Wall clock time and date at job start Tue Mar 31 2020 00:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47076 * 2 1 4 4 C 1.50696 * 109.47011 * 119.99763 * 2 1 3 5 5 N 1.30324 * 126.16323 * 75.02756 * 4 2 1 6 6 N 1.28659 * 109.58916 * 179.97438 * 5 4 2 7 7 C 1.31533 * 109.22951 * 359.97438 * 6 5 4 8 8 C 1.47047 * 126.41294 * 180.02562 * 7 6 5 9 9 C 1.36160 * 125.33509 * 359.97438 * 8 7 6 10 10 C 1.37743 * 114.44412 * 179.97438 * 9 8 7 11 11 C 1.33696 * 115.19391 * 0.02562 * 10 9 8 12 12 S 1.75835 * 109.95847 * 359.73452 * 11 10 9 13 13 O 1.34559 * 126.16161 * 254.71717 * 4 2 1 14 14 N 1.46498 * 109.47496 * 239.99978 * 2 1 3 15 15 C 1.46503 * 119.99510 * 300.00269 * 14 2 1 16 16 C 1.36933 * 120.00210 * 119.99548 * 14 2 1 17 17 H 1.08004 * 119.99884 * 21.72902 * 16 14 2 18 18 C 1.38808 * 119.99989 * 201.72405 * 16 14 2 19 19 N 1.31610 * 120.00486 * 11.57091 * 18 16 14 20 20 Si 1.86806 * 119.99737 * 191.57236 * 18 16 14 21 21 H 1.48500 * 109.47291 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46910 * 120.00029 * 20 18 16 23 23 H 1.48497 * 109.47057 * 240.00018 * 20 18 16 24 24 H 1.09007 * 109.46993 * 60.00038 * 1 2 3 25 25 H 1.09002 * 109.47076 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47526 * 300.00099 * 1 2 3 27 27 H 1.07996 * 122.77395 * 0.02562 * 9 8 7 28 28 H 1.08002 * 122.39954 * 179.97438 * 10 9 8 29 29 H 1.07999 * 125.02556 * 179.97438 * 11 10 9 30 30 H 1.09001 * 109.47207 * 95.31333 * 15 14 2 31 31 H 1.09004 * 109.46716 * 215.30642 * 15 14 2 32 32 H 1.08994 * 109.47078 * 335.30545 * 15 14 2 33 33 H 0.96998 * 120.00784 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.0323 -1.9984 1.4287 6 7 2.5332 -2.2569 2.5852 7 6 2.8744 -1.1298 3.1712 8 6 3.4822 -0.9873 4.5026 9 6 3.7879 -2.0144 5.3427 10 6 4.3521 -1.6249 6.5374 11 6 4.5117 -0.3061 6.6882 12 16 3.9349 0.5360 5.2564 13 8 2.5669 -0.1293 2.3200 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.8056 -0.0251 -2.0975 17 1 3.3527 0.8542 -1.7909 18 6 2.9005 -0.4806 -3.4053 19 7 2.0705 -1.4037 -3.8426 20 14 4.2065 0.2165 -4.5446 21 1 5.0075 1.2329 -3.8163 22 1 5.0977 -0.8787 -5.0046 23 1 3.5528 0.8488 -5.7185 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.6039 -3.0487 5.0926 28 1 4.6438 -2.3339 7.2980 29 1 4.9360 0.1714 7.5591 30 1 0.7911 -2.1449 -2.0781 31 1 2.5014 -2.6055 -1.9024 32 1 1.4375 -2.5727 -0.4758 33 1 2.1371 -1.7223 -4.7563 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:37 Heat of formation + Delta-G solvation = 83.696156 kcal Electronic energy + Delta-G solvation = -18986.717605 eV Core-core repulsion = 15948.796555 eV Total energy + Delta-G solvation = -3037.921049 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.12278 -38.82460 -38.30575 -37.18332 -34.63481 -32.86326 -31.17065 -29.45938 -28.11226 -26.19405 -25.89011 -24.50655 -23.74264 -21.81547 -20.23988 -19.38778 -18.92407 -18.41195 -17.58952 -17.11220 -16.68984 -16.14700 -15.68222 -15.00430 -14.89490 -14.39474 -14.20785 -13.72989 -13.52146 -13.43993 -13.30755 -13.25459 -13.16794 -12.89529 -12.71171 -12.57020 -12.33671 -11.99061 -11.93569 -11.87687 -11.65117 -11.21114 -10.76113 -9.61141 -9.49400 -9.05377 -7.90659 -5.43654 -0.78670 0.30222 0.48743 0.85475 1.08307 1.31825 1.45854 1.47057 1.57293 1.80607 2.44566 2.79649 3.26462 3.34588 3.64088 3.84566 4.10682 4.18681 4.24855 4.32216 4.44264 4.52539 4.59241 4.79085 4.94167 5.01732 5.05561 5.18427 5.29284 5.35733 5.40715 5.57630 5.68098 6.19553 7.01889 7.23245 7.67451 8.12006 9.12470 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.004156 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.874717 B = 6735.887764 C = 7043.521887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.253 3.747 3 H 0.108 0.892 4 C 0.176 3.824 5 N -0.308 5.308 6 N -0.302 5.302 7 C 0.219 3.781 8 C -0.183 4.183 9 C -0.060 4.060 10 C -0.145 4.145 11 C -0.170 4.170 12 S 0.161 5.839 13 O -0.230 6.230 14 N -0.587 5.587 15 C 0.172 3.828 16 C -0.284 4.284 17 H 0.079 0.921 18 C -0.041 4.041 19 N -0.929 5.929 20 Si 0.975 3.025 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.284 1.284 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.153 0.847 28 H 0.186 0.814 29 H 0.213 0.787 30 H 0.014 0.986 31 H 0.007 0.993 32 H 0.047 0.953 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 4.599 22.341 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.141 3.859 3 H 0.126 0.874 4 C -0.038 4.038 5 N -0.153 5.153 6 N -0.150 5.150 7 C 0.010 3.990 8 C -0.301 4.301 9 C -0.095 4.095 10 C -0.173 4.173 11 C -0.307 4.307 12 S 0.425 5.575 13 O -0.109 6.109 14 N -0.308 5.308 15 C 0.027 3.973 16 C -0.413 4.413 17 H 0.097 0.903 18 C -0.237 4.237 19 N -0.574 5.574 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.220 1.220 23 H -0.211 1.211 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.171 0.829 28 H 0.203 0.797 29 H 0.230 0.770 30 H 0.033 0.967 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.970 4.782 21.477 22.202 hybrid contribution 0.803 -0.428 -0.672 1.131 sum 3.773 4.354 20.805 21.588 Atomic orbital electron populations 1.22092 0.92203 1.02423 1.03050 1.19221 0.94684 0.94421 0.77573 0.87449 1.30592 0.93985 0.89929 0.89301 1.74273 1.18394 1.13674 1.08948 1.74741 1.14896 1.23485 1.01872 1.24637 0.99536 0.81789 0.93080 1.21478 1.14921 1.01026 0.92703 1.20986 0.96079 0.99766 0.92718 1.20336 1.02553 0.96621 0.97831 1.26534 1.04769 0.97367 1.01992 1.84483 1.57723 1.05303 1.09944 1.84936 1.61543 1.39187 1.25277 1.44151 1.58057 1.09284 1.19293 1.20731 0.97435 0.82871 0.96259 1.19650 1.20869 1.10824 0.89992 0.90309 1.25801 1.00381 0.99370 0.98140 1.70272 1.37783 1.33026 1.16282 0.85108 0.78484 0.77579 0.78619 1.18904 1.22049 1.21069 0.90631 0.93208 0.90154 0.82912 0.79699 0.77028 0.96718 0.97373 0.93469 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.18 71.98 0.66 -4.26 16 2 C 0.25 10.57 3.26 44.24 0.14 10.72 16 3 H 0.11 4.15 7.86 -2.39 -0.02 4.13 16 4 C 0.18 7.40 7.24 88.33 0.64 8.04 16 5 N -0.31 -13.84 9.61 -165.23 -1.59 -15.43 16 6 N -0.30 -12.50 12.23 -166.49 -2.04 -14.53 16 7 C 0.22 7.93 8.24 87.05 0.72 8.65 16 8 C -0.18 -4.93 6.46 24.10 0.16 -4.78 16 9 C -0.06 -1.26 10.12 21.67 0.22 -1.04 16 10 C -0.14 -1.89 10.15 21.12 0.21 -1.68 16 11 C -0.17 -1.95 11.21 66.79 0.75 -1.21 16 12 S 0.16 3.12 23.31 -56.49 -1.32 1.80 16 13 O -0.23 -8.81 10.90 -11.03 -0.12 -8.93 16 14 N -0.59 -30.17 2.81 -706.99 -1.98 -32.15 16 15 C 0.17 9.17 7.87 127.77 1.01 10.18 16 16 C -0.28 -15.58 9.61 84.03 0.81 -14.77 16 17 H 0.08 4.12 7.80 -2.91 -0.02 4.09 16 18 C -0.04 -2.26 5.13 84.86 0.44 -1.83 16 19 N -0.93 -54.90 10.55 21.65 0.23 -54.67 16 20 Si 0.97 44.78 29.57 68.60 2.03 46.81 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 25 H 0.05 1.87 7.67 -2.39 -0.02 1.86 16 26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 28 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 30 H 0.01 0.82 7.37 -2.39 -0.02 0.80 16 31 H 0.01 0.44 7.23 -2.38 -0.02 0.43 16 32 H 0.05 2.37 5.49 -2.39 -0.01 2.36 16 33 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -69.79 300.96 2.09 -67.70 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 1.13 Total: 1.37 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.75 Total: 8.03 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -5.38 Total: -116.79 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.12 Total: -8.93 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.32 Total: 1.80 kcal Total: -69.79 2.09 -67.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.396 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds