.23549 8.75941 9.07981 9.66858 10.13396 11.18854 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.004156 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.874717 B = 6735.887764 C = 7043.521887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.254 3.746 3 H 0.096 0.904 4 C 0.189 3.811 5 N -0.284 5.284 6 N -0.265 5.265 7 C 0.193 3.807 8 C -0.120 4.120 9 C -0.083 4.083 10 C -0.135 4.135 11 C -0.209 4.209 12 S 0.164 5.836 13 O -0.229 6.229 14 N -0.568 5.568 15 C 0.146 3.854 16 C -0.276 4.276 17 H 0.073 0.927 18 C 0.013 3.987 19 N -0.896 5.896 20 Si 0.910 3.090 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.287 1.287 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.171 0.829 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 3.246 19.166 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.139 3.861 3 H 0.114 0.886 4 C -0.024 4.024 5 N -0.130 5.130 6 N -0.114 5.114 7 C -0.016 4.016 8 C -0.239 4.239 9 C -0.117 4.117 10 C -0.165 4.165 11 C -0.346 4.346 12 S 0.428 5.572 13 O -0.108 6.108 14 N -0.287 5.287 15 C 0.002 3.998 16 C -0.405 4.405 17 H 0.091 0.909 18 C -0.187 4.187 19 N -0.539 5.539 20 Si 0.739 3.261 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.214 1.214 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.173 0.827 28 H 0.167 0.833 29 H 0.188 0.812 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.663 3.419 18.261 18.652 hybrid contribution 1.117 -0.036 -0.065 1.120 sum 2.780 3.383 18.196 18.715 Atomic orbital electron populations 1.22217 0.94401 1.02738 1.01576 1.19012 0.93215 0.94490 0.79370 0.88619 1.31146 0.92609 0.90176 0.88513 1.74404 1.17744 1.12958 1.07855 1.74819 1.12322 1.22469 1.01818 1.23907 1.02417 0.82824 0.92491 1.21301 1.10790 0.98442 0.93319 1.20640 0.98485 1.00173 0.92376 1.20028 1.02635 0.95590 0.98291 1.25953 1.08182 0.97837 1.02672 1.84456 1.57655 1.06354 1.08694 1.84970 1.61391 1.39054 1.25357 1.44067 1.57375 1.09486 1.17797 1.21139 0.99891 0.82118 0.96672 1.19299 1.20895 1.10775 0.89493 0.90924 1.25001 0.98381 0.98672 0.96611 1.70121 1.36087 1.31456 1.16205 0.86114 0.81022 0.78350 0.80572 1.20182 1.21386 1.21386 0.90410 0.92005 0.93475 0.82737 0.83312 0.81153 0.94691 0.93966 0.94573 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.18 37.16 0.34 -2.34 16 2 C 0.25 5.27 3.26 -69.09 -0.23 5.04 16 3 H 0.10 1.87 7.86 -51.93 -0.41 1.46 16 4 C 0.19 3.92 7.24 -12.92 -0.09 3.83 16 5 N -0.28 -6.22 9.61 32.59 0.31 -5.91 16 6 N -0.26 -5.37 12.23 31.95 0.39 -4.98 16 7 C 0.19 3.50 8.24 -14.11 -0.12 3.38 16 8 C -0.12 -1.69 6.46 -36.76 -0.24 -1.93 16 9 C -0.08 -0.97 10.12 -40.51 -0.41 -1.38 16 10 C -0.14 -1.19 10.15 -41.35 -0.42 -1.61 16 11 C -0.21 -1.73 11.21 29.14 0.33 -1.40 16 12 S 0.16 1.80 23.31 -107.50 -2.51 -0.70 16 13 O -0.23 -4.38 10.90 3.32 0.04 -4.35 16 14 N -0.57 -14.25 2.81 -174.82 -0.49 -14.74 16 15 C 0.15 3.72 7.87 59.85 0.47 4.20 16 16 C -0.28 -7.46 9.61 -15.06 -0.14 -7.60 16 17 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 18 C 0.01 0.36 5.13 -17.44 -0.09 0.27 16 19 N -0.90 -25.63 10.55 55.49 0.59 -25.05 16 20 Si 0.91 21.50 29.57 -169.99 -5.03 16.47 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 25 H 0.06 1.15 7.67 -51.93 -0.40 0.75 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.03 0.93 7.37 -51.93 -0.38 0.55 16 31 H 0.04 1.17 7.23 -51.93 -0.38 0.80 16 32 H 0.04 0.87 5.49 -51.93 -0.29 0.58 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 300.96 15.07 4.54 4.54 Total: -1.00 -30.97 300.96 -6.27 -37.24 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.51 Total: -2.97 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.60 Total: 0.46 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.80 Total: -50.68 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.51 Total: -0.70 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.97 -6.27 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.211 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds